tardis.io.util module

class tardis.io.util.HDFWriterMixin(*args, **kwargs)

Bases: object

static convert_to_snake_case(s)

property full_hdf_properties

get_properties()

to_hdf(file_path_or_buf, path='', name=None, overwrite=False)

Parameters:

file_path_or_bufstr or pandas.io.pytables.HDFStore

Path or buffer to the HDF file

pathstr

Path inside the HDF file to store the elements

namestr

Group inside the HDF file to which the elements need to be saved

overwritebool

If the HDF file path already exists, whether to overwrite it or not

static to_hdf_util(path_or_buf, path, elements, overwrite, complevel=9, complib='blosc')

A function to uniformly store TARDIS data to an HDF file.

Scalars will be stored in a Series under path/scalars 1D arrays will be stored under path/property_name as distinct Series 2D arrays will be stored under path/property_name as distinct DataFrames

Units will be stored as their CGS value

Parameters:

path_or_bufstr or pandas.io.pytables.HDFStore

Path or buffer to the HDF file

pathstr

Path inside the HDF file to store the elements

elementsdict

A dict of property names and their values to be stored.

overwritebool

If the HDF file path already exists, whether to overwrite it or not

Notes

overwrite option doesn’t have any effect when path_or_buf is an HDFStore because the user decides on the mode in which they have opened the HDFStore (‘r’, ‘w’ or ‘a’).

class tardis.io.util.MockRegexPattern(target_type)

Bases: object

A mock class to be used in place of a compiled regular expression when a type check is needed instead of a regex match.

Notes

This is usually a lot slower than regex matching.

match(text)

Parameters:

text

A string to be passed to target_type for conversion.

Returns:

bool

Returns True if text can be converted to target_type, otherwise returns False

class tardis.io.util.PlasmaWriterMixin(*args, **kwargs)

Bases: HDFWriterMixin

get_properties()

to_hdf(file_path_or_buf, path='', name=None, collection=None, overwrite=False)

Parameters:

file_path_or_bufstr or pandas.io.pytables.HDFStore

Path or buffer to the HDF file

pathstr

Path inside the HDF file to store the elements

namestr

Group inside the HDF file to which the elements need to be saved

collection

None or a PlasmaPropertyCollection of which members are the property types which will be stored. If None then all types of properties will be stored. This acts like a filter, for example if a value of property_collections.basic_inputs is given, only those input parameters will be stored to the HDF file.

overwritebool

If the HDF file path already exists, whether to overwrite it or not

class tardis.io.util.YAMLLoader(stream)

Bases: Loader

A custom YAML loader containing all the constructors required to properly parse the tardis configuration.

Initialize the scanner.

construct_quantity(node)

A constructor for converting quantity-like YAML nodes to astropy.units.Quantity objects.

Parameters:

node

The YAML node to be constructed

Returns:

astropy.units.Quantity

mapping_constructor(node)

tardis.io.util.assert_equality(item1, item2)

tardis.io.util.check_equality(item1, item2)

tardis.io.util.download_from_url(url, dst, checksum, src=None, retries=3)

Download files from a given URL

Parameters:

urlstr

URL to download from

dststr

Destination folder for the downloaded file

srctuple

List of URLs to use as mirrors

tardis.io.util.get_internal_data_path(fname)

Get internal data path of TARDIS

Returns:

data_pathstr

internal data path of TARDIS

tardis.io.util.quantity_from_str(text)

Convert a string to astropy.units.Quantity

Parameters:

text

The string to convert to astropy.units.Quantity

Returns:

astropy.units.Quantity

tardis.io.util.traverse_configs(base, other, func, *args)

Recursively traverse a base dict or list along with another one calling func for leafs of both objects.

Parameters:

base

The object on which the traversing is done

other

The object which is traversed along with base

func

A function called for each leaf of base and the correspnding leaf of other Signature: func(item1, item2, *args)

args

Arguments passed into func

tardis.io.util.yaml_load_file(filename, loader=<class 'yaml.loader.Loader'>)