{
 "cells": [
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "# Non-Homologous TARDIS Workflow"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "from numba import config as nbconfig\n",
    "\n",
    "nbconfig.DISABLE_JIT = False"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "import matplotlib.pyplot as plt\n",
    "\n",
    "from tardis.io.configuration.config_reader import Configuration\n",
    "from tardis.workflows.nonhomologous_tardis_workflow import (\n",
    "    NonhomologousTARDISWorkflow,\n",
    ")\n",
    "from tardis.workflows.simple_tardis_workflow import SimpleTARDISWorkflow\n"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "config = Configuration.from_yaml('../tardis_example.yml')\n",
    "config.montecarlo['enable_full_relativity'] = False"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "workflow = NonhomologousTARDISWorkflow(config)\n",
    "hom_workflow = SimpleTARDISWorkflow(config)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "workflow.run()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "hom_workflow.run()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "spectrum = workflow.spectrum_solver.spectrum_real_packets\n",
    "spectrum_virtual = workflow.spectrum_solver.spectrum_virtual_packets\n",
    "spectrum_integrated = workflow.spectrum_solver.spectrum_integrated\n",
    "hom_spectrum = hom_workflow.spectrum_solver.spectrum_real_packets\n",
    "hom_spectrum_virtual = hom_workflow.spectrum_solver.spectrum_virtual_packets\n",
    "hom_spectrum_integrated = workflow.spectrum_solver.spectrum_integrated"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "%matplotlib inline\n",
    "plt.figure(figsize=(10, 6.5))\n",
    "\n",
    "spectrum.plot(label=\"Normal packets, non-homology\", c='C0', alpha=0.1)\n",
    "hom_spectrum.plot(label=\"Normal packets, homology\", c='C1', alpha=0.1)\n",
    "\n",
    "spectrum_virtual.plot(linewidth=3, c='w', alpha=1.0)\n",
    "hom_spectrum_virtual.plot(linewidth=4, c='w', alpha=1.0)\n",
    "spectrum_virtual.plot(label=\"Virtual packets, non-homology\", c='C0', alpha=0.35)\n",
    "hom_spectrum_virtual.plot(label=\"Virtual packets, homology\", c='C1', alpha=0.35)\n",
    "\n",
    "spectrum_integrated.plot(linewidth=3, c='w', alpha=1.0)\n",
    "spectrum_integrated.plot(label=\"Formal Integral, non-homology\", c='C0', alpha=1.0)\n",
    "hom_spectrum_integrated.plot(label=\"Formal Integral, homology\", c='C1', alpha=1.0, linestyle='--')\n",
    "\n",
    "\n",
    "plt.xlim(500, 9000)\n",
    "plt.title(\"TARDIS example model spectrum\")\n",
    "plt.xlabel(r\"Wavelength [$\\AA$]\")\n",
    "plt.ylabel(r\"Luminosity density [erg/s/$\\AA$]\")\n",
    "plt.legend()\n",
    "plt.show()"
   ]
  }
 ],
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   "file_extension": ".py",
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