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 "cells": [
  {
   "attachments": {},
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "# Quickstart for TARDIS"
   ]
  },
  {
   "attachments": {},
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "Every simulation run requires [atomic data](io/configuration/components/atomic/atomic_data.rst) and a [configuration file](io/configuration/index.rst). \n",
    "\n",
    "## Atomic Data\n",
    "\n",
    "We recommend using the [kurucz_cd23_chianti_H_He.h5](https://dev.azure.com/tardis-sn/TARDIS/_apis/git/repositories/tardis-refdata/items?path=atom_data/kurucz_cd23_chianti_H_He.h5&resolveLfs=true) dataset."
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "from tardis.io.atom_data.util import download_atom_data"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "download_atom_data('kurucz_cd23_chianti_H_He')"
   ]
  },
  {
   "attachments": {},
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "You can also obtain a copy of the atomic data from the [tardis-refdata](https://github.com/tardis-sn/tardis-refdata/tree/master/atom_data) repository."
   ]
  },
  {
   "attachments": {},
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Example Configuration File\n",
    "\n",
    "The configuration file [tardis_example.yml](https://github.com/tardis-sn/tardis/tree/master/docs/tardis_example.yml) is used throughout this Quickstart."
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "!wget -q -nc https://raw.githubusercontent.com/tardis-sn/tardis/master/docs/tardis_example.yml"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "!cat tardis_example.yml"
   ]
  },
  {
   "attachments": {},
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Running the Simulation\n",
    "\n",
    "To run the simulation, import the `run_tardis` function and create the `sim` object. "
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "from tardis import run_tardis"
   ]
  },
  {
   "attachments": {},
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "<div class=\"alert alert-info\">\n",
    "\n",
    "**Note:**\n",
    "\n",
    "Get more information about the [progress bars](io/output/progress_bars.rst), [logging configuration](io/optional/tutorial_logging_configuration.ipynb), and [convergence plots](io/visualization/tutorial_convergence_plot.ipynb). \n",
    "    \n",
    "</div>"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "sim = run_tardis(\"tardis_example.yml\", \n",
    "                 virtual_packet_logging=True,\n",
    "                 show_convergence_plots=True,\n",
    "                 export_convergence_plots=True,\n",
    "                 log_level=\"INFO\") "
   ]
  },
  {
   "attachments": {},
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Plotting the Spectrum\n",
    "\n",
    "Finally, plot the generated spectrum with `matplotlib`."
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "import matplotlib.pyplot as plt"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "spectrum = sim.transport.transport_state.spectrum\n",
    "spectrum_virtual = sim.transport.transport_state.spectrum_virtual\n",
    "spectrum_integrated = sim.transport.transport_state.spectrum_integrated"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "%matplotlib inline\n",
    "plt.figure(figsize=(10, 6.5))\n",
    "\n",
    "spectrum.plot(label=\"Normal packets\")\n",
    "spectrum_virtual.plot(label=\"Virtual packets\")\n",
    "spectrum_integrated.plot(label='Formal integral')\n",
    "\n",
    "plt.xlim(500, 9000)\n",
    "plt.title(\"TARDIS example model spectrum\")\n",
    "plt.xlabel(\"Wavelength [$\\AA$]\")\n",
    "plt.ylabel(\"Luminosity density [erg/s/$\\AA$]\")\n",
    "plt.legend()\n",
    "plt.show()"
   ]
  }
 ],
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