## Changelog ### release-2025.03.23 (2025/03/22 21:06) - [3016](https://github.com/tardis-sn/tardis/pull/3016) Workflow Label Pipeline and Fixes (3016) (@atharva-2001) - [3022](https://github.com/tardis-sn/tardis/pull/3022) add final integrated tau property to v_inner workflow (3022) (@jvshields) - [2981](https://github.com/tardis-sn/tardis/pull/2981) v_inner_solver store plasma state fxn (2981) (@erinvisser) - [3019](https://github.com/tardis-sn/tardis/pull/3019) Post-release 2025.03.19 (3019) (@tardis-bot) ### release-2025.03.19 (2025/03/17 17:44) - [3014](https://github.com/tardis-sn/tardis/pull/3014) Post-release 2025.03.16 (3014) (@tardis-bot) ### release-2025.03.16 (2025/03/11 09:19) - [2968](https://github.com/tardis-sn/tardis/pull/2968) Add sdec visualisation notebook (2968) (@KasukabeDefenceForce) - [3001](https://github.com/tardis-sn/tardis/pull/3001) Document `LFS-cache` workflow and the `setup-lfs` action (3001) (@atharva-2001) - [3004](https://github.com/tardis-sn/tardis/pull/3004) Fix post release workflow by pinning python version to 3.12 (3004) (@KasukabeDefenceForce) - [3000](https://github.com/tardis-sn/tardis/pull/3000) Send a dispatch to tardis website to update credits (3000) (@KasukabeDefenceForce) ### release-2025.03.09 (2025/03/06 16:05) - [2984](https://github.com/tardis-sn/tardis/pull/2984) Fix init bug for: line_interaction_type=scatter (2984) (@roee2000) - [2969](https://github.com/tardis-sn/tardis/pull/2969) Replace with appropriate .loc or .iloc method. (2969) (@rohit2p) - [2982](https://github.com/tardis-sn/tardis/pull/2982) [Docs] : updated the pytest arg from --regression-data to --tardis-regression-data (2982) (@rudrakshnalbalwar) - [2988](https://github.com/tardis-sn/tardis/pull/2988) Remove plasma object going into the macroatom (2988) (@jvshields) - [2999](https://github.com/tardis-sn/tardis/pull/2999) Trigger LFS-cache generation from regression data repository (2999) (@atharva-2001) - [2993](https://github.com/tardis-sn/tardis/pull/2993) Regression data comparison workflow (2993) (@atharva-2001) ### release-2025.03.02 (2025/02/26 13:13) - [2793](https://github.com/tardis-sn/tardis/pull/2793) Gamma ray spectra dep (2793) (@Knights-Templars) - [2935](https://github.com/tardis-sn/tardis/pull/2935) Numpy v2 Upgrade PR 2 (2935) (@atharva-2001) ### release-2025.02.23 (2025/02/21 15:11) - [2962](https://github.com/tardis-sn/tardis/pull/2962) Updated packet_source to fix bug with BlackBodySimpleSource.create_pa… (2962) (@nvieira-mcgill) - [2980](https://github.com/tardis-sn/tardis/pull/2980) Move required images in the analyzing tardis outputs directory (2980) (@KasukabeDefenceForce) - [2967](https://github.com/tardis-sn/tardis/pull/2967) Move visualization section to analysing tardis output (2967) (@KasukabeDefenceForce) - [2975](https://github.com/tardis-sn/tardis/pull/2975) Fail LFS pull if label not present (2975) (@atharva-2001) ### release-2025.02.16 (2025/02/10 11:20) - [2951](https://github.com/tardis-sn/tardis/pull/2951) Ensures consistency across codebase to ensure consistent codestyle (2951) (@Sonu0305) - [2956](https://github.com/tardis-sn/tardis/pull/2956) Fixes the codestyle for Invalid Class Names (2956) (@Sonu0305) ### release-2025.02.09 (2025/02/05 12:21) - [2966](https://github.com/tardis-sn/tardis/pull/2966) Fix LFS sparse checkout (2966) (@atharva-2001) - [2963](https://github.com/tardis-sn/tardis/pull/2963) updated converged status to self.converged throughout workflow (2963) (@erinvisser) - [2965](https://github.com/tardis-sn/tardis/pull/2965) Disallow Merge Refs from Creating Cache (2965) (@atharva-2001) ### release-2025.02.02 (2025/01/27 11:40) - [2954](https://github.com/tardis-sn/tardis/pull/2954) LFS Fixes (2954) (@atharva-2001) - [2958](https://github.com/tardis-sn/tardis/pull/2958) Post-release 2025.01.26 (2958) (@tardis-bot) ### release-2025.01.26 (2025/01/24 14:54) - [2932](https://github.com/tardis-sn/tardis/pull/2932) opacity_state_to_numba -> to_numba and moved to as a method of class OpacityState (2932) (@Sonu0305) - [2897](https://github.com/tardis-sn/tardis/pull/2897) Ionization rates (2897) (@andrewfullard) - [2938](https://github.com/tardis-sn/tardis/pull/2938) Fixes spelling errors in the codebase (2938) (@Sonu0305) - [2952](https://github.com/tardis-sn/tardis/pull/2952) Post-release 2025.01.19 (2952) (@tardis-bot) ### release-2025.01.19 (2025/01/14 16:54) - [2800](https://github.com/tardis-sn/tardis/pull/2800) V inner formal integral (2800) (@Rodot-) - [2946](https://github.com/tardis-sn/tardis/pull/2946) Fixes indentation for tracking key to be nested under montecarlo key in YAML (2946) (@Sonu0305) - [2907](https://github.com/tardis-sn/tardis/pull/2907) Add missing init.py file in opacitites module (2907) (@KasukabeDefenceForce) - [2922](https://github.com/tardis-sn/tardis/pull/2922) Fixed data download link mentioned under Quickstart for TARDIS (2922) (@Sonu0305) - [2908](https://github.com/tardis-sn/tardis/pull/2908) Ignore ipynb files in codespell (2908) (@KasukabeDefenceForce) - [2943](https://github.com/tardis-sn/tardis/pull/2943) Post-release 2025.01.12 (2943) (@tardis-bot) ### release-2025.01.12 (2025/01/09 03:46) - [2925](https://github.com/tardis-sn/tardis/pull/2925) give tag in git cliff command (2925) (@KasukabeDefenceForce) - [2923](https://github.com/tardis-sn/tardis/pull/2923) Moves non-physical input check outsode I/O module (2923) (@Sonu0305) - [2924](https://github.com/tardis-sn/tardis/pull/2924) Post-release 2025.01.05 (2924) (@tardis-bot) ### release-2025.01.05 (2024/12/30 01:37) - [2915](https://github.com/tardis-sn/tardis/pull/2915) Post-release 2024.12.29 (2915) (@tardis-bot) ### release-2024.12.29 (2024/12/23 04:39) - [2909](https://github.com/tardis-sn/tardis/pull/2909) Post-release 2024.12.22 (2909) (@tardis-bot) ### release-2024.12.22 (2024/12/16 10:05) - [2901](https://github.com/tardis-sn/tardis/pull/2901) Update test docs (2901) (@KasukabeDefenceForce) - [2905](https://github.com/tardis-sn/tardis/pull/2905) Post-release 2024.12.15 (2905) (@tardis-bot) ### release-2024.12.15 (2024/12/09 10:05) - [2902](https://github.com/tardis-sn/tardis/pull/2902) Fix Benchmarks Workflow (2902) (@atharva-2001) - [2900](https://github.com/tardis-sn/tardis/pull/2900) Post-release 2024.12.08 (2900) (@tardis-bot) ### release-2024.12.08 (2024/12/04 12:24) - [2898](https://github.com/tardis-sn/tardis/pull/2898) Remove "labeled" from tests workflow triggers (2898) (@KasukabeDefenceForce) - [2865](https://github.com/tardis-sn/tardis/pull/2865) Rates matrix solver (2865) (@andrewfullard) - [2874](https://github.com/tardis-sn/tardis/pull/2874) Remove tau sobolevs from plasma (2874) (@andrewfullard) - [2894](https://github.com/tardis-sn/tardis/pull/2894) Fixing label issue in convergence plots (see Issue #2446) (2894) (@jamesgillanders) - [2895](https://github.com/tardis-sn/tardis/pull/2895) Post-release 2024.12.01 (2895) (@tardis-bot) ### release-2024.12.01 (2024/11/25 10:00) - [2889](https://github.com/tardis-sn/tardis/pull/2889) Add token to release workflow (2889) (@KasukabeDefenceForce) - [2890](https://github.com/tardis-sn/tardis/pull/2890) Update badge for doc string coverage (2890) (@KasukabeDefenceForce) - [2891](https://github.com/tardis-sn/tardis/pull/2891) Revert "Fix the issue where the docs are built twice when there are no changes" (2891) (@KasukabeDefenceForce) - [2888](https://github.com/tardis-sn/tardis/pull/2888) Post-release 2024.11.25 (2888) (@tardis-bot) ### release-2024.11.24 (2024/11/20 12:32) - [2887](https://github.com/tardis-sn/tardis/pull/2887) Post-release 2024.11.20 (2887) (@tardis-bot) ### release-2024.11.20 (2024/11/20 10:01) - [2886](https://github.com/tardis-sn/tardis/pull/2886) Release Fixes (2886) (@atharva-2001) - [2884](https://github.com/tardis-sn/tardis/pull/2884) Release Fixes (2884) (@atharva-2001) - [2870](https://github.com/tardis-sn/tardis/pull/2870) Replace M_PI=np.arccos(-1) with M_PI=np.pi (2870) (@Akash265) - [2873](https://github.com/tardis-sn/tardis/pull/2873) Post-release 2024.11.11 (2873) (@tardis-bot) - [2844](https://github.com/tardis-sn/tardis/pull/2844) Remove integration tests (2844) (@KasukabeDefenceForce) - [2871](https://github.com/tardis-sn/tardis/pull/2871) Fix the issue where the docs are built twice when there are no changes (2871) (@KasukabeDefenceForce) ### release-2024.11.11 (2024/11/04 10:14) - [2858](https://github.com/tardis-sn/tardis/pull/2858) Gamma ray documentation introduction (2858) (@CePowers) - [2730](https://github.com/tardis-sn/tardis/pull/2730) Simulation solver workflow (2730) (@andrewfullard) - [2860](https://github.com/tardis-sn/tardis/pull/2860) Cleanup codestyle workflow (2860) (@KasukabeDefenceForce) - [2842](https://github.com/tardis-sn/tardis/pull/2842) Update docs with regression data (2842) (@KasukabeDefenceForce) - [2746](https://github.com/tardis-sn/tardis/pull/2746) Remove `rpacket_tracking` flag from tests workflow (2746) (@atharva-2001) - [2843](https://github.com/tardis-sn/tardis/pull/2843) Close regression data files (2843) (@atharva-2001) - [2848](https://github.com/tardis-sn/tardis/pull/2848) Ruff `tardis/spectrum` (2848) (@atharva-2001) - [2849](https://github.com/tardis-sn/tardis/pull/2849) Ruff root files (2849) (@atharva-2001) - [2862](https://github.com/tardis-sn/tardis/pull/2862) Fix release 2024-10-14 CHANGELOG (2862) (@atharva-2001) - [2861](https://github.com/tardis-sn/tardis/pull/2861) Replace `setup_lfs` action with single file checkout (2861) (@atharva-2001) - [2857](https://github.com/tardis-sn/tardis/pull/2857) Post-release 2024.10.14 (2857) (@tardis-bot) - [2770](https://github.com/tardis-sn/tardis/pull/2770) Restructure/detailed balance foundation (2770) (@wkerzendorf) - [2833](https://github.com/tardis-sn/tardis/pull/2833) Pytest Warnings Fix - 2 (2833) (@KasukabeDefenceForce) - [2851](https://github.com/tardis-sn/tardis/pull/2851) Fix codespell (2851) (@KasukabeDefenceForce) - [2854](https://github.com/tardis-sn/tardis/pull/2854) Remove black from environment yml and lock files. (2854) (@KasukabeDefenceForce) - [2855](https://github.com/tardis-sn/tardis/pull/2855) Remove black from docs and update with ruff (2855) (@KasukabeDefenceForce) - [2853](https://github.com/tardis-sn/tardis/pull/2853) Remove black from codestyle workflow (2853) (@KasukabeDefenceForce) ### release-2024.10.14 (2024/10/08 12:37) - [2824](https://github.com/tardis-sn/tardis/pull/2824) fix typo for word boundaries in doc (2824) (@RyanGroneck) - [2847](https://github.com/tardis-sn/tardis/pull/2847) Ruff on tardis/simulation (2847) (@atharva-2001) - [2845](https://github.com/tardis-sn/tardis/pull/2845) Ruff `tardis/plasma` (2845) (@atharva-2001) - [2838](https://github.com/tardis-sn/tardis/pull/2838) Add zenodo badge in the release summary notes (2838) (@KasukabeDefenceForce) - [2836](https://github.com/tardis-sn/tardis/pull/2836) New Gammaray Packet Initialization Documentation (2836) (@CePowers) - [2839](https://github.com/tardis-sn/tardis/pull/2839) Fix mambaforge issue in STARDIS tests (2839) (@atharva-2001) - [2840](https://github.com/tardis-sn/tardis/pull/2840) Fix benchmarks 2 (2840) (@atharva-2001) - [2841](https://github.com/tardis-sn/tardis/pull/2841) Fix navigation sidebar on mobile (2841) (@KasukabeDefenceForce) - [2835](https://github.com/tardis-sn/tardis/pull/2835) Pre Release Zenodo Not Found (2835) (@atharva-2001) - [2834](https://github.com/tardis-sn/tardis/pull/2834) Fixes qgridnext import error in tests (2834) (@andrewfullard) - [2816](https://github.com/tardis-sn/tardis/pull/2816) Release Modifications (2816) (@atharva-2001) - [2831](https://github.com/tardis-sn/tardis/pull/2831) Failing benchmarks fix (2831) (@atharva-2001) - [2823](https://github.com/tardis-sn/tardis/pull/2823) Handle Test warnings (2823) (@KasukabeDefenceForce) - [2830](https://github.com/tardis-sn/tardis/pull/2830) Fix for #2820 (2830) (@atharva-2001) - [2832](https://github.com/tardis-sn/tardis/pull/2832) Failing Docs Fix (2832) (@atharva-2001) - [2829](https://github.com/tardis-sn/tardis/pull/2829) Ruff `tardis/transport` (2829) (@atharva-2001) - [2828](https://github.com/tardis-sn/tardis/pull/2828) Ruff `tardis/model` (2828) (@atharva-2001) - [2827](https://github.com/tardis-sn/tardis/pull/2827) Ruff `tardis/io` (2827) (@atharva-2001) - [2826](https://github.com/tardis-sn/tardis/pull/2826) Ruff Autofixes (tardis/analysis) (2826) (@atharva-2001) - [2819](https://github.com/tardis-sn/tardis/pull/2819) Handling for qgridnext installation (2819) (@andrewfullard) - [2811](https://github.com/tardis-sn/tardis/pull/2811) Update line_interaction_in_r after moving the packet (2811) (@Sumit112192) - [2808](https://github.com/tardis-sn/tardis/pull/2808) Migrate to Regression Data Completely (2808) (@atharva-2001) - [2814](https://github.com/tardis-sn/tardis/pull/2814) Move to qgridnext (2814) (@sarthak-dv) - [2807](https://github.com/tardis-sn/tardis/pull/2807) Add codespell workflow (2807) (@KasukabeDefenceForce) - [2810](https://github.com/tardis-sn/tardis/pull/2810) Post-release 2024.08.25 (2810) (@tardis-bot) ### release-2024.08.25 (2024/08/24 20:44) - [2809](https://github.com/tardis-sn/tardis/pull/2809) Pre-release 2024.08.25 (2809) (@tardis-bot) - [2795](https://github.com/tardis-sn/tardis/pull/2795) Doc changes for RPacketTracker (2795) (@Sumit112192) - [2806](https://github.com/tardis-sn/tardis/pull/2806) Add molecular data exposure to tardis atom data (2806) (@jvshields) - [2805](https://github.com/tardis-sn/tardis/pull/2805) TARDIS Full Formal Integral Regression Tests (2805) (@atharva-2001) - [2723](https://github.com/tardis-sn/tardis/pull/2723) LIV Plot Tests (2723) (@sarthak-dv) - [2804](https://github.com/tardis-sn/tardis/pull/2804) Simulation Regression Tests (2804) (@atharva-2001) - [2783](https://github.com/tardis-sn/tardis/pull/2783) Simple Atom data refactor (2783) (@andrewfullard) - [2794](https://github.com/tardis-sn/tardis/pull/2794) Update research papers notebook and update the docs (2794) (@KasukabeDefenceForce) - [2798](https://github.com/tardis-sn/tardis/pull/2798) Remove deprecated setup.py (2798) (@KasukabeDefenceForce) - [2803](https://github.com/tardis-sn/tardis/pull/2803) Post-release 2024.08.18 (2803) (@tardis-bot) ### release-2024.08.18 (2024/08/17 20:45) - [2802](https://github.com/tardis-sn/tardis/pull/2802) Pre-release 2024.08.18 (2802) (@tardis-bot) - [2788](https://github.com/tardis-sn/tardis/pull/2788) Update benchmark base (2788) (@officialasishkumar) - [2785](https://github.com/tardis-sn/tardis/pull/2785) Convert SDEC tests to Regression Data (2785) (@atharva-2001) - [2799](https://github.com/tardis-sn/tardis/pull/2799) Remove syrupy section from docs (2799) (@KasukabeDefenceForce) - [2801](https://github.com/tardis-sn/tardis/pull/2801) Fix file formats (2801) (@andrewfullard) - [2784](https://github.com/tardis-sn/tardis/pull/2784) Add Packet Wavelength filter to LIV Plot (2784) (@sarthak-dv) - [2786](https://github.com/tardis-sn/tardis/pull/2786) Macroatom restructure (2786) (@Rodot-) - [2748](https://github.com/tardis-sn/tardis/pull/2748) [restructure/plasma] Cleanup plasma assembly (2748) (@wkerzendorf) - [2736](https://github.com/tardis-sn/tardis/pull/2736) Track boundary interaction (2736) (@Sumit112192) - [2782](https://github.com/tardis-sn/tardis/pull/2782) Change parameters in benchmarks (2782) (@officialasishkumar) - [2790](https://github.com/tardis-sn/tardis/pull/2790) Post-release 2024.08.12 (2790) (@tardis-bot) ### release-2024.08.12 (2024/08/12 08:57) - [2789](https://github.com/tardis-sn/tardis/pull/2789) Pre-release 2024.08.11 (2789) (@tardis-bot) - [2759](https://github.com/tardis-sn/tardis/pull/2759) Minor refactor of the spectrum solver (2759) (@andrewfullard) - [2787](https://github.com/tardis-sn/tardis/pull/2787) some spelling fixes in the docs (2787) (@zingale) - [2778](https://github.com/tardis-sn/tardis/pull/2778) Ruff Fix 2 (2778) (@atharva-2001) - [2781](https://github.com/tardis-sn/tardis/pull/2781) Update docstrings of Tracker tests (2781) (@Sumit112192) - [2773](https://github.com/tardis-sn/tardis/pull/2773) Opacity state restructure (2773) (@Rodot-) - [2776](https://github.com/tardis-sn/tardis/pull/2776) Post-release 2024.08.04 (2776) (@tardis-bot) ### release-2024.08.04 (2024/08/03 20:49) - [2775](https://github.com/tardis-sn/tardis/pull/2775) Pre-release 2024.08.04 (2775) (@tardis-bot) - [2749](https://github.com/tardis-sn/tardis/pull/2749) Cache benchmark functions (2749) (@officialasishkumar) - [2762](https://github.com/tardis-sn/tardis/pull/2762) Fix ruff comments issue (2762) (@atharva-2001) - [2767](https://github.com/tardis-sn/tardis/pull/2767) Release Pipeline Fixes (2767) (@atharva-2001) - [2758](https://github.com/tardis-sn/tardis/pull/2758) Opacity state slice (2758) (@Rodot-) - [2771](https://github.com/tardis-sn/tardis/pull/2771) Add Extend Array Function (2771) (@Sumit112192) - [2761](https://github.com/tardis-sn/tardis/pull/2761) Donot run docs, benchmarks and stardis tests on draft PRs. (2761) (@KasukabeDefenceForce) - [2720](https://github.com/tardis-sn/tardis/pull/2720) Benchmark run_tardis with track_rpacket enabled (2720) (@Sumit112192) - [2675](https://github.com/tardis-sn/tardis/pull/2675) [Restructure/plasma] estimator cleanup (2675) (@wkerzendorf) - [2670](https://github.com/tardis-sn/tardis/pull/2670) Changed file path (2670) (@Knights-Templars) - [2763](https://github.com/tardis-sn/tardis/pull/2763) Add benchmark documentation (2763) (@officialasishkumar) - [2719](https://github.com/tardis-sn/tardis/pull/2719) Restructure Trackers (2719) (@Sumit112192) - [2745](https://github.com/tardis-sn/tardis/pull/2745) Address pytest warnings (2745) (@atharva-2001) - [2753](https://github.com/tardis-sn/tardis/pull/2753) Run stardis tests on Tardis PRs (2753) (@KasukabeDefenceForce) - [2754](https://github.com/tardis-sn/tardis/pull/2754) Ruff Workflow Fix (2754) (@atharva-2001) - [2751](https://github.com/tardis-sn/tardis/pull/2751) Post-release 2024.07.28 (2751) (@tardis-bot) ### release-2024.07.28 (2024/07/27 20:43) - [2750](https://github.com/tardis-sn/tardis/pull/2750) Pre-release 2024.07.28 (2750) (@tardis-bot) - [2718](https://github.com/tardis-sn/tardis/pull/2718) Weighted Packet Sampler (2718) (@Rodot-) - [2747](https://github.com/tardis-sn/tardis/pull/2747) Commit hash of PR HEAD not found fix (2747) (@officialasishkumar) - [2740](https://github.com/tardis-sn/tardis/pull/2740) Adds number_of_packets property to the packet collection (2740) (@andrewfullard) - [2735](https://github.com/tardis-sn/tardis/pull/2735) Add solve method to SpectrumSolver (2735) (@andrewfullard) - [2660](https://github.com/tardis-sn/tardis/pull/2660) Add ruff workflow (2660) (@atharva-2001) - [2744](https://github.com/tardis-sn/tardis/pull/2744) fix docs build by removing the `parse_simulation_state` function from the `tardis.io.model` module and moving it to the `tardis.io.model.parse_simulation_state` module (2744) (@wkerzendorf) - [2742](https://github.com/tardis-sn/tardis/pull/2742) Fix Codecov (2742) (@atharva-2001) - [2664](https://github.com/tardis-sn/tardis/pull/2664) [Restructure/plasma] Refactor the simulation state initialization (2664) (@wkerzendorf) - [2734](https://github.com/tardis-sn/tardis/pull/2734) Moves time explosion off the transport solver to the transport state (2734) (@andrewfullard) - [2722](https://github.com/tardis-sn/tardis/pull/2722) Refactor benchmarks (2722) (@officialasishkumar) - [2613](https://github.com/tardis-sn/tardis/pull/2613) [Restructure/plasma] restructure the Radiationfields (2613) (@wkerzendorf) - [2731](https://github.com/tardis-sn/tardis/pull/2731) Fast formal integral (2731) (@Rodot-) - [2725](https://github.com/tardis-sn/tardis/pull/2725) Fast Formal Integral (2725) (@Rodot-) - [2728](https://github.com/tardis-sn/tardis/pull/2728) Fix Failing docstr-cov Badge (2728) (@atharva-2001) - [2727](https://github.com/tardis-sn/tardis/pull/2727) Fix Cache Issues (2727) (@atharva-2001) - [2726](https://github.com/tardis-sn/tardis/pull/2726) Codecov fix (2726) (@atharva-2001) - [2689](https://github.com/tardis-sn/tardis/pull/2689) Spectrum refactor (2689) (@andrewfullard) - [2721](https://github.com/tardis-sn/tardis/pull/2721) Pre Release Workflow Fix (2721) (@atharva-2001) - [2716](https://github.com/tardis-sn/tardis/pull/2716) Implement last interaction tracker (2716) (@Sumit112192) - [2717](https://github.com/tardis-sn/tardis/pull/2717) Remove parameters and speed up benchmarks (2717) (@officialasishkumar) - [2709](https://github.com/tardis-sn/tardis/pull/2709) Add google analytics key to tardis docs (2709) (@KasukabeDefenceForce) - [2711](https://github.com/tardis-sn/tardis/pull/2711) Shifting git cliff changelog generator configuration to pyproject.toml (2711) (@KasukabeDefenceForce) - [2713](https://github.com/tardis-sn/tardis/pull/2713) Move pip tests to release workflow (2713) (@atharva-2001) - [2699](https://github.com/tardis-sn/tardis/pull/2699) Separate Continuum Tests (2699) (@atharva-2001) - [2677](https://github.com/tardis-sn/tardis/pull/2677) Last Interaction Velocity (2677) (@sarthak-dv) - [2705](https://github.com/tardis-sn/tardis/pull/2705) Montecarlo globals (limited scope) (2705) (@andrewfullard) - [2703](https://github.com/tardis-sn/tardis/pull/2703) Pre Release Fix (2703) (@atharva-2001) - [2704](https://github.com/tardis-sn/tardis/pull/2704) Shifting update refdata workflow to archive folder (2704) (@KasukabeDefenceForce) - [2702](https://github.com/tardis-sn/tardis/pull/2702) Benchmark fix for github actions (2702) (@officialasishkumar) - [2640](https://github.com/tardis-sn/tardis/pull/2640) Refactor and add more benchmarks for montecarlo (2640) (@officialasishkumar) - [2698](https://github.com/tardis-sn/tardis/pull/2698) Move setup environment steps to composite action (2698) (@atharva-2001) - [2696](https://github.com/tardis-sn/tardis/pull/2696) Adds continuum marker to pytest and continuum tests (2696) (@andrewfullard) - [2667](https://github.com/tardis-sn/tardis/pull/2667) Add arm64 conda-lock file (2667) (@atharva-2001) - [2695](https://github.com/tardis-sn/tardis/pull/2695) Logging - avoid the zero division warning (2695) (@DeerWhale) - [2694](https://github.com/tardis-sn/tardis/pull/2694) Change setup.cfg to pyproject.toml (2694) (@KasukabeDefenceForce) - [2119](https://github.com/tardis-sn/tardis/pull/2119) adding RPacketPlotter to TARDIS (2119) (@jayantbhakar) - [2693](https://github.com/tardis-sn/tardis/pull/2693) Post-release 2024.07.07 (2693) (@tardis-bot) ### release-2024.07.07 (2024/07/06 20:49) - [2692](https://github.com/tardis-sn/tardis/pull/2692) Pre-release 2024.07.07 (2692) (@tardis-bot) - [2656](https://github.com/tardis-sn/tardis/pull/2656) fix benchmark action (2656) (@officialasishkumar) - [2684](https://github.com/tardis-sn/tardis/pull/2684) Fix hdf path for time_of_simulation in sdec plot (2684) (@sarthak-dv) - [2652](https://github.com/tardis-sn/tardis/pull/2652) I/O Refactoring (2652) (@andrewfullard) - [2666](https://github.com/tardis-sn/tardis/pull/2666) Add Ruff to TARDIS Environment (2666) (@atharva-2001) - [2629](https://github.com/tardis-sn/tardis/pull/2629) Updating github changes command in post release workflow (changelog fix) (2629) (@KasukabeDefenceForce) - [2665](https://github.com/tardis-sn/tardis/pull/2665) Fix benchmarks errors (2665) (@KasukabeDefenceForce) - [2669](https://github.com/tardis-sn/tardis/pull/2669) Updating "Environment update" section in tardis docs (2669) (@KasukabeDefenceForce) - [2668](https://github.com/tardis-sn/tardis/pull/2668) Adding analytics to tardis documentation (2668) (@KasukabeDefenceForce) - [2609](https://github.com/tardis-sn/tardis/pull/2609) [Restructure/plasma] Initial Opacities Refactor (2609) (@wkerzendorf) - [2659](https://github.com/tardis-sn/tardis/pull/2659) Update Ruff Config (2659) (@atharva-2001) ### release-2024.06.09 (2024/06/08 20:52) - [2649](https://github.com/tardis-sn/tardis/pull/2649) Pre-release 2024.06.09 (2649) (@tardis-bot) - [2647](https://github.com/tardis-sn/tardis/pull/2647) Move rpacket_trackers_to_dataframe function to packet_trackers.py file (2647) (@Sumit112192) - [2608](https://github.com/tardis-sn/tardis/pull/2608) Refactoring of Monte Carlo transport (2608) (@andrewfullard) - [2518](https://github.com/tardis-sn/tardis/pull/2518) Convergence restructure (2518) (@andrewfullard) - [2641](https://github.com/tardis-sn/tardis/pull/2641) Update Lock Files 2024 (2641) (@atharva-2001) - [2638](https://github.com/tardis-sn/tardis/pull/2638) Move RPacketTracker class to a new file packet_trackers.py (2638) (@Sumit112192) - [2630](https://github.com/tardis-sn/tardis/pull/2630) Added HDF documentation. (2630) (@airvzxf) - [2573](https://github.com/tardis-sn/tardis/pull/2573) Bugfix: Added a conditional statement and changed the error type that was being handled in `tardis.io.model_reader.read_uniform_abundances`. (2573) (@KC210404) - [2631](https://github.com/tardis-sn/tardis/pull/2631) Edit Generation Tests (2631) (@atharva-2001) ### release-2024.06.03 (2024/06/03 08:25) - [2639](https://github.com/tardis-sn/tardis/pull/2639) Pre-release 2024.06.02 (2639) (@tardis-bot) - [2628](https://github.com/tardis-sn/tardis/pull/2628) Updating actions to their latest version (2628) (@KasukabeDefenceForce) - [2633](https://github.com/tardis-sn/tardis/pull/2633) Fixed the imported modules. (2633) (@airvzxf) - [2632](https://github.com/tardis-sn/tardis/pull/2632) Removing checkout to the tardis repo step from setup lfs workflow (2632) (@KasukabeDefenceForce) ### release-2024.05.28 (2024/05/28 06:24) - [2627](https://github.com/tardis-sn/tardis/pull/2627) Pre-release 2024.05.26 (2627) (@tardis-bot) - [2624](https://github.com/tardis-sn/tardis/pull/2624) Updating the docs to use local atomic data (2624) (@KasukabeDefenceForce) - [2607](https://github.com/tardis-sn/tardis/pull/2607) Remove DokuWiki Code (2607) (@atharva-2001) - [2584](https://github.com/tardis-sn/tardis/pull/2584) PacketSource should contain `.to_hdf()` method (2584) (@atharva-2001) - [2603](https://github.com/tardis-sn/tardis/pull/2603) NumberDensity as Input to plasma (2603) (@wkerzendorf) - [2623](https://github.com/tardis-sn/tardis/pull/2623) Revert "Updating the worfklow to use atomic data from cache rather th… (2623) (@KasukabeDefenceForce) - [2621](https://github.com/tardis-sn/tardis/pull/2621) Fixing PR checkout in build docs job (2621) (@KasukabeDefenceForce) - [2618](https://github.com/tardis-sn/tardis/pull/2618) Fixing build docs yaml to detect branches on forks (2618) (@KasukabeDefenceForce) - [2619](https://github.com/tardis-sn/tardis/pull/2619) Fixed #2564 by bringing back the image from a previous commit (2619) (@Sumit112192) - [2611](https://github.com/tardis-sn/tardis/pull/2611) Converted the reference data to regression in test TARDIS full (2611) (@airvzxf) ### release-2024.05.12 (2024/05/11 21:05) - [2614](https://github.com/tardis-sn/tardis/pull/2614) Pre-release 2024.05.12 (2614) (@tardis-bot) - [2587](https://github.com/tardis-sn/tardis/pull/2587) Trigger docs only when something inside the docs folder changed (2587) (@KasukabeDefenceForce) - [2560](https://github.com/tardis-sn/tardis/pull/2560) Bug t radiative (2560) (@Sumit112192) - [2610](https://github.com/tardis-sn/tardis/pull/2610) LFS submodule error fix (2610) (@atharva-2001) - [2605](https://github.com/tardis-sn/tardis/pull/2605) Move montecarlo to transport and flatten montecarlo numba (2605) (@andrewfullard) - [2565](https://github.com/tardis-sn/tardis/pull/2565) GSoC 2024 | Benchmark | First objective | Israel Roldan (2565) (@airvzxf) ### release-2024.05.05 (2024/05/04 20:56) - [2606](https://github.com/tardis-sn/tardis/pull/2606) Pre-release 2024.05.05 (2606) (@tardis-bot) - [2561](https://github.com/tardis-sn/tardis/pull/2561) Documentation typo (2561) (@Sumit112192) - [2598](https://github.com/tardis-sn/tardis/pull/2598) Only Run Benchmarks Workflow When Owner is `tardis-sn` (2598) (@atharva-2001) - [2589](https://github.com/tardis-sn/tardis/pull/2589) Solve Duplicate Code in GitHub Action Workflows (2589) (@atharva-2001) - [2528](https://github.com/tardis-sn/tardis/pull/2528) Convergence plot correction: Use step plots (2528) (@sarthak-dv) - [2546](https://github.com/tardis-sn/tardis/pull/2546) Gamma-ray packet source refactor (2546) (@andrewfullard) - [2577](https://github.com/tardis-sn/tardis/pull/2577) Abundance widget bug fix (2577) (@Sumit112192) - [2597](https://github.com/tardis-sn/tardis/pull/2597) Modify Update Refdata to Push Regression Data Changes (2597) (@atharva-2001) - [2595](https://github.com/tardis-sn/tardis/pull/2595) Fixes IntegrationError causing refdata generation failure (2595) (@andrewfullard) - [2562](https://github.com/tardis-sn/tardis/pull/2562) Reference Data Generation Fixes (2562) (@atharva-2001) ### release-2024.04.21 (2024/04/20 20:45) - [2593](https://github.com/tardis-sn/tardis/pull/2593) Pre-release 2024.04.21 (2593) (@tardis-bot) - [2525](https://github.com/tardis-sn/tardis/pull/2525) Montecarlo configuration refactor (2525) (@andrewfullard) - [2578](https://github.com/tardis-sn/tardis/pull/2578) Updating embedded links in docs with new file names "tutorial_" and "how_to_" (2578) (@erinvisser) - [2509](https://github.com/tardis-sn/tardis/pull/2509) Precommit (2509) (@ntchen) - [2580](https://github.com/tardis-sn/tardis/pull/2580) Removing flake8 job. (2580) (@KasukabeDefenceForce) ### release-2024.04.14 (2024/04/13 20:54) - [2583](https://github.com/tardis-sn/tardis/pull/2583) Pre-release 2024.04.14 (2583) (@tardis-bot) - [2328](https://github.com/tardis-sn/tardis/pull/2328) Grotrian diagram IPyWidget functionality (2328) (@AyushiDaksh) ### release-2024.04.08 (2024/04/08 09:41) - [2576](https://github.com/tardis-sn/tardis/pull/2576) Pre-release 2024.04.07 (2576) (@tardis-bot) - [2563](https://github.com/tardis-sn/tardis/pull/2563) Recategorizing tutorials as how-to guides to follow diataxis structure (2563) (@erinvisser) - [2542](https://github.com/tardis-sn/tardis/pull/2542) Consistent units in packet source (2542) (@andrewfullard) - [2574](https://github.com/tardis-sn/tardis/pull/2574) Updated helium nlte page in docs with in-text citation (2574) (@erinvisser) - [2552](https://github.com/tardis-sn/tardis/pull/2552) Multiindex dataframe (2552) (@Knights-Templars) ### release-2024.04.01 (2024/04/01 10:03) - [2566](https://github.com/tardis-sn/tardis/pull/2566) Pre-release 2024.03.31 (2566) (@tardis-bot) - [2349](https://github.com/tardis-sn/tardis/pull/2349) Implemented Model Reader for CMFGen example (Also refactored Stella Reader) (2349) (@) - [2554](https://github.com/tardis-sn/tardis/pull/2554) Remove Azure Compare Refdata Pipeline (2554) (@atharva-2001) - [2555](https://github.com/tardis-sn/tardis/pull/2555) corrected blackbody luminosity density equation (2555) (@CePowers) - [2556](https://github.com/tardis-sn/tardis/pull/2556) fixing typos, including pytest issue (2556) (@erinvisser) - [2535](https://github.com/tardis-sn/tardis/pull/2535) Path.replace bug (2535) (@Sumit112192) - [2553](https://github.com/tardis-sn/tardis/pull/2553) Fix Cache IDs in Tests Workflow (2553) (@atharva-2001) ### release-2024.03.18 (2024/03/18 09:58) - [2551](https://github.com/tardis-sn/tardis/pull/2551) Pre-release 2024.03.17 (2551) (@tardis-bot) - [2253](https://github.com/tardis-sn/tardis/pull/2253) Fix for widgets displaying code in commandline (2253) (@shreyas3156) - [2529](https://github.com/tardis-sn/tardis/pull/2529) PR to separate main gamma ray loop (2529) (@Knights-Templars) - [2541](https://github.com/tardis-sn/tardis/pull/2541) Fix units for virtual packet properties in MonteCarloTransportState (2541) (@sarthak-dv) - [2533](https://github.com/tardis-sn/tardis/pull/2533) Fix broken URL in generating_widgets.ipynb (2533) (@sarthak-dv) ### release-2024.03.11 (2024/03/11 09:31) - [2536](https://github.com/tardis-sn/tardis/pull/2536) Pre-release 2024.03.10 (2536) (@tardis-bot) - [2522](https://github.com/tardis-sn/tardis/pull/2522) prevent float overflow when calculating He I population (2522) (@DeerWhale) - [2524](https://github.com/tardis-sn/tardis/pull/2524) Update index.rst (2524) (@wkerzendorf) ### release-2024.02.19 (2024/02/19 09:21) - [2521](https://github.com/tardis-sn/tardis/pull/2521) Pre-release 2024.02.18 (2521) (@tardis-bot) - [2520](https://github.com/tardis-sn/tardis/pull/2520) update the lock file link in doc (2520) (@DeerWhale) ### release-2024.02.11 (2024/02/10 19:45) - [2517](https://github.com/tardis-sn/tardis/pull/2517) Pre-release 2024.02.11 (2517) (@tardis-bot) - [2460](https://github.com/tardis-sn/tardis/pull/2460) update installation documentation for tardis (2460) (@erinvisser) - [2516](https://github.com/tardis-sn/tardis/pull/2516) fixed the difference between the power of pi in code and function above (2516) (@erinvisser) - [2504](https://github.com/tardis-sn/tardis/pull/2504) Update number of shells in SimulationState (2504) (@DeerWhale) - [2501](https://github.com/tardis-sn/tardis/pull/2501) Fix/nlte ionization matrix (2501) (@wkerzendorf) - [2512](https://github.com/tardis-sn/tardis/pull/2512) Estimators restructure cleanup (2512) (@andrewfullard) - [2492](https://github.com/tardis-sn/tardis/pull/2492) Restructure/separate transport state (2492) (@wkerzendorf) - [2506](https://github.com/tardis-sn/tardis/pull/2506) Remove workflow file that installs TARDIS using conda (2506) (@atharva-2001) - [2476](https://github.com/tardis-sn/tardis/pull/2476) Restructure/transport solver (2476) (@wkerzendorf) ### release-2024.01.14 (2024/01/14 10:26) - [2503](https://github.com/tardis-sn/tardis/pull/2503) Pre-release 2024.01.14 (2503) (@tardis-bot) ### release-2024.01.08 (2024/01/08 09:37) - [2502](https://github.com/tardis-sn/tardis/pull/2502) Pre-release 2024.01.07 (2502) (@tardis-bot) - [2473](https://github.com/tardis-sn/tardis/pull/2473) A syrupy replacement (2473) (@wkerzendorf) - [2474](https://github.com/tardis-sn/tardis/pull/2474) Restructure radiation field (2474) (@wkerzendorf) - [2455](https://github.com/tardis-sn/tardis/pull/2455) Use Mamba Instead of Conda When Running Benchmarks (2455) (@atharva-2001) - [2490](https://github.com/tardis-sn/tardis/pull/2490) Fix viz sdec (2490) (@AlexHls) - [2445](https://github.com/tardis-sn/tardis/pull/2445) Restructure/abundance (2445) (@wkerzendorf) - [2479](https://github.com/tardis-sn/tardis/pull/2479) Check if atom data download exists (2479) (@wkerzendorf) - [2448](https://github.com/tardis-sn/tardis/pull/2448) Decay energy chain (2448) (@Knights-Templars) - [2478](https://github.com/tardis-sn/tardis/pull/2478) Add ruff rules and docs (2478) (@AlexHls) - [2459](https://github.com/tardis-sn/tardis/pull/2459) Update plasma configuration documentation (2459) (@AlexHls) ### release-2023.11.26 (2023/11/26 10:41) - [2477](https://github.com/tardis-sn/tardis/pull/2477) Pre-release 2023.11.26 (2477) (@tardis-bot) - [2471](https://github.com/tardis-sn/tardis/pull/2471) Reading in decay radiation data in atom data (2471) (@Knights-Templars) - [2470](https://github.com/tardis-sn/tardis/pull/2470) Add astropy import guard (2470) (@AlexHls) - [2413](https://github.com/tardis-sn/tardis/pull/2413) Tests Plasma Using Syrupy (2413) (@atharva-2001) ### release-2023.11.05 (2023/11/04 22:34) - [2466](https://github.com/tardis-sn/tardis/pull/2466) Pre-release 2023.11.05 (2466) (@tardis-bot) - [2461](https://github.com/tardis-sn/tardis/pull/2461) NLTE Ionization solver polish (2461) (@AlexHls) - [2462](https://github.com/tardis-sn/tardis/pull/2462) Update docstr-cov.yml to fix failing action (2462) (@andrewfullard) - [2458](https://github.com/tardis-sn/tardis/pull/2458) Enable nlte ionization as plasma component (2458) (@AlexHls) - [2453](https://github.com/tardis-sn/tardis/pull/2453) Fix bug in relativistic packet source (2453) (@chvogl) - [2457](https://github.com/tardis-sn/tardis/pull/2457) Add verbose assert to NLTE rate equation (2457) (@AlexHls) ### release-2023.10.20 (2023/10/20 09:48) - [2452](https://github.com/tardis-sn/tardis/pull/2452) Pre-release 2023.10.20 (2452) (@tardis-bot) - [2432](https://github.com/tardis-sn/tardis/pull/2432) Remove lock file creation from pre release workflow (2432) (@atharva-2001) - [2450](https://github.com/tardis-sn/tardis/pull/2450) Add FAQ section to documentation (2450) (@AlexHls) - [2422](https://github.com/tardis-sn/tardis/pull/2422) restructure of geometry (2422) (@wkerzendorf) - [2441](https://github.com/tardis-sn/tardis/pull/2441) Change glob patterns in `setup.cfg` (2441) (@atharva-2001) - [2447](https://github.com/tardis-sn/tardis/pull/2447) Fix numba parallel issues (2447) (@AlexHls) - [2443](https://github.com/tardis-sn/tardis/pull/2443) Fix duplicate entries in continuum line list (2443) (@AlexHls) - [2434](https://github.com/tardis-sn/tardis/pull/2434) Added a function to calculate shell masses (2434) (@Knights-Templars) - [2425](https://github.com/tardis-sn/tardis/pull/2425) Modified how setup input energy takes isotope name. Earlier it was ga… (2425) (@Knights-Templars) - [2428](https://github.com/tardis-sn/tardis/pull/2428) add linelist exposure to atom data and reader, built on current (2428) (@jvshields) - [2426](https://github.com/tardis-sn/tardis/pull/2426) Disabled formal integral for continuum interaction (2426) (@AlexHls) - [2424](https://github.com/tardis-sn/tardis/pull/2424) Ignore tests in docstr coverage (2424) (@atharva-2001) - [2421](https://github.com/tardis-sn/tardis/pull/2421) rename simulation_state2 (2421) (@wkerzendorf) - [2417](https://github.com/tardis-sn/tardis/pull/2417) rename RadialModel1D to SimulationState (2417) (@wkerzendorf) - [2415](https://github.com/tardis-sn/tardis/pull/2415) In gamma ray code : Changed times to np.geomspace (2415) (@Knights-Templars) - [2410](https://github.com/tardis-sn/tardis/pull/2410) upgrading env in 2022 (2410) (@wkerzendorf) ### release-2023.09.17 (2023/09/16 20:51) - [2411](https://github.com/tardis-sn/tardis/pull/2411) Pre-release 2023.09.17 (2411) (@tardis-bot) - [2407](https://github.com/tardis-sn/tardis/pull/2407) Allow Simulation Tests to Run Independently (2407) (@atharva-2001) ### release-2023.09.10 (2023/09/09 22:43) - [2408](https://github.com/tardis-sn/tardis/pull/2408) Pre-release 2023.09.10 (2408) (@tardis-bot) - [2288](https://github.com/tardis-sn/tardis/pull/2288) Add documentation for LFS caching, The Bridge and Save Atomic Files Workflow (2288) (@atharva-2001) ### release-2023.09.03 (2023/09/02 20:47) - [2406](https://github.com/tardis-sn/tardis/pull/2406) Pre-release 2023.09.03 (2406) (@tardis-bot) - [2393](https://github.com/tardis-sn/tardis/pull/2393) Restructure readers (2393) (@wkerzendorf) - [2404](https://github.com/tardis-sn/tardis/pull/2404) Pin Sphinx to <= 7.1 (2404) (@atharva-2001) - [2403](https://github.com/tardis-sn/tardis/pull/2403) Reading fully ionized species with species_string_to_tuple (2403) (@sonachitchyan) - [2398](https://github.com/tardis-sn/tardis/pull/2398) Disable Parallelization (2398) (@atharva-2001) - [2401](https://github.com/tardis-sn/tardis/pull/2401) `asv run` continue on error (2401) (@atharva-2001) - [2399](https://github.com/tardis-sn/tardis/pull/2399) Update documentation about the parallelization problem (2399) (@atharva-2001) - [2400](https://github.com/tardis-sn/tardis/pull/2400) Add `__init__.py` in `radiation_field` subpackage (2400) (@atharva-2001) - [2396](https://github.com/tardis-sn/tardis/pull/2396) Fix for Slack message (2396) (@epassaro) ### release-2023.08.20 (2023/08/19 20:43) - [2397](https://github.com/tardis-sn/tardis/pull/2397) Pre-release 2023.08.20 (2397) (@tardis-bot) - [2338](https://github.com/tardis-sn/tardis/pull/2338) Test conda-forge package installation (2338) (@epassaro) - [2224](https://github.com/tardis-sn/tardis/pull/2224) Fix references and typos in documentation (2224) (@shreyas3156) - [2385](https://github.com/tardis-sn/tardis/pull/2385) Creating collisional excitation/deexcitation coefficient matrix for NLTE excitation treatment (2385) (@sonachitchyan) - [2142](https://github.com/tardis-sn/tardis/pull/2142) added documentation for using particular refdata files for unit testing (2142) (@jayantbhakar) - [2395](https://github.com/tardis-sn/tardis/pull/2395) Fixing the shape of the solution vector to be accurate in NLTE excitation treatment (2395) (@sonachitchyan) - [2353](https://github.com/tardis-sn/tardis/pull/2353) Benchmarks Comments and Atom Data Cache BugFix (2353) (@atharva-2001) - [2386](https://github.com/tardis-sn/tardis/pull/2386) Integrate density in state object (2386) (@wkerzendorf) - [2392](https://github.com/tardis-sn/tardis/pull/2392) Post-release 2023.08.13 (2392) (@tardis-bot) ### release-2023.08.13 (2023/08/13 17:04) - [2391](https://github.com/tardis-sn/tardis/pull/2391) Pre-release 2023.08.13 (2391) (@tardis-bot) - [2379](https://github.com/tardis-sn/tardis/pull/2379) Tests for doppler factor functions (2379) (@sonachitchyan) - [2348](https://github.com/tardis-sn/tardis/pull/2348) Fixes gamma-ray notebook to run more easily (2348) (@andrewfullard) - [2381](https://github.com/tardis-sn/tardis/pull/2381) Removed hardcoding of RPacket radius (2381) (@) - [2384](https://github.com/tardis-sn/tardis/pull/2384) Post-release 2023.08.06 (2384) (@tardis-bot) ### release-2023.08.06 (2023/08/05 20:43) - [2383](https://github.com/tardis-sn/tardis/pull/2383) Pre-release 2023.08.06 (2383) (@tardis-bot) - [2382](https://github.com/tardis-sn/tardis/pull/2382) Remove outdated docstring from test_montecarlo.py (2382) (@chvogl) - [2376](https://github.com/tardis-sn/tardis/pull/2376) Add init.py to energy input module (2376) (@andrewfullard) - [2373](https://github.com/tardis-sn/tardis/pull/2373) Post-release 2023.07.30 (2373) (@tardis-bot) ### release-2023.07.30 (2023/07/29 20:47) - [2372](https://github.com/tardis-sn/tardis/pull/2372) Pre-release 2023.07.30 (2372) (@tardis-bot) - [2365](https://github.com/tardis-sn/tardis/pull/2365) integrate radiation field (2365) (@wkerzendorf) - [2371](https://github.com/tardis-sn/tardis/pull/2371) Prevent empty convergence plot Error when n_iteration=1 (2371) (@DeerWhale) - [2369](https://github.com/tardis-sn/tardis/pull/2369) Post-release 2023.07.23 (2369) (@tardis-bot) ### release-2023.07.23 (2023/07/23 10:47) - [2368](https://github.com/tardis-sn/tardis/pull/2368) Pre-release 2023.07.23 (2368) (@tardis-bot) - [2367](https://github.com/tardis-sn/tardis/pull/2367) integrate new packetsource (2367) (@wkerzendorf) - [2366](https://github.com/tardis-sn/tardis/pull/2366) New packet source (extending 2352) (2366) (@wkerzendorf) - [2354](https://github.com/tardis-sn/tardis/pull/2354) removed duplicate entry of afloers (2354) (@afloers) - [2360](https://github.com/tardis-sn/tardis/pull/2360) restructure configuration object (2360) (@wkerzendorf) - [2361](https://github.com/tardis-sn/tardis/pull/2361) add deprecated decorator (2361) (@wkerzendorf) - [2359](https://github.com/tardis-sn/tardis/pull/2359) Rename NumbaPlasma to OpacityState (2359) (@andrewfullard) - [2313](https://github.com/tardis-sn/tardis/pull/2313) Grotrian Diagram Plot Appearance (2313) (@AyushiDaksh) - [2357](https://github.com/tardis-sn/tardis/pull/2357) Post-release 2023.07.16 (2357) (@tardis-bot) ### release-2023.07.16 (2023/07/16 15:15) - [2356](https://github.com/tardis-sn/tardis/pull/2356) Pre-release 2023.07.16 (2356) (@tardis-bot) - [2355](https://github.com/tardis-sn/tardis/pull/2355) Fixed spelling mistake in Wien's displacement law (2355) (@afloers) - [2351](https://github.com/tardis-sn/tardis/pull/2351) Post-release 2023.07.09 (2351) (@tardis-bot) ### release-2023.07.09 (2023/07/09 12:30) - [2350](https://github.com/tardis-sn/tardis/pull/2350) Pre-release 2023.07.09 (2350) (@tardis-bot) - [2347](https://github.com/tardis-sn/tardis/pull/2347) Fix frame transformations of continuum opacity (2347) (@chvogl) - [2139](https://github.com/tardis-sn/tardis/pull/2139) Gamma ray refactor (2139) (@andrewfullard) - [2327](https://github.com/tardis-sn/tardis/pull/2327) Refactor Model Reader on the Stella example (2327) (@wkerzendorf) - [2346](https://github.com/tardis-sn/tardis/pull/2346) Post-release 2023.07.02 (2346) (@tardis-bot) ### release-2023.07.02 (2023/07/01 20:49) - [2345](https://github.com/tardis-sn/tardis/pull/2345) Pre-release 2023.07.02 (2345) (@tardis-bot) - [2344](https://github.com/tardis-sn/tardis/pull/2344) Make MontecarloTransport and montecarlo_numba track the last line interaction shell ids for real and virtual packets (2344) (@AyushiDaksh) - [2343](https://github.com/tardis-sn/tardis/pull/2343) Rename RPacketTracker.interact_id to RPacketTracker.num_interactions (2343) (@AyushiDaksh) - [2221](https://github.com/tardis-sn/tardis/pull/2221) Fix typos in repository (2221) (@AyushiDaksh) - [2330](https://github.com/tardis-sn/tardis/pull/2330) Benchmarks Push To Repo Bug Fix (2330) (@atharva-2001) - [2335](https://github.com/tardis-sn/tardis/pull/2335) Dispatch Compare Refdata Event to Refdata Repo (2335) (@atharva-2001) - [2305](https://github.com/tardis-sn/tardis/pull/2305) Fix to helium indexing in NLTE (2305) (@aoifeboyle) - [2341](https://github.com/tardis-sn/tardis/pull/2341) Remove duplicated continuum interaction code (2341) (@chvogl) - [2340](https://github.com/tardis-sn/tardis/pull/2340) Post-release 2023.06.25 (2340) (@tardis-bot) ### release-2023.06.25 (2023/06/25 12:43) - [2339](https://github.com/tardis-sn/tardis/pull/2339) Pre-release 2023.06.25 (2339) (@tardis-bot) - [2337](https://github.com/tardis-sn/tardis/pull/2337) Separate the last iteration from Simulation.run() (2337) (@) - [2219](https://github.com/tardis-sn/tardis/pull/2219) Remove dead (unused) fixtures (2219) (@) - [2336](https://github.com/tardis-sn/tardis/pull/2336) Fix doc failure after restructuring packet source seed (2336) (@) - [2329](https://github.com/tardis-sn/tardis/pull/2329) Move packet seeds logic into PacketSource instead of MontecarloTransport (2329) (@) - [2326](https://github.com/tardis-sn/tardis/pull/2326) Track bf and ff opacities with vpackets (2326) (@ymatsumu) - [2334](https://github.com/tardis-sn/tardis/pull/2334) Post-release 2023.06.18 (2334) (@tardis-bot) ### release-2023.06.18 (2023/06/17 20:48) - [2333](https://github.com/tardis-sn/tardis/pull/2333) Pre-release 2023.06.18 (2333) (@tardis-bot) - [2311](https://github.com/tardis-sn/tardis/pull/2311) Make nthreads a property of MontecarloRunner instead of Simulation class (2311) (@) - [2260](https://github.com/tardis-sn/tardis/pull/2260) [WIP] Basic Benchmarks Using ASV (2260) (@atharva-2001) - [2317](https://github.com/tardis-sn/tardis/pull/2317) Rename MontecarloRunner to MontecarloTransport (2317) (@) - [2307](https://github.com/tardis-sn/tardis/pull/2307) Post-release 2023.06.04 (2307) (@tardis-bot) ### release-2023.06.04 (2023/06/03 20:53) - [2306](https://github.com/tardis-sn/tardis/pull/2306) Pre-release 2023.06.04 (2306) (@tardis-bot) - [2302](https://github.com/tardis-sn/tardis/pull/2302) Disable HDF5 file locking on documentation workflow (2302) (@epassaro) - [2300](https://github.com/tardis-sn/tardis/pull/2300) Post-release 2023.05.28 (2300) (@tardis-bot) ### release-2023.05.28 (2023/05/27 20:51) - [2299](https://github.com/tardis-sn/tardis/pull/2299) Pre-release 2023.05.28 (2299) (@tardis-bot) - [2298](https://github.com/tardis-sn/tardis/pull/2298) Bump hdf5 to v1.12 (2298) (@epassaro) - [2297](https://github.com/tardis-sn/tardis/pull/2297) Post-release 2023.05.21 (2297) (@tardis-bot) ### release-2023.05.21 (2023/05/20 20:53) - [2296](https://github.com/tardis-sn/tardis/pull/2296) Pre-release 2023.05.21 (2296) (@tardis-bot) - [2295](https://github.com/tardis-sn/tardis/pull/2295) Post-release 2023.05.15 (2295) (@tardis-bot) ### release-2023.05.15 (2023/05/15 10:10) - [2294](https://github.com/tardis-sn/tardis/pull/2294) Pre-release 2023.05.14 (2294) (@tardis-bot) - [2290](https://github.com/tardis-sn/tardis/pull/2290) Post-release 2023.05.07 (2290) (@tardis-bot) ### release-2023.05.07 (2023/05/07 13:47) - [2289](https://github.com/tardis-sn/tardis/pull/2289) Pre-release 2023.05.07 (2289) (@tardis-bot) - [2201](https://github.com/tardis-sn/tardis/pull/2201) Changing construction of the first guess and coefficient matrices in NLTE solver (2201) (@sonachitchyan) - [2287](https://github.com/tardis-sn/tardis/pull/2287) Post-release 2023.04.30 (2287) (@tardis-bot) ### release-2023.04.30 (2023/04/30 13:26) - [2286](https://github.com/tardis-sn/tardis/pull/2286) Pre-release 2023.04.30 (2286) (@tardis-bot) - [2284](https://github.com/tardis-sn/tardis/pull/2284) Save LFS Objects `always()` (2284) (@atharva-2001) - [2280](https://github.com/tardis-sn/tardis/pull/2280) Prevent tests from running on forks (2280) (@atharva-2001) - [2283](https://github.com/tardis-sn/tardis/pull/2283) Post-release 2023.04.23 (2283) (@tardis-bot) ### release-2023.04.23 (2023/04/22 20:49) - [2282](https://github.com/tardis-sn/tardis/pull/2282) Pre-release 2023.04.23 (2282) (@tardis-bot) - [2121](https://github.com/tardis-sn/tardis/pull/2121) adding nonhomologous_grid.py (2121) (@sonachitchyan) - [2278](https://github.com/tardis-sn/tardis/pull/2278) Post-release 2023.04.16 (2278) (@tardis-bot) ### release-2023.04.16 (2023/04/15 20:47) - [2277](https://github.com/tardis-sn/tardis/pull/2277) Pre-release 2023.04.16 (2277) (@tardis-bot) - [2267](https://github.com/tardis-sn/tardis/pull/2267) Check MD5 sums of downloaded atom data (2267) (@epassaro) - [2273](https://github.com/tardis-sn/tardis/pull/2273) Fixes for update reference data workflow (2273) (@epassaro) - [2275](https://github.com/tardis-sn/tardis/pull/2275) Post-release 2023.04.09 (2275) (@tardis-bot) ### release-2023.04.09 (2023/04/08 20:44) - [2274](https://github.com/tardis-sn/tardis/pull/2274) Pre-release 2023.04.09 (2274) (@tardis-bot) - [2249](https://github.com/tardis-sn/tardis/pull/2249) Port update reference data pipeline to GitHub Actions (2249) (@epassaro) - [2233](https://github.com/tardis-sn/tardis/pull/2233) Added documentation for parallel fixes for estimators (2233) (@1e9abhi1e10) - [2250](https://github.com/tardis-sn/tardis/pull/2250) Arepo mass average fix (2250) (@AlexHls) - [2257](https://github.com/tardis-sn/tardis/pull/2257) Post-release 2023.03.26 (2257) (@tardis-bot) ### release-2023.03.26 (2023/03/26 01:55) - [2256](https://github.com/tardis-sn/tardis/pull/2256) Pre-release 2023.03.26 (2256) (@tardis-bot) - [2248](https://github.com/tardis-sn/tardis/pull/2248) Post-release 2023.03.20 (2248) (@tardis-bot) ### release-2023.03.20 (2023/03/20 12:39) - [2247](https://github.com/tardis-sn/tardis/pull/2247) Pre-release 2023.03.20 (2247) (@tardis-bot) - [2246](https://github.com/tardis-sn/tardis/pull/2246) Fix team reviewers on workflows (2246) (@epassaro) - [2237](https://github.com/tardis-sn/tardis/pull/2237) MonteCarlo packet progress bar completes to 100% (2237) (@shreyas3156) - [2243](https://github.com/tardis-sn/tardis/pull/2243) Fix for release dates (2243) (@epassaro) - [2242](https://github.com/tardis-sn/tardis/pull/2242) Fix for automerge (2242) (@epassaro) - [2236](https://github.com/tardis-sn/tardis/pull/2236) Docs Fix: Download Atom Data in rpacket_tracking.ipynb (2236) (@atharva-2001) - [2204](https://github.com/tardis-sn/tardis/pull/2204) Add docstrings to subpackages (2204) (@PommesFrittes) - [2223](https://github.com/tardis-sn/tardis/pull/2223) Post-release 2023.02.27 (2223) (@tardis-bot) ### release-2023.02.27 (2023/02/27 08:53) - [2222](https://github.com/tardis-sn/tardis/pull/2222) Pre-release 2023.02.26 (2222) (@tardis-bot) - [2214](https://github.com/tardis-sn/tardis/pull/2214) Correct the description of 'no_of_packets' in Monte Carlo Configuration (2214) (@1e9abhi1e10) - [2213](https://github.com/tardis-sn/tardis/pull/2213) Post-release 2023.02.20 (2213) (@tardis-bot) - [2194](https://github.com/tardis-sn/tardis/pull/2194) Cache LFS objects in the tests workflow (2194) (@atharva-2001) ### release-2023.02.2 (2023/02/20 10:04) - [2211](https://github.com/tardis-sn/tardis/pull/2211) Pre-release 2023.02.19 (2211) (@tardis-bot) - [2210](https://github.com/tardis-sn/tardis/pull/2210) Post-release 2023.02.16 (2210) (@tardis-bot) ### release-2023.02.16 (2023/02/16 09:18) - [2208](https://github.com/tardis-sn/tardis/pull/2208) Pre-release 2023.02.12 (2208) (@tardis-bot) - [2190](https://github.com/tardis-sn/tardis/pull/2190) Add version tag to simulation objects (2190) (@krimmskramms) - [2206](https://github.com/tardis-sn/tardis/pull/2206) Post-release 2023.02.06 (2206) (@tardis-bot) ### release-2023.02.06 (2023/02/06 10:00) - [2205](https://github.com/tardis-sn/tardis/pull/2205) Pre-release 2023.02.05 (2205) (@tardis-bot) - [2200](https://github.com/tardis-sn/tardis/pull/2200) Fix config reader tests (2200) (@chvogl) - [2195](https://github.com/tardis-sn/tardis/pull/2195) Reading nlte_excitation_species from config (2195) (@sonachitchyan) - [2198](https://github.com/tardis-sn/tardis/pull/2198) Fixing test_store_runner_to_hdf (2198) (@sonachitchyan) - [2185](https://github.com/tardis-sn/tardis/pull/2185) Rename T variables to temperature (2185) (@1e9abhi1e10) - [2171](https://github.com/tardis-sn/tardis/pull/2171) Adding nlte solver (2171) (@sonachitchyan) - [2187](https://github.com/tardis-sn/tardis/pull/2187) Downloading nlte_atom_data in ref data (2187) (@sonachitchyan) - [2188](https://github.com/tardis-sn/tardis/pull/2188) Post-release 2023.01.11 (2188) (@tardis-bot) ### release-2023.01.11 (2023/01/11 11:25) - [2186](https://github.com/tardis-sn/tardis/pull/2186) Pre-release 2023.01.08 (2186) (@tardis-bot) - [2182](https://github.com/tardis-sn/tardis/pull/2182) Post-release 2022.12.26 (2182) (@tardis-bot) ### release-2022.12.26 (2022/12/26 09:51) - [2180](https://github.com/tardis-sn/tardis/pull/2180) Pre-release 2022.12.25 (2180) (@tardis-bot) - [2170](https://github.com/tardis-sn/tardis/pull/2170) Add missing __init__.py files to transport and geometry subpackages (2170) (@epassaro) - [2173](https://github.com/tardis-sn/tardis/pull/2173) Post-release 2022.12.12 (2173) (@tardis-bot) ### release-2022.12.12 (2022/12/12 10:02) - [2172](https://github.com/tardis-sn/tardis/pull/2172) Pre-release 2022.12.11 (2172) (@tardis-bot) - [2150](https://github.com/tardis-sn/tardis/pull/2150) Kilonova missing zeta (2150) (@gleck97) - [2158](https://github.com/tardis-sn/tardis/pull/2158) NLTE jacobian matrix (2158) (@sonachitchyan) - [2154](https://github.com/tardis-sn/tardis/pull/2154) Fixing typos for nlte ion (2154) (@sonachitchyan) - [2159](https://github.com/tardis-sn/tardis/pull/2159) Fix relativistic packet initialization (2159) (@chvogl) ### release-2022.11.21 (2022/11/21 10:15) - [2160](https://github.com/tardis-sn/tardis/pull/2160) Pre-release 2022.11.20 (2160) (@tardis-bot) - [2156](https://github.com/tardis-sn/tardis/pull/2156) Post-release 2022.11.17 (2156) (@tardis-bot) ### release-2022.11.17 (2022/11/17 13:45) - [2155](https://github.com/tardis-sn/tardis/pull/2155) Pre-release 2022.11.17 (2155) (@tardis-bot) - [2152](https://github.com/tardis-sn/tardis/pull/2152) Set specific qgrid feedstock version (2152) (@andrewfullard) - [2140](https://github.com/tardis-sn/tardis/pull/2140) Adding nlte_rate_equation_solver.py (2140) (@sonachitchyan) - [2147](https://github.com/tardis-sn/tardis/pull/2147) Pin setuptools_scm to v6 (2147) (@epassaro) - [2127](https://github.com/tardis-sn/tardis/pull/2127) Possible fix for prerelease workflow (2127) (@andrewfullard) - [2146](https://github.com/tardis-sn/tardis/pull/2146) Add missing cell to download atom data (2146) (@epassaro) - [2136](https://github.com/tardis-sn/tardis/pull/2136) Restructuring NumbaModel (2136) (@satwik-kambham) - [2132](https://github.com/tardis-sn/tardis/pull/2132) Adding rate matrix index (2132) (@sonachitchyan) - [2130](https://github.com/tardis-sn/tardis/pull/2130) moved helium nlte to a seperate file `helium_nlte.py` (2130) (@sonachitchyan) - [2124](https://github.com/tardis-sn/tardis/pull/2124) Cleaning model state (2124) (@satwik-kambham) - [2096](https://github.com/tardis-sn/tardis/pull/2096) Small bug fix for He NLTE. (2096) (@) - [1923](https://github.com/tardis-sn/tardis/pull/1923) Fixing latex_label Parameter within write_to_tex function (1923) (@bartnikm) - [2095](https://github.com/tardis-sn/tardis/pull/2095) Removing outdated documentation and creating developer tools section (2095) (@isaacgsmith) - [2099](https://github.com/tardis-sn/tardis/pull/2099) Arbitrary isotope decay handling and positronium (2099) (@andrewfullard) - [2118](https://github.com/tardis-sn/tardis/pull/2118) Integrating experimental model state (2118) (@satwik-kambham) - [2120](https://github.com/tardis-sn/tardis/pull/2120) Update arepo docs notebook to be pre-run (2120) (@AlexHls) - [2115](https://github.com/tardis-sn/tardis/pull/2115) added docs for montecarlo packet visualization (2115) (@jayantbhakar) - [2117](https://github.com/tardis-sn/tardis/pull/2117) Runs cells in arepo notebook to avoid downloading files (2117) (@andrewfullard) - [2103](https://github.com/tardis-sn/tardis/pull/2103) New geometry class (2103) (@satwik-kambham) - [2111](https://github.com/tardis-sn/tardis/pull/2111) New TARDIS flowchart and cleaning up physics walkthrough (2111) (@isaacgsmith) - [2098](https://github.com/tardis-sn/tardis/pull/2098) New Composition Class (2098) (@satwik-kambham) - [2108](https://github.com/tardis-sn/tardis/pull/2108) Rework Estimators and Convergence Docs (2108) (@isaacgsmith) - [2105](https://github.com/tardis-sn/tardis/pull/2105) Documentation for Features In-Progress (2105) (@isaacgsmith) - [2107](https://github.com/tardis-sn/tardis/pull/2107) Added positronium notes (2107) (@andrewfullard) - [2091](https://github.com/tardis-sn/tardis/pull/2091) Added interaction type in rpacket_tracker (2091) (@jayantbhakar) - [2110](https://github.com/tardis-sn/tardis/pull/2110) removed scatter function from interaction.py (2110) (@sonachitchyan) - [2106](https://github.com/tardis-sn/tardis/pull/2106) Resturcture ABCs import from collections module (2106) (@blackbird7112) - [2093](https://github.com/tardis-sn/tardis/pull/2093) Fixing Docs Warnings (2093) (@isaacgsmith) - [2073](https://github.com/tardis-sn/tardis/pull/2073) rpacket_tracker returns dataframe (2073) (@jayantbhakar) - [2104](https://github.com/tardis-sn/tardis/pull/2104) Re-produced PR 1826 (2104) (@andrewfullard) - [2097](https://github.com/tardis-sn/tardis/pull/2097) Creating new docs building instructions (2097) (@isaacgsmith) - [2088](https://github.com/tardis-sn/tardis/pull/2088) Arepo docs fix (2088) (@AlexHls) - [1941](https://github.com/tardis-sn/tardis/pull/1941) Improved arepo parser (1941) (@AlexHls) - [2026](https://github.com/tardis-sn/tardis/pull/2026) Adding physics introduction to documentation (2026) (@isaacgsmith) - [2084](https://github.com/tardis-sn/tardis/pull/2084) Fix broken links in workflow files and goverance md (2084) (@blackbird7112) - [2083](https://github.com/tardis-sn/tardis/pull/2083) Moved `trace_packet` to tardis tansport (2083) (@Rodot-) - [2082](https://github.com/tardis-sn/tardis/pull/2082) Added documetation on how to compare environment before update (2082) (@jaladh-singhal) - [2076](https://github.com/tardis-sn/tardis/pull/2076) Modified Function Name in Config validator according to PEP8 (2076) (@blackbird7112) - [2062](https://github.com/tardis-sn/tardis/pull/2062) Remove yaml_load_config_file (2062) (@aman1971) - [2052](https://github.com/tardis-sn/tardis/pull/2052) Created a smart HDF Reader which can re-produce simulation object (2052) (@satwik-kambham) - [2070](https://github.com/tardis-sn/tardis/pull/2070) Pre-release 2022.06.26 (2070) (@tardis-bot) - [2069](https://github.com/tardis-sn/tardis/pull/2069) Wait for pull request creation (2069) (@epassaro) - [2067](https://github.com/tardis-sn/tardis/pull/2067) Begin geometry subfolder (2067) (@nolanbrown01) - [2050](https://github.com/tardis-sn/tardis/pull/2050) Update Jsonschema package to V4 (2050) (@blackbird7112) - [2065](https://github.com/tardis-sn/tardis/pull/2065) Continuing geometry restructure (2065) (@nolanbrown01) - [2063](https://github.com/tardis-sn/tardis/pull/2063) Initial geometry restructure (2063) (@nolanbrown01) - [2061](https://github.com/tardis-sn/tardis/pull/2061) Post-release 2022.06.19 (2061) (@tardis-bot) ### release-2022.06.19 (2022/06/18 22:25) - [2060](https://github.com/tardis-sn/tardis/pull/2060) Pre-release 2022.06.19 (2060) (@tardis-bot) - [2036](https://github.com/tardis-sn/tardis/pull/2036) Restructure code to remove the single_packet_seed field (2036) (@blackbird7112) - [2054](https://github.com/tardis-sn/tardis/pull/2054) Auto-merge fixes (2054) (@epassaro) - [2053](https://github.com/tardis-sn/tardis/pull/2053) Change developer installation command (2053) (@epassaro) - [2048](https://github.com/tardis-sn/tardis/pull/2048) Disable profiling page build on pull requests (2048) (@epassaro) - [2042](https://github.com/tardis-sn/tardis/pull/2042) Polish up Quickstart guide (2042) (@epassaro) - [2010](https://github.com/tardis-sn/tardis/pull/2010) Enable automerge on pre and post-release workflows (2010) (@epassaro) - [2046](https://github.com/tardis-sn/tardis/pull/2046) Stop redirecting docs page (2046) (@epassaro) - [2045](https://github.com/tardis-sn/tardis/pull/2045) Add DOI badge to credits section (2045) (@epassaro) - [2047](https://github.com/tardis-sn/tardis/pull/2047) Ignore gamma-ray deposition notebook for now (2047) (@andrewfullard) - [1698](https://github.com/tardis-sn/tardis/pull/1698) Gamma ray propagation (1698) (@andrewfullard) - [2044](https://github.com/tardis-sn/tardis/pull/2044) Post-release 2022.06.05 (2044) (@tardis-bot) ### release-2022.06.05 (2022/06/04 21:07) - [2043](https://github.com/tardis-sn/tardis/pull/2043) Pre-release 2022.06.05 (2043) (@tardis-bot) - [2039](https://github.com/tardis-sn/tardis/pull/2039) Check PEP8 on CI (2039) (@epassaro) - [2037](https://github.com/tardis-sn/tardis/pull/2037) Update README.rst in post-release (2037) (@epassaro) - [2024](https://github.com/tardis-sn/tardis/pull/2024) Added v_inner and v_outer, enable_nonhomologous_expansion for future use in nonhomologous expansion (2024) (@sonachitchyan) - [2038](https://github.com/tardis-sn/tardis/pull/2038) Fix bot aliases in .mailmap (2038) (@epassaro) - [2027](https://github.com/tardis-sn/tardis/pull/2027) Switch from `docstr-coverage` package to `interrogate` in CI pipelines (2027) (@epassaro) - [2020](https://github.com/tardis-sn/tardis/pull/2020) Fixes for CITATION.cff (2020) (@epassaro) - [2033](https://github.com/tardis-sn/tardis/pull/2033) Merge all CI users on .mailmap (2033) (@epassaro) - [2028](https://github.com/tardis-sn/tardis/pull/2028) Rebuild installation page (2028) (@epassaro) - [1921](https://github.com/tardis-sn/tardis/pull/1921) Formal integral documentation (1921) (@isaacgsmith) - [2030](https://github.com/tardis-sn/tardis/pull/2030) Fix estimators parallel (2030) (@Rodot-) - [2019](https://github.com/tardis-sn/tardis/pull/2019) Added compatability to current version of carsus atomic data (2019) (@Rodot-) - [2011](https://github.com/tardis-sn/tardis/pull/2011) Build and cache conda environments with lockfiles (2011) (@epassaro) - [1991](https://github.com/tardis-sn/tardis/pull/1991) Re-write `download_from_url` using Astropy's `download_file` (1991) (@epassaro) - [1992](https://github.com/tardis-sn/tardis/pull/1992) Fix low temperature problem of Van Regemorter approximation (1992) (@chvogl) - [2018](https://github.com/tardis-sn/tardis/pull/2018) Post-release 2022.05.08 (2018) (@tardis-bot) ### release-2022.05.08 (2022/05/07 20:27) - [2016](https://github.com/tardis-sn/tardis/pull/2016) Pre-release 2022.05.08 (2016) (@tardis-bot) - [1996](https://github.com/tardis-sn/tardis/pull/1996) Fixes for compare-refdata pipeline (1996) (@epassaro) - [2012](https://github.com/tardis-sn/tardis/pull/2012) Fix post-release workflow automation (2012) (@epassaro) - [2007](https://github.com/tardis-sn/tardis/pull/2007) Use `pull_request_target` trigger in release workflow (2007) (@epassaro) - [2008](https://github.com/tardis-sn/tardis/pull/2008) Move link_t_rad_t_electron to config file (2008) (@sonachitchyan) - [2009](https://github.com/tardis-sn/tardis/pull/2009) Revert "Removing Levels Index Variable Within Atomic Data Preperation" (2009) (@Rodot-) - [2006](https://github.com/tardis-sn/tardis/pull/2006) Post-release 2022.05.04 (2006) (@tardis-bot) ### release-2022.05.04 (2022/05/04 12:35) - [2005](https://github.com/tardis-sn/tardis/pull/2005) Pre-release 2022.05.04 (2005) (@tardis-bot) - [2003](https://github.com/tardis-sn/tardis/pull/2003) Fix for isotope abundance parsing (2003) (@Rodot-) - [1995](https://github.com/tardis-sn/tardis/pull/1995) Force constant version date length (1995) (@epassaro) - [1999](https://github.com/tardis-sn/tardis/pull/1999) Create TARDIS release workflow (1999) (@epassaro) - [2001](https://github.com/tardis-sn/tardis/pull/2001) Post-release workflow (2001) (@epassaro) - [2000](https://github.com/tardis-sn/tardis/pull/2000) Make docs build in parallel (2000) (@isaacgsmith) - [1998](https://github.com/tardis-sn/tardis/pull/1998) Fix concurrency groups in workflows (1998) (@epassaro) - [1987](https://github.com/tardis-sn/tardis/pull/1987) Better documentation build workflow from 2021 GA Hackathon (1987) (@epassaro) - [1989](https://github.com/tardis-sn/tardis/pull/1989) Pre-release workflow (1989) (@epassaro) - [1988](https://github.com/tardis-sn/tardis/pull/1988) Use Azure mirror for reference data in testing pipeline (1988) (@epassaro) - [1978](https://github.com/tardis-sn/tardis/pull/1978) Plasma number densities using isotopes (1978) (@andrewfullard) - [1985](https://github.com/tardis-sn/tardis/pull/1985) Migrate testing pipeline to GitHub Actions (1985) (@epassaro) - [1981](https://github.com/tardis-sn/tardis/pull/1981) Better docstring coverage workflow from 2021 GA Hackathon (1981) (@epassaro) - [1980](https://github.com/tardis-sn/tardis/pull/1980) Check Black format on `master` branch (1980) (@epassaro) - [1982](https://github.com/tardis-sn/tardis/pull/1982) Add bot comment with directions to update .mailmap (1982) (@epassaro) - [1973](https://github.com/tardis-sn/tardis/pull/1973) Use spec file on Zenodo pipeline (1973) (@epassaro) - [1983](https://github.com/tardis-sn/tardis/pull/1983) Remove files already superseded by templates (1983) (@epassaro) - [1977](https://github.com/tardis-sn/tardis/pull/1977) Ignore more Black commits (1977) (@epassaro) - [1971](https://github.com/tardis-sn/tardis/pull/1971) Blackify TARDIS again (1971) (@epassaro) - [1974](https://github.com/tardis-sn/tardis/pull/1974) Add disclaimer to environment file regarding conda-forge recipe (1974) (@epassaro) - [1970](https://github.com/tardis-sn/tardis/pull/1970) Remove pull request bot comment workflow (1970) (@epassaro) - [1969](https://github.com/tardis-sn/tardis/pull/1969) Fix docs build after upgrading conda environment (1969) (@wkerzendorf) ### release-2022.4.24 (2022/04/21 20:19) - [1933](https://github.com/tardis-sn/tardis/pull/1933) Intensity p rays (1933) (@Rodot-) - [1948](https://github.com/tardis-sn/tardis/pull/1948) Update TARDIS environment after replacing PyNE (1948) (@epassaro) - [1957](https://github.com/tardis-sn/tardis/pull/1957) Removing Levels Index Variable Within Atomic Data Preperation (1957) (@bartnikm) - [1968](https://github.com/tardis-sn/tardis/pull/1968) fixed index typo in Saha solver documentation (1968) (@afloers) - [1959](https://github.com/tardis-sn/tardis/pull/1959) Disable `mamba` on Azure Pipelines (1959) (@epassaro) - [1967](https://github.com/tardis-sn/tardis/pull/1967) Logging/csvy parsers errors (1967) (@wkerzendorf) - [1813](https://github.com/tardis-sn/tardis/pull/1813) Replacing PyNE with radioactivedecay for radionuclide decay calculations (1813) (@lemointm) ### release-2022.4.1 (2022/04/07 10:38) - [1925](https://github.com/tardis-sn/tardis/pull/1925) Plasma Graph Tutorial (1925) (@bartnikm) ### release-2022.4.3 (2022/03/28 10:30) - [1899](https://github.com/tardis-sn/tardis/pull/1899) Filtering Levels Parameter within Plasma Calculations (1899) (@bartnikm) - [1920](https://github.com/tardis-sn/tardis/pull/1920) Estimators and Convergence Documentation (1920) (@isaacgsmith) - [1938](https://github.com/tardis-sn/tardis/pull/1938) Pin Jinja version (1938) (@isaacgsmith) ### release-2022.3.27 (2022/03/23 11:51) - [1928](https://github.com/tardis-sn/tardis/pull/1928) Fixing various physics documentation issues (1928) (@isaacgsmith) ### release-2022.3.2 (2022/03/14 11:16) - [1898](https://github.com/tardis-sn/tardis/pull/1898) Making changes to estimators (1898) (@isaacgsmith) ### release-2022.3.13 (2022/03/10 10:35) - [1922](https://github.com/tardis-sn/tardis/pull/1922) Fixing documentation links and misc. API documentation fixes (1922) (@isaacgsmith) ### release-2022.3.6 (2022/03/03 14:21) - [1919](https://github.com/tardis-sn/tardis/pull/1919) GPU Options (1919) (@KevinCawley) - [1918](https://github.com/tardis-sn/tardis/pull/1918) Fix documentation build failure due to PR #1823 (1918) (@atharva-2001) - [1917](https://github.com/tardis-sn/tardis/pull/1917) Continuum Opacities (1917) (@Rodot-) - [1823](https://github.com/tardis-sn/tardis/pull/1823) Disable Convergence Plots by default (1823) (@atharva-2001) - [1914](https://github.com/tardis-sn/tardis/pull/1914) add continuum tracer (1914) (@wkerzendorf) ### release-2022.2.27 (2022/02/24 16:00) - [1886](https://github.com/tardis-sn/tardis/pull/1886) Continuum branch [attempted merge with master] (1886) (@wkerzendorf) - [1907](https://github.com/tardis-sn/tardis/pull/1907) Add note on GPU selection to formal integral (1907) (@KevinCawley) - [1710](https://github.com/tardis-sn/tardis/pull/1710) Changed Formatting for the logger based on Log Level (1710) (@DhruvSondhi) - [1901](https://github.com/tardis-sn/tardis/pull/1901) Fix PyTest fixtures and updated mainloop to properly compile (1901) (@Rodot-) - [1900](https://github.com/tardis-sn/tardis/pull/1900) Make update-refdata pipeline open a PR instead of merging changes (1900) (@epassaro) ### release-2022.2.2 (2022/02/17 15:14) - [1837](https://github.com/tardis-sn/tardis/pull/1837) CUDA Version of the Formal Integral (1837) (@KevinCawley) - [1891](https://github.com/tardis-sn/tardis/pull/1891) Fixing Broken Latex Code (1891) (@bartnikm) - [1868](https://github.com/tardis-sn/tardis/pull/1868) Fixing Plasma Graph to Allow .dot and .tex file Generation (1868) (@bartnikm) - [1893](https://github.com/tardis-sn/tardis/pull/1893) Fixing small docs issues (1893) (@isaacgsmith) ### release-2022.2.6 (2022/02/02 12:16) - [1888](https://github.com/tardis-sn/tardis/pull/1888) Pin Black (1888) (@atharva-2001) - [1881](https://github.com/tardis-sn/tardis/pull/1881) Changed to append `seed` & `index` values only once for a particular `RPacketTracker` instance (1881) (@DhruvSondhi) ### release-2022.1.3 (2022/01/29 08:59) - [1877](https://github.com/tardis-sn/tardis/pull/1877) printing packet information (1877) (@wkerzendorf) - [1867](https://github.com/tardis-sn/tardis/pull/1867) Arepo parser (1867) (@AlexHls) - [1843](https://github.com/tardis-sn/tardis/pull/1843) Changed Default Log Level to `INFO` for the Simulation Logging (1843) (@DhruvSondhi) - [1849](https://github.com/tardis-sn/tardis/pull/1849) Interactive docs for models (1849) (@isaacgsmith) - [1876](https://github.com/tardis-sn/tardis/pull/1876) fixed outdated pytest tardis command in documentation (1876) (@afloers) - [1874](https://github.com/tardis-sn/tardis/pull/1874) move transport related parts to r_packet_transport (1874) (@wkerzendorf) - [1872](https://github.com/tardis-sn/tardis/pull/1872) Fix links in the code of conduct (1872) (@isaacgsmith) - [1847](https://github.com/tardis-sn/tardis/pull/1847) Add a ModelState class (1847) (@atharva-2001) ### release-2022.1.23 (2022/01/21 11:50) - [1865](https://github.com/tardis-sn/tardis/pull/1865) Fixing links on contributing page (1865) (@isaacgsmith) - [1866](https://github.com/tardis-sn/tardis/pull/1866) Refactor `test_configuration_namespace.py` (1866) (@atharva-2001) - [1861](https://github.com/tardis-sn/tardis/pull/1861) Renamed `RPacketCollection` Class to `RPacketTracker` (1861) (@DhruvSondhi) ### release-2022.1.16 (2022/01/12 10:11) - [1827](https://github.com/tardis-sn/tardis/pull/1827) Adding Explanations to Spectrum Configuration (1827) (@bartnikm) - [1752](https://github.com/tardis-sn/tardis/pull/1752) Add tests to SDEC plotter module (1752) (@jaladh-singhal) - [1848](https://github.com/tardis-sn/tardis/pull/1848) Switching progress bars page to rst (1848) (@isaacgsmith) ### release-2022.1.9 (2022/01/06 10:59) - [1846](https://github.com/tardis-sn/tardis/pull/1846) Fix Virtual Packet Logging Bug (1846) (@atharva-2001) ### release-2021.12.19 (2021/12/13 13:38) - [1834](https://github.com/tardis-sn/tardis/pull/1834) Adding Luminosity Integral Explanation to Supernova Configuration (1834) (@bartnikm) - [1842](https://github.com/tardis-sn/tardis/pull/1842) Fixed fstring issue from mixing quotes and reformatted files from fstring PR with black (1842) (@Rodot-) - [1841](https://github.com/tardis-sn/tardis/pull/1841) Fixed the Failing Documentation for Tracking `RPacket` Feature (1841) (@DhruvSondhi) ### release-2021.12.12 (2021/12/10 12:30) - [1835](https://github.com/tardis-sn/tardis/pull/1835) Reorganizing docs for website release (1835) (@isaacgsmith) - [1748](https://github.com/tardis-sn/tardis/pull/1748) Tracking RPacket Properties in Montecarlo Single Packet Loop Function (1748) (@DhruvSondhi) - [1706](https://github.com/tardis-sn/tardis/pull/1706) Changed to fstring (1706) (@svenkat19) - [1833](https://github.com/tardis-sn/tardis/pull/1833) Editing instructions for contributing to the documentation (1833) (@isaacgsmith) ### release-2021.12.5 (2021/12/02 14:14) - [1832](https://github.com/tardis-sn/tardis/pull/1832) Convert quantities to arrays when plotting in SDEC plot (1832) (@atharva-2001) - [1830](https://github.com/tardis-sn/tardis/pull/1830) Name plotly traces in SDEC plot (1830) (@atharva-2001) ### release-2021.11.28 (2021/11/25 12:29) - [1825](https://github.com/tardis-sn/tardis/pull/1825) changed all files to import constants from only tardis (1825) (@shilpiprd) ### release-2021.11.21 (2021/11/14 18:43) ### release-2021.11.14 (2021/11/12 09:24) - [1799](https://github.com/tardis-sn/tardis/pull/1799) Bug fixes and Improvements in Custom Abundance Widget (1799) (@yuyizheng1112) - [1803](https://github.com/tardis-sn/tardis/pull/1803) Option to make docs build in parallel (1803) (@isaacgsmith) - [1817](https://github.com/tardis-sn/tardis/pull/1817) Fixing SDEC docs page (1817) (@isaacgsmith) ### release-2021.11.7 (2021/10/31 19:43) ### release-2021.10.31 (2021/10/27 15:00) - [1821](https://github.com/tardis-sn/tardis/pull/1821) remove numexpr (1821) (@wkerzendorf) - [1788](https://github.com/tardis-sn/tardis/pull/1788) Add cmap option to specify the colormap of plot (1788) (@yuyizheng1112) - [1801](https://github.com/tardis-sn/tardis/pull/1801) Cleaning up docs build (1801) (@isaacgsmith) - [1808](https://github.com/tardis-sn/tardis/pull/1808) Fixing import for binder (1808) (@isaacgsmith) - [1816](https://github.com/tardis-sn/tardis/pull/1816) fix push job on update changelog workflow (1816) (@epassaro) ### release-2021.10.17 (2021/10/14 11:37) - [1811](https://github.com/tardis-sn/tardis/pull/1811) Fixing broken documentation (1811) (@isaacgsmith) - [1744](https://github.com/tardis-sn/tardis/pull/1744) Basic Spectrum Generation Interactive Documentation (1744) (@isaacgsmith) - [1810](https://github.com/tardis-sn/tardis/pull/1810) Add option to add Observed Spectrum (2) (1810) (@atharva-2001) ### release-2021.10.1 (2021/10/06 09:38) - [1806](https://github.com/tardis-sn/tardis/pull/1806) Pin `jsonschema` to v3 (1806) (@atharva-2001) - [1805](https://github.com/tardis-sn/tardis/pull/1805) Revert "Add option to add Observed Spectrum" (1805) (@) - [1761](https://github.com/tardis-sn/tardis/pull/1761) Add option to add Observed Spectrum (1761) (@atharva-2001) - [1794](https://github.com/tardis-sn/tardis/pull/1794) Change virtual spectrum spawn range start value to 1 (1794) (@atharva-2001) ### release-2021.9.26 (2021/09/24 17:20) - [1757](https://github.com/tardis-sn/tardis/pull/1757) Auto-Generating Tutorials Page (1757) (@isaacgsmith) ### release-2021.9.19 (2021/09/17 10:41) - [1784](https://github.com/tardis-sn/tardis/pull/1784) Restructure Custom Abundance Widget code (1784) (@yuyizheng1112) - [1763](https://github.com/tardis-sn/tardis/pull/1763) Making Changes to Several Tutorials (1763) (@isaacgsmith) ### release-2021.9.12 (2021/09/09 07:18) - [1790](https://github.com/tardis-sn/tardis/pull/1790) disable changelog in release pipeline (1790) (@epassaro) - [1769](https://github.com/tardis-sn/tardis/pull/1769) Changed the way `specific_log_level` flag works in the Logging Configuration (1769) (@DhruvSondhi) ### release-2021.8.29 (2021/08/26 13:02) ### release-2021.8.26 (2021/08/26 12:40) - [1789](https://github.com/tardis-sn/tardis/pull/1789) fix zenodo pipeline (2nd) (1789) (@epassaro) - [1787](https://github.com/tardis-sn/tardis/pull/1787) fix zenodo pipeline env (1787) (@epassaro) - [1786](https://github.com/tardis-sn/tardis/pull/1786) fix for release task (1786) (@epassaro) - [1703](https://github.com/tardis-sn/tardis/pull/1703) Adding Progress Bars (1703) (@atharva-2001) - [1775](https://github.com/tardis-sn/tardis/pull/1775) orchestrating continuous delivery pipeline (1775) (@epassaro) - [1751](https://github.com/tardis-sn/tardis/pull/1751) Integrate custom abundance widget as a full module (1751) (@yuyizheng1112) - [1778](https://github.com/tardis-sn/tardis/pull/1778) Fix Hover Data in Plasma Convergence Plots (1778) (@atharva-2001) - [1693](https://github.com/tardis-sn/tardis/pull/1693) Enabling virtual_packet_logging by default in the visualization folder (1693) (@atharva-2001) ### release-2021.8.15.0 (2021/08/12 10:24) - [1770](https://github.com/tardis-sn/tardis/pull/1770) Rename cplots to convergence_plots (1770) (@atharva-2001) - [1772](https://github.com/tardis-sn/tardis/pull/1772) Reverse legend in Plasma Convergence Plots (1772) (@atharva-2001) ### release-2021.8.8.0 (2021/08/05 14:49) - [1768](https://github.com/tardis-sn/tardis/pull/1768) Renamed `specific` log flag to `specific_log_level` (1768) (@DhruvSondhi) - [1721](https://github.com/tardis-sn/tardis/pull/1721) Restructure Model Configuration Documentation (1721) (@isaacgsmith) ### release-2021.8.1.0 (2021/07/29 14:57) - [1753](https://github.com/tardis-sn/tardis/pull/1753) Adding Convergence Plots to the Documentation (1753) (@atharva-2001) - [1738](https://github.com/tardis-sn/tardis/pull/1738) TARDIS Grid (1738) (@marxwillia) - [1755](https://github.com/tardis-sn/tardis/pull/1755) Changing Note Format in Visualization Notebooks (1755) (@isaacgsmith) - [1740](https://github.com/tardis-sn/tardis/pull/1740) Renamed `montecarlo_logger.py` to `montecarlo_tracking.py` (1740) (@DhruvSondhi) ### release-2021.7.25.0 (2021/07/23 12:16) - [1697](https://github.com/tardis-sn/tardis/pull/1697) Interact Button in Documentation (1697) (@isaacgsmith) - [1636](https://github.com/tardis-sn/tardis/pull/1636) Adding Convergence Plots (1636) (@atharva-2001) - [1723](https://github.com/tardis-sn/tardis/pull/1723) Edit docstring in `run_tardis` (1723) (@atharva-2001) - [1743](https://github.com/tardis-sn/tardis/pull/1743) Fix for Unresponsive Main Page due to Twitter Widget (1743) (@atharva-2001) - [1746](https://github.com/tardis-sn/tardis/pull/1746) Fixing Docs Build (1746) (@isaacgsmith) - [1730](https://github.com/tardis-sn/tardis/pull/1730) Renamed `log_state` to `log_level` for setting the logging level in the Logger (1730) (@DhruvSondhi) - [1736](https://github.com/tardis-sn/tardis/pull/1736) Fixing Doc Build Warnings (1736) (@isaacgsmith) - [1737](https://github.com/tardis-sn/tardis/pull/1737) Add Jaladh to mailmap (1737) (@jaladh-singhal) - [1739](https://github.com/tardis-sn/tardis/pull/1739) Fixed IPython Displaying the Plasma Stratification (Table) even when the Logger is turned Off (1739) (@DhruvSondhi) - [1742](https://github.com/tardis-sn/tardis/pull/1742) Reduce `damping_constant` under `t_inner` property in tardis_example.yml (1742) (@atharva-2001) ### release-2021.7.18.0 (2021/07/16 10:41) - [1665](https://github.com/tardis-sn/tardis/pull/1665) Demonstrating the `nelements` and the `species_list` functionality in the SDEC plot notebook (1665) (@marxwillia) - [1727](https://github.com/tardis-sn/tardis/pull/1727) Fixing Quickstart Metadata (1727) (@isaacgsmith) - [1726](https://github.com/tardis-sn/tardis/pull/1726) display "latest" in doc version (1726) (@epassaro) - [1716](https://github.com/tardis-sn/tardis/pull/1716) Small fixes to docs (1716) (@isaacgsmith) - [1722](https://github.com/tardis-sn/tardis/pull/1722) Adding missing import for `IonNumberDensityHeNLTE` in `standard_plasmas.py` (1722) (@DhruvSondhi) - [1714](https://github.com/tardis-sn/tardis/pull/1714) Removed Formatting from Existing Log Messages (1714) (@DhruvSondhi) ### release-2021.7.14.0 (2021/07/14 11:39) - [1707](https://github.com/tardis-sn/tardis/pull/1707) Open in VSCode badge (1707) (@wkerzendorf) - [1713](https://github.com/tardis-sn/tardis/pull/1713) fix package data for conda-forge package (1713) (@epassaro) - [1711](https://github.com/tardis-sn/tardis/pull/1711) Changed the xlim and the ylabel (From PR #1646) (1711) (@Rodot-) ### release-2021.7.12.0 (2021/07/12 16:05) - [1686](https://github.com/tardis-sn/tardis/pull/1686) fix pip install (1686) (@epassaro) - [1701](https://github.com/tardis-sn/tardis/pull/1701) Adding Logging Support for Caught Exceptions (1701) (@DhruvSondhi) - [1684](https://github.com/tardis-sn/tardis/pull/1684) Moved Simulation & Montecarlo Logging Frameworks to `tardis/io/logger` folder (1684) (@DhruvSondhi) - [1691](https://github.com/tardis-sn/tardis/pull/1691) Create profiling directory (1691) (@KevinCawley) ### release-2021.7.11.0 (2021/07/09 13:07) - [1680](https://github.com/tardis-sn/tardis/pull/1680) add docstr-coverage badge (1680) (@epassaro) - [1696](https://github.com/tardis-sn/tardis/pull/1696) Adding mu and r to virtual packet logging (1696) (@isaacgsmith) - [1695](https://github.com/tardis-sn/tardis/pull/1695) Enabling spectrum plotting in the frequency domain (1695) (@isaacgsmith) ### release-2021.7.5 (2021/07/05 10:32) - [1688](https://github.com/tardis-sn/tardis/pull/1688) final changes for release pipeline (1688) (@epassaro) - [1683](https://github.com/tardis-sn/tardis/pull/1683) prepare release pipeline for CalVer (1683) (@epassaro) ### release-2021.07.01 (2021/07/01 19:05) - [1674](https://github.com/tardis-sn/tardis/pull/1674) APE 17 migration (1674) (@epassaro) - [1658](https://github.com/tardis-sn/tardis/pull/1658) add refdata repo selection in template (1658) (@epassaro) - [1677](https://github.com/tardis-sn/tardis/pull/1677) Revert "Port tardis_opacities script from tardisanalysis" (1677) (@andrewfullard) - [1660](https://github.com/tardis-sn/tardis/pull/1660) Small fixes to I/O documentation (1660) (@isaacgsmith) - [1681](https://github.com/tardis-sn/tardis/pull/1681) add latest black commit to .git-blame-ignore-revs (1681) (@epassaro) - [1678](https://github.com/tardis-sn/tardis/pull/1678) Enabling Repository on Binder (1678) (@isaacgsmith) - [1679](https://github.com/tardis-sn/tardis/pull/1679) Formatted files with Black (1679) (@DhruvSondhi) - [1633](https://github.com/tardis-sn/tardis/pull/1633) Implementing Logging Configuration for Notebook Logging (1633) (@DhruvSondhi) - [1642](https://github.com/tardis-sn/tardis/pull/1642) Adding Glossary (1642) (@J-Je0ng) - [1580](https://github.com/tardis-sn/tardis/pull/1580) Port tardis_opacities script from tardisanalysis (1580) (@MarkMageeAstro) ### v3.0.dev4019 (2021/06/25 12:09) - [1664](https://github.com/tardis-sn/tardis/pull/1664) use conda-forge packages instead of pypi (1664) (@epassaro) - [1667](https://github.com/tardis-sn/tardis/pull/1667) Moving Profiling Page (1667) (@isaacgsmith) - [1659](https://github.com/tardis-sn/tardis/pull/1659) Restructure Documentation pt. 2 (1659) (@isaacgsmith) - [1656](https://github.com/tardis-sn/tardis/pull/1656) Editing sponsors and credits pages of documentation (1656) (@isaacgsmith) - [1597](https://github.com/tardis-sn/tardis/pull/1597) add value error to ensure active virtual packet logging in SDECPlotter (1597) (@yuyizheng1112) - [1630](https://github.com/tardis-sn/tardis/pull/1630) Fix FileExistsError in to_hdf() (1630) (@yuyizheng1112) - [1641](https://github.com/tardis-sn/tardis/pull/1641) Editing Installation Page (1641) (@musabbihaz) - [1657](https://github.com/tardis-sn/tardis/pull/1657) Add SnakeViz profiling example (1657) (@KevinCawley) ### v3.0.dev4010 (2021/06/18 17:22) - [1644](https://github.com/tardis-sn/tardis/pull/1644) add mailmap check workflow (1644) (@epassaro) - [1589](https://github.com/tardis-sn/tardis/pull/1589) Adding Interactive Initialization Documentation (1589) (@isaacgsmith) - [1627](https://github.com/tardis-sn/tardis/pull/1627) Correct misspelling in sdec_plot (1627) (@yuyizheng1112) - [1632](https://github.com/tardis-sn/tardis/pull/1632) Formatting Logging Output for Simulation (1632) (@DhruvSondhi) - [1652](https://github.com/tardis-sn/tardis/pull/1652) changes to environment (1652) (@epassaro) - [1650](https://github.com/tardis-sn/tardis/pull/1650) Adding functionality to Detect Running Environments for TARDIS Simulations (1650) (@DhruvSondhi) - [1615](https://github.com/tardis-sn/tardis/pull/1615) add flag to disable nbsphinx (1615) (@epassaro) - [1651](https://github.com/tardis-sn/tardis/pull/1651) force orphan gh-pages branch (1651) (@epassaro) - [1643](https://github.com/tardis-sn/tardis/pull/1643) Restructure Documentation (1643) (@isaacgsmith) - [1647](https://github.com/tardis-sn/tardis/pull/1647) Fix for the v-packet logging while parallelism is enabled. (1647) (@Rodot-) - [1645](https://github.com/tardis-sn/tardis/pull/1645) configure codecov (1645) (@epassaro) - [1586](https://github.com/tardis-sn/tardis/pull/1586) add gh pages instruction (1586) (@epassaro) ### v3.0.dev3998 (2021/06/14 10:52) - [1648](https://github.com/tardis-sn/tardis/pull/1648) fix compareWith parameter in release pipeline (1648) (@epassaro) - [1609](https://github.com/tardis-sn/tardis/pull/1609) update refdata procedure docs (1609) (@epassaro) - [1635](https://github.com/tardis-sn/tardis/pull/1635) test before make a new release (1635) (@epassaro) - [1617](https://github.com/tardis-sn/tardis/pull/1617) Fixing `docstrings` & indentation related warnings for Sphinx (1617) (@DhruvSondhi) - [1565](https://github.com/tardis-sn/tardis/pull/1565) Fix for close line test. (1565) (@Rodot-) - [1639](https://github.com/tardis-sn/tardis/pull/1639) push montecarlo data to refdata repo (1639) (@epassaro) - [1595](https://github.com/tardis-sn/tardis/pull/1595) move zenodo pipeline to GA (1595) (@epassaro) - [1623](https://github.com/tardis-sn/tardis/pull/1623) force pyne nomoab_openmc version (1623) (@epassaro) - [1622](https://github.com/tardis-sn/tardis/pull/1622) Adding GitHub to sponsors page (1622) (@isaacgsmith) - [1631](https://github.com/tardis-sn/tardis/pull/1631) update mailmap and orcid (1631) (@epassaro) - [1619](https://github.com/tardis-sn/tardis/pull/1619) disable repeat on pr comment (1619) (@epassaro) ### v3.0.dev3983 (2021/06/04 12:50) - [1555](https://github.com/tardis-sn/tardis/pull/1555) Replacing the contents of the news section with TARDIS twitter feed (1555) (@atharva-2001) - [1610](https://github.com/tardis-sn/tardis/pull/1610) add token at checkout step (1610) (@epassaro) - [1594](https://github.com/tardis-sn/tardis/pull/1594) Fixing JSON Schema not Rendering Properly in the Documentation (1594) (@DhruvSondhi) - [1607](https://github.com/tardis-sn/tardis/pull/1607) SDEC Visibility Fix (1607) (@atharva-2001) - [1603](https://github.com/tardis-sn/tardis/pull/1603) Bot mail change (1603) (@epassaro) - [1601](https://github.com/tardis-sn/tardis/pull/1601) Fixing documentation build (1601) (@isaacgsmith) - [1602](https://github.com/tardis-sn/tardis/pull/1602) add fetch depth param to changelog workflow (1602) (@epassaro) - [1588](https://github.com/tardis-sn/tardis/pull/1588) Added PR review checklist workflow (1588) (@aribalam) - [1592](https://github.com/tardis-sn/tardis/pull/1592) Flexible packet initial radius (1592) (@andrewfullard) - [1598](https://github.com/tardis-sn/tardis/pull/1598) Resolving warnings in ADS notebook (1598) (@isaacgsmith) - [1596](https://github.com/tardis-sn/tardis/pull/1596) Fixing bibliography in documentation build (1596) (@isaacgsmith) - [1590](https://github.com/tardis-sn/tardis/pull/1590) Fixing inconsistencies for `rst` formatting in Docs (Second Iteration) (1590) (@DhruvSondhi) ### v3.0.dev3970 (2021/05/28 17:43) - [1570](https://github.com/tardis-sn/tardis/pull/1570) add fetch depth param to Azure template (1570) (@epassaro) - [1567](https://github.com/tardis-sn/tardis/pull/1567) review environment file (1567) (@epassaro) - [1584](https://github.com/tardis-sn/tardis/pull/1584) Making sponsors page of documentation (1584) (@isaacgsmith) - [1577](https://github.com/tardis-sn/tardis/pull/1577) Fixing issues with `Citations` & `Label` references in Docs (1577) (@marxwillia) - [1581](https://github.com/tardis-sn/tardis/pull/1581) changes to badges (1581) (@marxwillia) ### v3.0.dev3959 (2021/05/21 14:44) - [1582](https://github.com/tardis-sn/tardis/pull/1582) Fixing `Team` Link redirection in Code Of Conduct (1582) (@marxwillia) ### v3.0.dev3957 (2021/05/20 15:27) - [1571](https://github.com/tardis-sn/tardis/pull/1571) Fix numba deprecation (1571) (@KevinCawley) - [1578](https://github.com/tardis-sn/tardis/pull/1578) minor changes to compare refdata pipeline (1578) (@epassaro) - [1557](https://github.com/tardis-sn/tardis/pull/1557) Changed Quickstart Example according to #1477 (1557) (@aribalam) - [1575](https://github.com/tardis-sn/tardis/pull/1575) Fixing virtual_packet_logging instructions for line info widget (1575) (@DhruvSondhi) - [1574](https://github.com/tardis-sn/tardis/pull/1574) Revert "Adding Instructions For Enabling `virtual_packet_logging` Properties in Config" (1574) (@jaladh-singhal) ### v3.0.dev3952 (2021/05/14 13:44) - [1559](https://github.com/tardis-sn/tardis/pull/1559) Added support for passing Configuration object in run_tardis (1559) (@aribalam) - [1553](https://github.com/tardis-sn/tardis/pull/1553) Fixing RST Formatting for `config_validator.rst` (1553) (@DhruvSondhi) - [1551](https://github.com/tardis-sn/tardis/pull/1551) Adding Instructions For Enabling `virtual_packet_logging` Properties in Config (1551) (@DhruvSondhi) - [1528](https://github.com/tardis-sn/tardis/pull/1528) Revising "Packet Propagation" page of physics docs (1528) (@isaacgsmith) - [1569](https://github.com/tardis-sn/tardis/pull/1569) Fixing docs build problem (1569) (@isaacgsmith) ### v3.0.dev3947 (2021/05/12 16:42) - [1566](https://github.com/tardis-sn/tardis/pull/1566) better handling of pickle5 backport (1566) (@epassaro) - [1562](https://github.com/tardis-sn/tardis/pull/1562) added symlinks for tardis_example.yml (1562) (@parikshit14) ### v3.0.dev3945 (2021/05/05 10:03) - [1434](https://github.com/tardis-sn/tardis/pull/1434) create update refdata pipeline (1434) (@epassaro) - [1554](https://github.com/tardis-sn/tardis/pull/1554) Adding Config Value Validation for Different Parameters via Config File (1554) (@DhruvSondhi) - [1549](https://github.com/tardis-sn/tardis/pull/1549) Numba formal integral (1549) (@Rodot-) - [1546](https://github.com/tardis-sn/tardis/pull/1546) Fixing Bad YAML output in the documentation (1546) (@atharva-2001) - [1543](https://github.com/tardis-sn/tardis/pull/1543) Restructuring r_packet.py (1543) (@andrewfullard) - [1539](https://github.com/tardis-sn/tardis/pull/1539) Add ion contributions to SDEC plotter (1539) (@MarkMageeAstro) - [1531](https://github.com/tardis-sn/tardis/pull/1531) Fixing SDEC labels bug in the documentation (1531) (@atharva-2001) - [1450](https://github.com/tardis-sn/tardis/pull/1450) string formatting done (try fixing all syntax errors) (1450) (@yashagg2001) - [1493](https://github.com/tardis-sn/tardis/pull/1493) Added workflow for Documentation preview generation (1493) (@aribalam) - [1540](https://github.com/tardis-sn/tardis/pull/1540) Fix version number in docs (1540) (@epassaro) - [1538](https://github.com/tardis-sn/tardis/pull/1538) clean template files (1538) (@epassaro) - [1512](https://github.com/tardis-sn/tardis/pull/1512) Improved default number of interpolate_shells for the formal integral (1512) (@chvogl) - [1499](https://github.com/tardis-sn/tardis/pull/1499) [WIP] Enable full tests for Formal Integral (1499) (@aribalam) - [1530](https://github.com/tardis-sn/tardis/pull/1530) Small fixes in git_workflow guide (1530) (@Molkree) - [1535](https://github.com/tardis-sn/tardis/pull/1535) Fix macOS tests (pickle protocol 5) (1535) (@epassaro) - [1478](https://github.com/tardis-sn/tardis/pull/1478) add the symlink to visualization examples (1478) (@yuyizheng1112) - [1527](https://github.com/tardis-sn/tardis/pull/1527) Fixing the documentation bug (1527) (@atharva-2001) - [1526](https://github.com/tardis-sn/tardis/pull/1526) enable manual trigger for docs (1526) (@epassaro) - [1517](https://github.com/tardis-sn/tardis/pull/1517) Add catch for missing elements in SDEC plot (1517) (@MarkMageeAstro) - [1483](https://github.com/tardis-sn/tardis/pull/1483) Corrected csvy model files (1483) (@antreev-brar) - [1479](https://github.com/tardis-sn/tardis/pull/1479) getting rid of lexsort warning (1479) (@atharva-2001) - [1506](https://github.com/tardis-sn/tardis/pull/1506) Add ability to plot only top contributing elements to SDEC plot (1506) (@MarkMageeAstro) - [1509](https://github.com/tardis-sn/tardis/pull/1509) Collisional ionization (1509) (@chvogl) - [1477](https://github.com/tardis-sn/tardis/pull/1477) Added option for keyword arguments in the TardisSpectrum's plot method (1477) (@aribalam) - [1474](https://github.com/tardis-sn/tardis/pull/1474) Docs Update (1474) (@ankur-soni97) - [1498](https://github.com/tardis-sn/tardis/pull/1498) Feature request: add virtual-packet-logging option to run_tardis() (1498) (@yuyizheng1112) - [1502](https://github.com/tardis-sn/tardis/pull/1502) Correct .coveragerc file (1502) (@yuyizheng1112) - [1492](https://github.com/tardis-sn/tardis/pull/1492) Fix docstring mistakes in #1145 (1492) (@chvogl) - [1505](https://github.com/tardis-sn/tardis/pull/1505) Fixing Visualization Notebook Hyperlink (1505) (@KevinCawley) - [1481](https://github.com/tardis-sn/tardis/pull/1481) Added Documentation for Parallel execution with Numba and OpenMP (1481) (@aribalam) - [1145](https://github.com/tardis-sn/tardis/pull/1145) Add photoionization-related rates (1145) (@chvogl) - [1470](https://github.com/tardis-sn/tardis/pull/1470) Incorporating old physics section of the documentation (1470) (@isaacgsmith) - [1459](https://github.com/tardis-sn/tardis/pull/1459) Removed the deprecated --with-vpacket-logging flag (1459) (@antreev-brar) - [1462](https://github.com/tardis-sn/tardis/pull/1462) Renamed widgets subpackage to visualization and restructured modules within it (1462) (@jaladh-singhal) - [1464](https://github.com/tardis-sn/tardis/pull/1464) Fixed the array types when interpolate_shells > 0. Now returns the p… (1464) (@Rodot-) - [1454](https://github.com/tardis-sn/tardis/pull/1454) Reorganizing Models (1454) (@isaacgsmith) - [1458](https://github.com/tardis-sn/tardis/pull/1458) Added option to create redirects in docs configuration and redirected gui to visualization (1458) (@jaladh-singhal) - [1457](https://github.com/tardis-sn/tardis/pull/1457) Reproduced SDEC plots in demo notebook (1457) (@marxwillia) - [1446](https://github.com/tardis-sn/tardis/pull/1446) Fixed italicised Units in sdec_plot (1446) (@DhruvSondhi) - [1438](https://github.com/tardis-sn/tardis/pull/1438) Add documentation for Spectral Element Decomposition Plot (1438) (@jaladh-singhal) - [1455](https://github.com/tardis-sn/tardis/pull/1455) Clean up numba parallelization warnings #1416 (1455) (@antreev-brar) - [1442](https://github.com/tardis-sn/tardis/pull/1442) Fixed distance parameter not producing accurate SDEC plots (1442) (@jaladh-singhal) - [1432](https://github.com/tardis-sn/tardis/pull/1432) fix update changelog workflow (1432) (@epassaro) - [1441](https://github.com/tardis-sn/tardis/pull/1441) Rename SEDec to SDEC in Spectral element DEComposition plot (1441) (@jaladh-singhal) - [1430](https://github.com/tardis-sn/tardis/pull/1430) compare refdata with arbitrary labels (1430) (@epassaro) - [1431](https://github.com/tardis-sn/tardis/pull/1431) Documentation guidelines hotfix (1431) (@KevinCawley) - [1424](https://github.com/tardis-sn/tardis/pull/1424) Rename Kromer Plot to Spectral Element Decomposition (SEDec) Plot (1424) (@jaladh-singhal) - [1409](https://github.com/tardis-sn/tardis/pull/1409) add docstr-coverage workflow (1409) (@epassaro) - [1405](https://github.com/tardis-sn/tardis/pull/1405) Restructured development workflow and added code quality & documentation guidelines in it (1405) (@andrewfullard) - [1421](https://github.com/tardis-sn/tardis/pull/1421) Old physics reorganization (1421) (@andrewfullard) - [1423](https://github.com/tardis-sn/tardis/pull/1423) fixes for ci docs (1423) (@andrewfullard) - [1420](https://github.com/tardis-sn/tardis/pull/1420) Conversion of enlisted variable to int64 datatype (1420) (@andrewfullard) - [1403](https://github.com/tardis-sn/tardis/pull/1403) Fixing Hyperlinks in Documentation (1403) (@andrewfullard) - [1410](https://github.com/tardis-sn/tardis/pull/1410) Post reference data results (1410) (@andrewfullard) - [1415](https://github.com/tardis-sn/tardis/pull/1415) Add .log to gitignore, disabled montecarlo log (1415) (@andrewfullard) ### v3.0.dev3808 (2021/01/21 11:22) - [1414](https://github.com/tardis-sn/tardis/pull/1414) blackify tests (1414) (@andrewfullard) - [1413](https://github.com/tardis-sn/tardis/pull/1413) Corrected the Hyperlink reference (1413) (@andrewfullard) - [1398](https://github.com/tardis-sn/tardis/pull/1398) add black check workflow (1398) (@andrewfullard) ### v3.0.dev3801 (2021/01/08 16:28) - [1399](https://github.com/tardis-sn/tardis/pull/1399) fix tests with --generate-reference flag (1399) (@andrewfullard) - [1393](https://github.com/tardis-sn/tardis/pull/1393) Update environment file (1393) (@epassaro) - [1404](https://github.com/tardis-sn/tardis/pull/1404) added functionality for automatic date updation in docs (1404) (@andrewfullard) ### v3.0.dev3796 (2020/12/28 12:12) - [1402](https://github.com/tardis-sn/tardis/pull/1402) explicitly add parso to dependencies (1402) (@andrewfullard) ### v3.0.dev3794 (2020/12/21 10:22) - [1241](https://github.com/tardis-sn/tardis/pull/1241) Add modified Kromer plot to work with widgets (1241) (@marxwillia) ### v3.0.dev3769 (2020/12/18 16:07) - [1395](https://github.com/tardis-sn/tardis/pull/1395) Update Matterbridge docs (1395) (@epassaro) - [1369](https://github.com/tardis-sn/tardis/pull/1369) Fix incorrect docstrings (1369) (@KevinCawley) - [1383](https://github.com/tardis-sn/tardis/pull/1383) add preview docs section (1383) (@epassaro) - [1392](https://github.com/tardis-sn/tardis/pull/1392) Fix documentation build (1392) (@epassaro) - [1394](https://github.com/tardis-sn/tardis/pull/1394) Revert "Fixing docs building problem" (1394) (@andrewfullard) - [1387](https://github.com/tardis-sn/tardis/pull/1387) Fixing docs building problem (1387) (@isaacgsmith) - [1380](https://github.com/tardis-sn/tardis/pull/1380) Packet logging fixes for visualization (1380) (@andrewfullard) - [1384](https://github.com/tardis-sn/tardis/pull/1384) Small fixes for existing workflows (1384) (@epassaro) ### v3.0.dev3756 (2020/12/11 14:43) - [1382](https://github.com/tardis-sn/tardis/pull/1382) Fixing Quickstart Problem (1382) (@andrewfullard) - [1379](https://github.com/tardis-sn/tardis/pull/1379) Reorganizing files in docs (2/2) (1379) (@andrewfullard) - [1378](https://github.com/tardis-sn/tardis/pull/1378) Adding Plasma File in TOC (1378) (@andrewfullard) - [1371](https://github.com/tardis-sn/tardis/pull/1371) Reorganizing files in docs (1/2) (1371) (@andrewfullard) - [1372](https://github.com/tardis-sn/tardis/pull/1372) Update CI doc section (1372) (@epassaro) - [1375](https://github.com/tardis-sn/tardis/pull/1375) Fixed real packet logging of properties (1375) (@andrewfullard) - [1354](https://github.com/tardis-sn/tardis/pull/1354) Virtual packet logging fix (1354) (@andrewfullard) - [1368](https://github.com/tardis-sn/tardis/pull/1368) Fix of Issue #1176 (1368) (@andrewfullard) - [1365](https://github.com/tardis-sn/tardis/pull/1365) Parallel numba setup (1365) (@andrewfullard) - [1331](https://github.com/tardis-sn/tardis/pull/1331) Update changelog workflow (1331) (@andrewfullard) ### v3.0.dev3698 (2020/12/04 14:50) - [1366](https://github.com/tardis-sn/tardis/pull/1366) Fix duplicate appending of scalars in HDF writer and add an overwrite option (1366) (@andrewfullard) - [1364](https://github.com/tardis-sn/tardis/pull/1364) Fixing issue #1357 (1364) (@andrewfullard) - [1359](https://github.com/tardis-sn/tardis/pull/1359) Fix of Issue #680 (1359) (@KevinCawley) - [1361](https://github.com/tardis-sn/tardis/pull/1361) Fixing issue #1177 (1361) (@isaacgsmith) ### v3.0.dev3680 (2020/11/25 13:38) - [1358](https://github.com/tardis-sn/tardis/pull/1358) Fix C formal integral (1358) (@andrewfullard) - [1352](https://github.com/tardis-sn/tardis/pull/1352) Add Arjun's emails to .mailmap (1352) (@andrewfullard) - [929](https://github.com/tardis-sn/tardis/pull/929) Numba montecarlo (929) (@wkerzendorf) ### v3.0.dev3673 (2020/11/18 11:26) - [1353](https://github.com/tardis-sn/tardis/pull/1353) fix doc workflow (1353) (@wkerzendorf) - [1349](https://github.com/tardis-sn/tardis/pull/1349) Adding documentation for research articles that used TARDIS (1349) (@andrewfullard) ### v3.0.dev3541 (2020/11/10 13:45) - [1340](https://github.com/tardis-sn/tardis/pull/1340) Moved staticmethods of line_info module to a dedicated plot_util module (1340) (@marxwillia) ### v3.0.dev3539 (2020/11/04 11:50) - [1333](https://github.com/tardis-sn/tardis/pull/1333) Rename testing pipeline (1333) (@epassaro) - [1300](https://github.com/tardis-sn/tardis/pull/1300) Remove pip install option from TARDIS installation docs (1300) (@jaladh-singhal) - [1330](https://github.com/tardis-sn/tardis/pull/1330) Small fix for release pipeline (1330) (@epassaro) - [1332](https://github.com/tardis-sn/tardis/pull/1332) Remove helper scripts (1332) (@epassaro) - [1335](https://github.com/tardis-sn/tardis/pull/1335) Updated gitignore to ignore auto-generated files (1335) (@jaladh-singhal) - [1326](https://github.com/tardis-sn/tardis/pull/1326) Add workflow for autodeploying documentation to github pages via an action (1326) (@morganlee123) - [1283](https://github.com/tardis-sn/tardis/pull/1283) Changed latex strings to raw strings (1283) (@Ak0303) - [1310](https://github.com/tardis-sn/tardis/pull/1310) Apply new template to refdata pipeline (1310) (@epassaro) - [1308](https://github.com/tardis-sn/tardis/pull/1308) Apply new template to release pipeline (1308) (@epassaro) ### v3.0.dev3527 (2020/10/05 12:43) - [1313](https://github.com/tardis-sn/tardis/pull/1313) Add Sponsor button to TARDIS (1313) (@jaladh-singhal) ### v3.0.dev3526 (2020/10/01 05:50) - [1312](https://github.com/tardis-sn/tardis/pull/1312) Add Matterbridge documentation (1312) (@epassaro) - [1274](https://github.com/tardis-sn/tardis/pull/1274) Add space to plasma error message (1274) (@marxwillia) - [1280](https://github.com/tardis-sn/tardis/pull/1280) Add widgets documentation to tardis docs (1280) (@marxwillia) ### v3.0.dev3510 (2020/09/25 11:56) - [1299](https://github.com/tardis-sn/tardis/pull/1299) Model configuration output in HDF (1299) (@andrewfullard) - [1304](https://github.com/tardis-sn/tardis/pull/1304) Use tardis-refdata from Azure mirror (CI/CD) (1304) (@epassaro) - [1264](https://github.com/tardis-sn/tardis/pull/1264) Add line info widget to widgets subpackage (1264) (@jaladh-singhal) ### v3.0.dev3504 (2020/09/09 06:16) - [1296](https://github.com/tardis-sn/tardis/pull/1296) Pin pyne to 0.7.0 (1296) (@andrewfullard) - [1319](https://github.com/tardis-sn/tardis/pull/1319) Numba montecarlo tests merged (1319) (@chvogl) - [1318](https://github.com/tardis-sn/tardis/pull/1318) Numba montecarlo profile1 (1318) (@Rodot-) - [1317](https://github.com/tardis-sn/tardis/pull/1317) Fixed `calculate_distance_line` showing nu_diff < 0 (1317) (@Rodot-) - [1309](https://github.com/tardis-sn/tardis/pull/1309) Re-add C formal integral (1309) (@chvogl) ### v3.0.dev3503 (2020/09/04 05:18) - [1291](https://github.com/tardis-sn/tardis/pull/1291) Download atom data from opensupernova mirror (1291) (@epassaro) - [1254](https://github.com/tardis-sn/tardis/pull/1254) Fix how virtual_packet properties are saved in hdf (1254) (@jaladh-singhal) - [1278](https://github.com/tardis-sn/tardis/pull/1278) Pin numpy to v1.19 (1278) (@epassaro) ### v3.0.dev3500 (2020/08/12 05:52) - [1271](https://github.com/tardis-sn/tardis/pull/1271) Move to NumPy 1.19 (1271) (@epassaro) - [1266](https://github.com/tardis-sn/tardis/pull/1266) Move to Pandas 1.x (1266) (@epassaro) - [1235](https://github.com/tardis-sn/tardis/pull/1235) test and fix for issue #1228 (1235) (@ebjordi) ### v3.0.dev3497 (2020/08/07 11:26) - [1267](https://github.com/tardis-sn/tardis/pull/1267) Temporarily fetch refdata from GDrive (1267) (@epassaro) - [1265](https://github.com/tardis-sn/tardis/pull/1265) add GIT_LFS_SMUDGE (1265) (@kaushik94) - [1262](https://github.com/tardis-sn/tardis/pull/1262) Update package versions (1262) (@epassaro) - [1263](https://github.com/tardis-sn/tardis/pull/1263) Clean up status badge display (1263) (@chvogl) - [1261](https://github.com/tardis-sn/tardis/pull/1261) Add governance document (1261) (@wkerzendorf) ### v3.0.dev3487 (2020/07/30 18:18) - [1259](https://github.com/tardis-sn/tardis/pull/1259) Emphasised reporting instructions in code of conduct (1259) (@harpolea) - [1255](https://github.com/tardis-sn/tardis/pull/1255) Pin pyne to v0.5 (1255) (@epassaro) - [1213](https://github.com/tardis-sn/tardis/pull/1213) Re-applied Black formatting to tardis after excluding undesired directories (1213) (@jaladh-singhal) ### v3.0.dev3484 (2020/07/19 10:30) - [1210](https://github.com/tardis-sn/tardis/pull/1210) [MRG] Using Mamba in Pipelines (1210) (@kaushik94) - [1237](https://github.com/tardis-sn/tardis/pull/1237) Add new Contribution guidelines (1237) (@jaladh-singhal) - [1238](https://github.com/tardis-sn/tardis/pull/1238) code of conduct symlink (1238) (@wkerzendorf) - [1234](https://github.com/tardis-sn/tardis/pull/1234) TARDIS Code of Conduct (1234) (@wkerzendorf) - [1233](https://github.com/tardis-sn/tardis/pull/1233) Update of the Governance model (1233) (@wkerzendorf) - [1231](https://github.com/tardis-sn/tardis/pull/1231) Roadmap Documentation Page (1231) (@marxwillia) - [1227](https://github.com/tardis-sn/tardis/pull/1227) Restore caching to spectrum_integrated (1227) (@arjunsavel) ### v3.0.dev3477 (2020/07/08 23:06) - [1218](https://github.com/tardis-sn/tardis/pull/1218) Move and rename coverage file (1218) (@arjunsavel) - [1224](https://github.com/tardis-sn/tardis/pull/1224) Added better mission statement (1224) (@ycamacho) - [1190](https://github.com/tardis-sn/tardis/pull/1190) Change `pytestconfig` to `request.config` (1190) (@epassaro) - [1219](https://github.com/tardis-sn/tardis/pull/1219) Update index.rst to add mission statement (1219) (@ycamacho) ### v3.0.dev3472 (2020/06/27 16:11) - [1203](https://github.com/tardis-sn/tardis/pull/1203) Minor changes to the environment file and cleanup (1203) (@epassaro) - [1209](https://github.com/tardis-sn/tardis/pull/1209) add sashank27 ORCID ID (1209) (@sashank27) - [1207](https://github.com/tardis-sn/tardis/pull/1207) add git-blame-ignore for code style black Changes (1207) (@wkerzendorf) - [1201](https://github.com/tardis-sn/tardis/pull/1201) Code style black (1201) (@wkerzendorf) - [1200](https://github.com/tardis-sn/tardis/pull/1200) Add jaladh-singhal's orcid to .orcid.csv (1200) (@jaladh-singhal) - [1197](https://github.com/tardis-sn/tardis/pull/1197) add arjun's name to the ORCID list (1197) (@arjunsavel) - [1166](https://github.com/tardis-sn/tardis/pull/1166) Create a new subpackage for jupyter-widgets and add shell info widgets (1166) (@jaladh-singhal) ### v3.0.dev3463 (2020/06/19 18:51) - [1195](https://github.com/tardis-sn/tardis/pull/1195) Fix badges in README.rst (1195) (@epassaro) - [1193](https://github.com/tardis-sn/tardis/pull/1193) Unpin astropy version (1193) (@epassaro) - [1191](https://github.com/tardis-sn/tardis/pull/1191) Add note to tell users which OS are supported (issue #1125) (1191) (@ebjordi) - [1158](https://github.com/tardis-sn/tardis/pull/1158) Make consistency edits to documentation (1158) (@arjunsavel) ### v3.0.dev3459 (2020/06/12 14:01) - [1185](https://github.com/tardis-sn/tardis/pull/1185) Upgrade pytest version (1185) (@epassaro) ### v3.0.dev3458 (2020/06/02 15:11) - [1180](https://github.com/tardis-sn/tardis/pull/1180) Remove test pipeline (1180) (@epassaro) - [1153](https://github.com/tardis-sn/tardis/pull/1153) update doc page to a notebook (1153) (@sashank27) - [1150](https://github.com/tardis-sn/tardis/pull/1150) Fix the Plasma tests (1150) (@wkerzendorf) - [1178](https://github.com/tardis-sn/tardis/pull/1178) Update mailmap (1178) (@epassaro) - [1171](https://github.com/tardis-sn/tardis/pull/1171) Print statement debug (1171) (@arjunsavel) - [1165](https://github.com/tardis-sn/tardis/pull/1165) Fix callbacks in run_tardis (1165) (@Rodot-) ### v3.0.dev3448 (2020/05/28 13:08) - [1173](https://github.com/tardis-sn/tardis/pull/1173) Fix GUI and plasma tests (1173) (@marxwillia) - [1168](https://github.com/tardis-sn/tardis/pull/1168) Add checkpoint to PR template checklist (1168) (@harpolea) - [1162](https://github.com/tardis-sn/tardis/pull/1162) Fix broken pipelines (1162) (@epassaro) ### v3.0.dev3442 (2020/05/21 19:34) - [1159](https://github.com/tardis-sn/tardis/pull/1159) Montecarlo/fix omp integrator (1159) (@Rodot-) - [1155](https://github.com/tardis-sn/tardis/pull/1155) CodeCov reintegration (1155) (@wkerzendorf) - [1157](https://github.com/tardis-sn/tardis/pull/1157) Update .mailmap (1157) (@epassaro) ### v3.0.dev3439 (2020/05/20 09:25) - [1142](https://github.com/tardis-sn/tardis/pull/1142) Split release pipeline (1142) (@epassaro) - [1151](https://github.com/tardis-sn/tardis/pull/1151) Git ignored VSCode specific files (1151) (@jaladh-singhal) - [1149](https://github.com/tardis-sn/tardis/pull/1149) Made plot size larger in quickstart notebook (1149) (@jaladh-singhal) - [1147](https://github.com/tardis-sn/tardis/pull/1147) allow downloading of example file in quickstart (1147) (@sashank27) - [1105](https://github.com/tardis-sn/tardis/pull/1105) Add skip condition if QT_API is no set (issue #1101) (1105) (@marxwillia) - [1143](https://github.com/tardis-sn/tardis/pull/1143) Set manual trigger on file (compare refdata) (1143) (@marxwillia) - [1144](https://github.com/tardis-sn/tardis/pull/1144) add option to execute quickstart in build (1144) (@sashank27) ### v3.0.dev3424 (2020/05/07 11:29) - [1133](https://github.com/tardis-sn/tardis/pull/1133) Solve pending issues of the release pipeline (1133) (@epassaro) - [1141](https://github.com/tardis-sn/tardis/pull/1141) fix warnings in quickstart (1141) (@sashank27) - [1137](https://github.com/tardis-sn/tardis/pull/1137) Increasing glob-like omission of coverage files (1137) (@arjunsavel) - [1139](https://github.com/tardis-sn/tardis/pull/1139) Added more file types to git ignore (1139) (@jaladh-singhal) - [1134](https://github.com/tardis-sn/tardis/pull/1134) Update mailmap (1134) (@orbitfold) - [1135](https://github.com/tardis-sn/tardis/pull/1135) Running tests on MacOS-10.14 (1135) (@orbitfold) - [1285](https://github.com/tardis-sn/tardis/pull/1285) Final numba PR (1285) (@arjunsavel) - [1244](https://github.com/tardis-sn/tardis/pull/1244) Fix numba_montecarlo virtual spectrum (1244) (@arjunsavel) - [1136](https://github.com/tardis-sn/tardis/pull/1136) Debugging relativity on numba_montecarlo (1136) (@arjunsavel) - [1068](https://github.com/tardis-sn/tardis/pull/1068) Migrate gui to PyQt5 (issue #988) (1068) (@ebjordi) - [1085](https://github.com/tardis-sn/tardis/pull/1085) Solves issue #680 for tardis.util.base (1085) (@marxwillia) - [1055](https://github.com/tardis-sn/tardis/pull/1055) renamed capmanager class functions to its new ones (1055) (@not4win) - [1048](https://github.com/tardis-sn/tardis/pull/1048) Re-activate TARDIS tests (1048) (@epassaro) ### v3.0.dev3409 (2020/02/24 23:02) - [1046](https://github.com/tardis-sn/tardis/pull/1046) Updated zenodo.json (1046) (@epassaro) - [1045](https://github.com/tardis-sn/tardis/pull/1045) Fix file paths at `diff` step in release pipeline (1045) (@epassaro) - [1040](https://github.com/tardis-sn/tardis/pull/1040) Re-activate release job (1040) (@epassaro) - [1039](https://github.com/tardis-sn/tardis/pull/1039) Update .mailmap (1039) (@epassaro) ### v3.0.dev3403 (2020/02/19 10:55) - [1031](https://github.com/tardis-sn/tardis/pull/1031) Create Zenodo JSON file (1031) (@epassaro) - [1036](https://github.com/tardis-sn/tardis/pull/1036) Update zenodo.json (1036) (@epassaro) - [1035](https://github.com/tardis-sn/tardis/pull/1035) Update .mailmap (1035) (@epassaro) - [1034](https://github.com/tardis-sn/tardis/pull/1034) Update .mailmap (1034) (@epassaro) - [1032](https://github.com/tardis-sn/tardis/pull/1032) Add Mark Magee to .mailmap (1032) (@epassaro) - [1025](https://github.com/tardis-sn/tardis/pull/1025) Add `compilers` to environment YAML file (1025) (@epassaro) - [1026](https://github.com/tardis-sn/tardis/pull/1026) Minor changes to Azure release (1026) (@epassaro) ### 3.0.dev3396 (2020/02/07 10:00) - [1027](https://github.com/tardis-sn/tardis/pull/1027) Added Mark Magee (1027) (@MarkMageeAstro) - [1024](https://github.com/tardis-sn/tardis/pull/1024) Add epassaro orcid (1024) (@epassaro) - [1022](https://github.com/tardis-sn/tardis/pull/1022) Added my orcid (1022) (@harpolea) ### 3.0.dev3384 (2020/02/02 16:56) - [1021](https://github.com/tardis-sn/tardis/pull/1021) Set cron job, disable CI and PR (1021) (@epassaro) ### 3.0.dev3383 (2020/02/02 14:01) - [1015](https://github.com/tardis-sn/tardis/pull/1015) Set up release TARDIS version with Azure Pipelines (1015) (@epassaro) - [1020](https://github.com/tardis-sn/tardis/pull/1020) Update .mailmap (1020) (@livnehra) - [1018](https://github.com/tardis-sn/tardis/pull/1018) Updated .mailmap (1018) (@epassaro) - [1010](https://github.com/tardis-sn/tardis/pull/1010) Pipeline for comparing reference data (1010) (@epassaro) - [1016](https://github.com/tardis-sn/tardis/pull/1016) Removed GH Action for release versions (1016) (@epassaro) - [1013](https://github.com/tardis-sn/tardis/pull/1013) Fixed typo in GH Action (1013) (@epassaro) - [1006](https://github.com/tardis-sn/tardis/pull/1006) Trying to get the right version number for automatic release (1006) (@epassaro) - [1008](https://github.com/tardis-sn/tardis/pull/1008) Improvements for the update_reference section [docs] (1008) (@epassaro) - [1011](https://github.com/tardis-sn/tardis/pull/1011) Gui fix (1011) (@marxwillia) - [1009](https://github.com/tardis-sn/tardis/pull/1009) Fix for packet source unit test (1009) (@epassaro) - [1007](https://github.com/tardis-sn/tardis/pull/1007) Fix for vboundary tests (1007) (@epassaro) - [995](https://github.com/tardis-sn/tardis/pull/995) Checking failing tests on Azure (995) (@kaushik94) - [1005](https://github.com/tardis-sn/tardis/pull/1005) Automatic TARDIS releases (1005) (@epassaro) - [1004](https://github.com/tardis-sn/tardis/pull/1004) Fixed csvy abundance indexing bug (1004) (@marxwillia) - [1003](https://github.com/tardis-sn/tardis/pull/1003) Custom source packets (1003) (@marxwillia) - [994](https://github.com/tardis-sn/tardis/pull/994) Large cleanup operation (994) (@wkerzendorf) - [992](https://github.com/tardis-sn/tardis/pull/992) Changes made to documentation for update_refdata (992) (@kowal180) - [967](https://github.com/tardis-sn/tardis/pull/967) log additional properties in hdf witeout when --with-vpacket-logging is present (967) (@kaushik94) - [969](https://github.com/tardis-sn/tardis/pull/969) Fixes numpydoc for util (969) (@kowal180) - [985](https://github.com/tardis-sn/tardis/pull/985) Fix typo (985) (@jreichenbach-msu) - [983](https://github.com/tardis-sn/tardis/pull/983) Fix installation documentation (983) (@jreichenbach-msu) - [982](https://github.com/tardis-sn/tardis/pull/982) Pinned `numpy` to v1.15 (982) (@epassaro) - [978](https://github.com/tardis-sn/tardis/pull/978) Add further fix to quickstart link (978) (@jreichenbach-msu) - [975](https://github.com/tardis-sn/tardis/pull/975) Add links to Quickstart (975) (@jreichenbach-msu) - [971](https://github.com/tardis-sn/tardis/pull/971) Fix formal integral spikes bug (971) (@chvogl) - [968](https://github.com/tardis-sn/tardis/pull/968) Fixed GUI #950 tardis/gui/widgets.py (968) (@marxwillia) - [965](https://github.com/tardis-sn/tardis/pull/965) Isotope time0 (965) (@marxwillia) - [966](https://github.com/tardis-sn/tardis/pull/966) fix AtomData repr (966) (@wkerzendorf) - [964](https://github.com/tardis-sn/tardis/pull/964) Raise error if requested atoms are not in the atomic data (964) (@chvogl) - [959](https://github.com/tardis-sn/tardis/pull/959) Csvy model config dict (959) (@marxwillia) - [960](https://github.com/tardis-sn/tardis/pull/960) Save integrated spectrum to hdf if requested (960) (@chvogl) - [957](https://github.com/tardis-sn/tardis/pull/957) add blondin converter (957) (@wkerzendorf) - [956](https://github.com/tardis-sn/tardis/pull/956) Dilution factor fix (956) (@marxwillia) - [953](https://github.com/tardis-sn/tardis/pull/953) add code comparison (953) (@wkerzendorf) - [952](https://github.com/tardis-sn/tardis/pull/952) Base schema fix (952) (@marxwillia) - [951](https://github.com/tardis-sn/tardis/pull/951) Documentation restructure (951) (@wkerzendorf) - [936](https://github.com/tardis-sn/tardis/pull/936) csvy_model (936) (@wkerzendorf) - [945](https://github.com/tardis-sn/tardis/pull/945) Revert "Remove PR Trigger" (945) (@wkerzendorf) - [928](https://github.com/tardis-sn/tardis/pull/928) Added csvy parser (928) (@marxwillia) - [933](https://github.com/tardis-sn/tardis/pull/933) Radiative recombination (933) (@chvogl) ### v3.0-alpha.3 (2019/05/13 18:05) - [930](https://github.com/tardis-sn/tardis/pull/930) Fix for conda-forge package (930) (@epassaro) - [918](https://github.com/tardis-sn/tardis/pull/918) Density docs (918) (@marxwillia) - [926](https://github.com/tardis-sn/tardis/pull/926) Adding a TARDIS data repo (926) (@wkerzendorf) - [924](https://github.com/tardis-sn/tardis/pull/924) Migrate beta_sobolev calculation from cython to numba (924) (@chvogl) - [925](https://github.com/tardis-sn/tardis/pull/925) Docs/fix changelog (925) (@wkerzendorf) - [923](https://github.com/tardis-sn/tardis/pull/923) Fix nlte normalization (923) (@wkerzendorf) - [831](https://github.com/tardis-sn/tardis/pull/831) Fix NLTE Normalization - issue #784 (831) (@livnehra) - [922](https://github.com/tardis-sn/tardis/pull/922) Revert "Fix nlte normalization " (922) (@wkerzendorf) - [920](https://github.com/tardis-sn/tardis/pull/920) Fix nlte normalization (920) (@wkerzendorf) - [921](https://github.com/tardis-sn/tardis/pull/921) Autoupdate changelog (921) (@wkerzendorf) - [919](https://github.com/tardis-sn/tardis/pull/919) Add possibility to bias vpacket emission based on optical depth (919) (@chvogl) - [914](https://github.com/tardis-sn/tardis/pull/914) make GUI python3 compatible (914) (@wkerzendorf) - [902](https://github.com/tardis-sn/tardis/pull/902) general overhaul of the docs for 3.0 (902) (@wkerzendorf) - [916](https://github.com/tardis-sn/tardis/pull/916) fix the documenation up a bit (916) (@wkerzendorf) - [915](https://github.com/tardis-sn/tardis/pull/915) Parsing STELLA files for TARDIS (915) (@sarafina325) - [911](https://github.com/tardis-sn/tardis/pull/911) Use Russian roulette to kill v-packets with negligible weight (911) (@chvogl) - [697](https://github.com/tardis-sn/tardis/pull/697) Relativity (697) (@chvogl) ### v3.0-alpha.2 (2019/03/11 10:24) ### v3.0.a1 (2019/03/10 11:03) - [901](https://github.com/tardis-sn/tardis/pull/901) .nojekyll added to docs (901) (@debajyotidasgupta) - [897](https://github.com/tardis-sn/tardis/pull/897) add pytest azurepipelines (897) (@wkerzendorf) - [896](https://github.com/tardis-sn/tardis/pull/896) Adding general build artefacts (896) (@wkerzendorf) - [894](https://github.com/tardis-sn/tardis/pull/894) Azure pipeline for TARDIS (894) (@wkerzendorf) - [893](https://github.com/tardis-sn/tardis/pull/893) add doctr to TARDIS (893) (@wkerzendorf) - [892](https://github.com/tardis-sn/tardis/pull/892) adding azure-pipelines (892) (@wkerzendorf) - [891](https://github.com/tardis-sn/tardis/pull/891) New template setup from astropy (891) (@wkerzendorf) - [888](https://github.com/tardis-sn/tardis/pull/888) Update installation.rst (888) (@nileshpatra) - [886](https://github.com/tardis-sn/tardis/pull/886) Pandas ix fix (886) (@wkerzendorf) - [879](https://github.com/tardis-sn/tardis/pull/879) Python3 version of TARDIS (879) (@wkerzendorf) - [881](https://github.com/tardis-sn/tardis/pull/881) Adds description of gcc problem to documentation (881) (@ycamacho) - [859](https://github.com/tardis-sn/tardis/pull/859) Use interpolated values to do formal integral with more shells (859) (@chvogl) - [873](https://github.com/tardis-sn/tardis/pull/873) Some small fixes related to the documentation and the building process (Fix #842) (873) (@unoebauer) - [868](https://github.com/tardis-sn/tardis/pull/868) Add Travis Stages: Activate Integration tests (868) (@unoebauer) - [866](https://github.com/tardis-sn/tardis/pull/866) Add Travis Caching and separate scripts for CI (866) (@wkerzendorf) - [869](https://github.com/tardis-sn/tardis/pull/869) Travis update2 (869) (@wkerzendorf) - [864](https://github.com/tardis-sn/tardis/pull/864) Unify unittest hdfs (864) (@unoebauer) - [865](https://github.com/tardis-sn/tardis/pull/865) Adding CodeCov integration (865) (@wkerzendorf) - [860](https://github.com/tardis-sn/tardis/pull/860) Enabling the addition of callbacks in run_tardis (860) (@wkerzendorf) - [863](https://github.com/tardis-sn/tardis/pull/863) Thomson cross section: Continuation of PR #688 (863) (@unoebauer) - [850](https://github.com/tardis-sn/tardis/pull/850) Add full test for formal integral method (850) (@unoebauer) - [861](https://github.com/tardis-sn/tardis/pull/861) Describe refdata update and workflow refactor (861) (@wkerzendorf) - [848](https://github.com/tardis-sn/tardis/pull/848) Add capability to store information about the plasma state during iterations (848) (@unoebauer) - [857](https://github.com/tardis-sn/tardis/pull/857) Refactor logging (857) (@wkerzendorf) - [856](https://github.com/tardis-sn/tardis/pull/856) Extend formal integral to line_interaction_type macroatom (856) (@chvogl) - [855](https://github.com/tardis-sn/tardis/pull/855) Make the conda-forge channel the only channel (855) (@wkerzendorf) - [853](https://github.com/tardis-sn/tardis/pull/853) Fix formal integral (853) (@chvogl) - [849](https://github.com/tardis-sn/tardis/pull/849) Missing refdata (849) (@wkerzendorf) - [851](https://github.com/tardis-sn/tardis/pull/851) add atomic data description (851) (@wkerzendorf) - [846](https://github.com/tardis-sn/tardis/pull/846) update the OPENMP text to be correct (846) (@wkerzendorf) - [847](https://github.com/tardis-sn/tardis/pull/847) Revert "change to new cython version" (847) (@wkerzendorf) - [839](https://github.com/tardis-sn/tardis/pull/839) change to new cython version (839) (@wkerzendorf) - [845](https://github.com/tardis-sn/tardis/pull/845) Update Documentation: new location of tardis_example (845) (@unoebauer) - [843](https://github.com/tardis-sn/tardis/pull/843) Fix issue with custom_composition reader (843) (@unoebauer) - [844](https://github.com/tardis-sn/tardis/pull/844) Remove bbsampling from schema file (844) (@pfreddy) - [837](https://github.com/tardis-sn/tardis/pull/837) Add json sphinx (837) (@wkerzendorf) - [841](https://github.com/tardis-sn/tardis/pull/841) Fixed indentation and position of delta_treatment in plasma/standard_plasmas.py (841) (@Heringer-Epson) - [838](https://github.com/tardis-sn/tardis/pull/838) fix current cython installation problem (838) (@wkerzendorf) - [821](https://github.com/tardis-sn/tardis/pull/821) Simplify convergence strategies (821) (@unoebauer) - [833](https://github.com/tardis-sn/tardis/pull/833) restructure landing page to use notebooks (833) (@wkerzendorf) - [832](https://github.com/tardis-sn/tardis/pull/832) Fixes #830 (832) (@unoebauer) ### v2.0.2 (2018/06/18 16:24) ### v2_test3 (2018/06/18 16:13) - [829](https://github.com/tardis-sn/tardis/pull/829) build bleeding edge cython (829) (@wkerzendorf) - [828](https://github.com/tardis-sn/tardis/pull/828) trying to get travis to build (828) (@wkerzendorf) - [827](https://github.com/tardis-sn/tardis/pull/827) Update travis link to miniconda (827) (@unoebauer) - [826](https://github.com/tardis-sn/tardis/pull/826) Remove tardis_example.tar.gz from documentation; fixes #824 (826) (@unoebauer) - [820](https://github.com/tardis-sn/tardis/pull/820) update of mailmap (820) (@wkerzendorf) - [819](https://github.com/tardis-sn/tardis/pull/819) Reintroduce and update changelog (819) (@unoebauer) - [815](https://github.com/tardis-sn/tardis/pull/815) Update and Fix Documentation (815) (@unoebauer) - [816](https://github.com/tardis-sn/tardis/pull/816) Remove old and broken badges (816) (@unoebauer) - [814](https://github.com/tardis-sn/tardis/pull/814) Fix numpydoc problem (814) (@unoebauer) - [813](https://github.com/tardis-sn/tardis/pull/813) Request specific sphinx version (813) (@unoebauer) ### v2.0 (2018/04/05 09:03) - [812](https://github.com/tardis-sn/tardis/pull/812) Update of documentation (812) (@unoebauer) - [809](https://github.com/tardis-sn/tardis/pull/809) fix dependencies for tardis conda env (809) (@wkerzendorf) - [761](https://github.com/tardis-sn/tardis/pull/761) Add caching for integrated spectrum: Fix #760 (761) (@wkerzendorf) - [715](https://github.com/tardis-sn/tardis/pull/715) Merge 'generate_reference_path' and 'reference_path' in integration tests (bug #672) (715) (@wkerzendorf) - [801](https://github.com/tardis-sn/tardis/pull/801) Decay of isotopes branch (801) (@wkerzendorf) - [806](https://github.com/tardis-sn/tardis/pull/806) Fix reference dictionary problem (806) (@wkerzendorf) - [802](https://github.com/tardis-sn/tardis/pull/802) Fix for PR #801 (802) (@wkerzendorf) - [772](https://github.com/tardis-sn/tardis/pull/772) [TEP007] CMFGEN density parser (772) (@wkerzendorf) - [771](https://github.com/tardis-sn/tardis/pull/771) [TEP007] Add cmfgen2tardis script (771) (@wkerzendorf) - [757](https://github.com/tardis-sn/tardis/pull/757) [TEP007] Decay and merge isotopic abundance dataframe (757) (@wkerzendorf) - [767](https://github.com/tardis-sn/tardis/pull/767) [TEP007] Docs for isotope config (767) (@wkerzendorf) - [764](https://github.com/tardis-sn/tardis/pull/764) [TEP007] Isotope stratified file support (764) (@wkerzendorf) - [762](https://github.com/tardis-sn/tardis/pull/762) [TEP007] Isotope uniform config option (762) (@wkerzendorf) - [756](https://github.com/tardis-sn/tardis/pull/756) [TEP007] [WIP] Isotope Abundances class (756) (@wkerzendorf) - [803](https://github.com/tardis-sn/tardis/pull/803) include yml files in MANIFEST (803) (@wkerzendorf) - [799](https://github.com/tardis-sn/tardis/pull/799) tardis/plasma/standard_plasmas.py: old database files warning (799) (@wkerzendorf) - [797](https://github.com/tardis-sn/tardis/pull/797) Minor Updates: Fixes for #521 and #699 (797) (@wkerzendorf) - [796](https://github.com/tardis-sn/tardis/pull/796) Prevent pandas SettingWithCopyWarning by copying DataFrames when slicing (796) (@wkerzendorf) - [795](https://github.com/tardis-sn/tardis/pull/795) Force deactivate LaTeX in GUI - Fix #441 (795) (@wkerzendorf) - [793](https://github.com/tardis-sn/tardis/pull/793) Add pyside to requirements (needed for GUI) (793) (@wkerzendorf) - [794](https://github.com/tardis-sn/tardis/pull/794) add new readthedocs.yml (794) (@wkerzendorf) - [792](https://github.com/tardis-sn/tardis/pull/792) Fix compatibility with networkx 2.0 (792) (@wkerzendorf) - [791](https://github.com/tardis-sn/tardis/pull/791) Propagate changes to the line index into the GUI code (791) (@wkerzendorf) - [786](https://github.com/tardis-sn/tardis/pull/786) The final carsus merge (786) (@wkerzendorf) - [782](https://github.com/tardis-sn/tardis/pull/782) Plasma write_to_tex/dot unit tests (782) (@wkerzendorf) - [781](https://github.com/tardis-sn/tardis/pull/781) Omit coverage of test related files (781) (@wkerzendorf) - [785](https://github.com/tardis-sn/tardis/pull/785) [DOC] Update Running tests doc (785) (@wkerzendorf) - [774](https://github.com/tardis-sn/tardis/pull/774) Replace Comparison values in Plasma Unit Tests with reference HDF file (774) (@wkerzendorf) - [780](https://github.com/tardis-sn/tardis/pull/780) LevelBoltzmannFactorNLTE.from_config is now a staticmethod (780) (@wkerzendorf) - [778](https://github.com/tardis-sn/tardis/pull/778) Fix NLTE (778) (@wkerzendorf) - [776](https://github.com/tardis-sn/tardis/pull/776) Fix compatibility bug in radiative_properties (776) (@wkerzendorf) - [779](https://github.com/tardis-sn/tardis/pull/779) Save coverage report when tests use tardis-refdata (779) (@wkerzendorf) - [775](https://github.com/tardis-sn/tardis/pull/775) Transition from atomic-dataset config option to tardis-refdata (775) (@wkerzendorf) - [769](https://github.com/tardis-sn/tardis/pull/769) [TEP014] [DOC] Updated to_hdf notebook (769) (@wkerzendorf) - [759](https://github.com/tardis-sn/tardis/pull/759) Formal Integral: including electron scattering (759) (@wkerzendorf) - [768](https://github.com/tardis-sn/tardis/pull/768) [TEP014] Simulation HDF and deprecated to_hdf cleanup. (768) (@wkerzendorf) - [773](https://github.com/tardis-sn/tardis/pull/773) Update Documentation (773) (@wkerzendorf) - [752](https://github.com/tardis-sn/tardis/pull/752) [TEP014] PlasmaWriterMixin (752) (@wkerzendorf) - [748](https://github.com/tardis-sn/tardis/pull/748) [TEP014] Update Runner and Spectrum classes to use HDFWriter + Unit Tests (748) (@wkerzendorf) - [765](https://github.com/tardis-sn/tardis/pull/765) Attempt to fix up the GUI (765) (@wkerzendorf) - [758](https://github.com/tardis-sn/tardis/pull/758) Add new version to tardis_env27 and add pyne (758) (@wkerzendorf) - [753](https://github.com/tardis-sn/tardis/pull/753) [TEP014][DOC] HDFWriter Documentation (753) (@wkerzendorf) - [740](https://github.com/tardis-sn/tardis/pull/740) [GSoC] Formal integral Project (740) (@wkerzendorf) - [750](https://github.com/tardis-sn/tardis/pull/750) [TEP005][QOL] Add MontecarloRunner.spectrum_integrated (750) (@wkerzendorf) - [745](https://github.com/tardis-sn/tardis/pull/745) [TEP005][DOC] Documentation (745) (@wkerzendorf) - [746](https://github.com/tardis-sn/tardis/pull/746) [TEP005][CONFIG] Prevent incompatible configurations (746) (@wkerzendorf) - [741](https://github.com/tardis-sn/tardis/pull/741) Add unit tests for the formal integral (741) (@wkerzendorf) - [747](https://github.com/tardis-sn/tardis/pull/747) [TEP014] Update Model and Density classes to use HDFWriter + Unit Tests (747) (@wkerzendorf) - [749](https://github.com/tardis-sn/tardis/pull/749) [TEP014] Change name of HDFWriter to HDFWriterMixin (749) (@wkerzendorf) - [751](https://github.com/tardis-sn/tardis/pull/751) [QOL] Add default axis to TARDISSpectrum.plot (751) (@wkerzendorf) - [743](https://github.com/tardis-sn/tardis/pull/743) Fix bug in plasma (743) (@wkerzendorf) - [744](https://github.com/tardis-sn/tardis/pull/744) [TEP014] Added HDFWriter class + Unit Tests (744) (@wkerzendorf) - [742](https://github.com/tardis-sn/tardis/pull/742) Fix clash in RTD dependencies (742) (@wkerzendorf) - [735](https://github.com/tardis-sn/tardis/pull/735) Move common ctest fixtures into conftest.py (735) (@wkerzendorf) - [729](https://github.com/tardis-sn/tardis/pull/729) Refactor spectrum (729) (@wkerzendorf) - [730](https://github.com/tardis-sn/tardis/pull/730) Fix test_plasma_simple not skipping properly (730) (@wkerzendorf) - [712](https://github.com/tardis-sn/tardis/pull/712) Colorize Logger (712) (@wkerzendorf) - [718](https://github.com/tardis-sn/tardis/pull/718) Unit test for untested method of montecarlo simulation code (718) (@unoebauer) - [724](https://github.com/tardis-sn/tardis/pull/724) Rebase PR #678 (724) (@wkerzendorf) - [709](https://github.com/tardis-sn/tardis/pull/709) Add note about broken GUI to docu (709) (@wkerzendorf) - [708](https://github.com/tardis-sn/tardis/pull/708) Add new installation instructions (708) (@wkerzendorf) - [704](https://github.com/tardis-sn/tardis/pull/704) Fix ignoring model tests (704) (@wkerzendorf) - [700](https://github.com/tardis-sn/tardis/pull/700) Add contributing guidelines (700) (@wkerzendorf) - [686](https://github.com/tardis-sn/tardis/pull/686) converted spectrum_frequency (686) (@wkerzendorf) - [696](https://github.com/tardis-sn/tardis/pull/696) Add missing diagnostics property to runner's to_hdf list (696) (@wkerzendorf) - [694](https://github.com/tardis-sn/tardis/pull/694) Significantly reduce peak memory usage when vpacket logging is enabled (694) (@wkerzendorf) - [682](https://github.com/tardis-sn/tardis/pull/682) Import montecarlo.base in the __init__ module of the package. (682) (@wkerzendorf) - [670](https://github.com/tardis-sn/tardis/pull/670) Integrate continuum interactions into cmontecarlo (670) (@wkerzendorf) - [652](https://github.com/tardis-sn/tardis/pull/652) [TEP006] Aggregate TARDIS restructure and configuration system cleanup (652) (@wkerzendorf) - [677](https://github.com/tardis-sn/tardis/pull/677) Update link to tardis_example.yml in documentation - Fix #676 (677) (@wkerzendorf) - [674](https://github.com/tardis-sn/tardis/pull/674) Change matplotlib backend - fix test_integration remote plotting issue (674) (@yeganer) - [664](https://github.com/tardis-sn/tardis/pull/664) Kd final test (664) (@wkerzendorf) - [668](https://github.com/tardis-sn/tardis/pull/668) change to tardis atom data on git lfs (668) (@wkerzendorf) - [666](https://github.com/tardis-sn/tardis/pull/666) Remove News from main TARDIS github page (666) (@wkerzendorf) - [667](https://github.com/tardis-sn/tardis/pull/667) Update SOCIS and GSOC students credits (667) (@wkerzendorf) - [665](https://github.com/tardis-sn/tardis/pull/665) Add to_hdf compression (665) (@wkerzendorf) - [663](https://github.com/tardis-sn/tardis/pull/663) Develop (663) (@wkerzendorf) - [507](https://github.com/tardis-sn/tardis/pull/507) Unit tests for untested methods of tardis/util.py (507) (@) - [657](https://github.com/tardis-sn/tardis/pull/657) Require pyyaml 3.12 (657) (@wkerzendorf) - [659](https://github.com/tardis-sn/tardis/pull/659) Update installation docs (659) (@wkerzendorf) - [653](https://github.com/tardis-sn/tardis/pull/653) Facility to provide per-setup atom data as well as save report locally. (653) (@wkerzendorf) - [641](https://github.com/tardis-sn/tardis/pull/641) Fix detailed radiative rates (641) (@wkerzendorf) - [642](https://github.com/tardis-sn/tardis/pull/642) Use pytest-html==1.10.0, modify DokuReport class accordingly. (642) (@wkerzendorf) - [630](https://github.com/tardis-sn/tardis/pull/630) Create an overview page on Dokuwiki. (630) (@yeganer) - [620](https://github.com/tardis-sn/tardis/pull/620) Runner script to automate execution of integration tests. (620) (@wkerzendorf) - [628](https://github.com/tardis-sn/tardis/pull/628) Remove exponent property from yaml files with exponential density (628) (@wkerzendorf) - [626](https://github.com/tardis-sn/tardis/pull/626) Revert "Add exponent as a property for exponential density" (626) (@wkerzendorf) - [542](https://github.com/tardis-sn/tardis/pull/542) Updates to He NLTE treatment. (542) (@wkerzendorf) - [612](https://github.com/tardis-sn/tardis/pull/612) Add facility to generate and accept HDF files as reference data for Integration Tests. (612) (@wkerzendorf) - [614](https://github.com/tardis-sn/tardis/pull/614) Omit the integration_tests when running coveralls (614) (@wkerzendorf) - [619](https://github.com/tardis-sn/tardis/pull/619) Fixed incorrect name in error message (619) (@wkerzendorf) - [618](https://github.com/tardis-sn/tardis/pull/618) to_hdf: If only the last run is stored, do not add a counter in the name (618) (@wkerzendorf) - [617](https://github.com/tardis-sn/tardis/pull/617) Add a to_hdf method on TARDISSpectrum (617) (@wkerzendorf) - [600](https://github.com/tardis-sn/tardis/pull/600) Parametrize the Slow Test class with two setups. (600) (@wkerzendorf) - [613](https://github.com/tardis-sn/tardis/pull/613) Fix bug in montecarlo.pyx (613) (@wkerzendorf) - [595](https://github.com/tardis-sn/tardis/pull/595) Line absorption rate estimator (595) (@wkerzendorf) - [606](https://github.com/tardis-sn/tardis/pull/606) Merge to_hdf (606) (@wkerzendorf) - [597](https://github.com/tardis-sn/tardis/pull/597) Use abundances, densities filepaths relative to w7 config file. (597) (@wkerzendorf) - [569](https://github.com/tardis-sn/tardis/pull/569) Added a conda environment for tardis (569) (@wkerzendorf) - [565](https://github.com/tardis-sn/tardis/pull/565) Change the way AtomData quantities are initialized (565) (@wkerzendorf) - [599](https://github.com/tardis-sn/tardis/pull/599) Update the tardis_example tar file provided in the documentation. (599) (@wkerzendorf) - [598](https://github.com/tardis-sn/tardis/pull/598) Fix convergence handling in run_legacy_simulation - fix issue #593 (598) (@wkerzendorf) - [590](https://github.com/tardis-sn/tardis/pull/590) Link images of comparison plots in DokuReport using hookwrapper. (590) (@wkerzendorf) - [591](https://github.com/tardis-sn/tardis/pull/591) Fix path of CSS and JS files used in html report. (591) (@wkerzendorf) - [594](https://github.com/tardis-sn/tardis/pull/594) Provide tardis.yaml_load shortcut (594) (@wkerzendorf) - [592](https://github.com/tardis-sn/tardis/pull/592) Fix virt energy (592) (@wkerzendorf) - [583](https://github.com/tardis-sn/tardis/pull/583) Subclass pytest-html's HTMLReport to DokuReport class for report generation and upload. (583) (@yeganer) - [588](https://github.com/tardis-sn/tardis/pull/588) Embed comparison plots in Dokuwiki Report. (588) (@) - [587](https://github.com/tardis-sn/tardis/pull/587) Move the three spectra attributes from Radial1DModel to MontecarloRunner (587) (@wkerzendorf) - [578](https://github.com/tardis-sn/tardis/pull/578) Shift slow test related pytest hooks in lower level conftest.py (578) (@) - [581](https://github.com/tardis-sn/tardis/pull/581) Update several files to match package_template (581) (@yeganer) - [576](https://github.com/tardis-sn/tardis/pull/576) [config-system] Validator rewrite: Use jsonschema (576) (@wkerzendorf) - [549](https://github.com/tardis-sn/tardis/pull/549) [TEP006] Create a JSON schema in YAML to replace the old tardis_config_definition.yml (549) (@ftsamis) - [575](https://github.com/tardis-sn/tardis/pull/575) Replace misused calls to yaml.load with a helper function. (575) (@wkerzendorf) - [570](https://github.com/tardis-sn/tardis/pull/570) Enable generation of html report of integration tests, and upload to dokuwiki. (570) (@wkerzendorf) - [574](https://github.com/tardis-sn/tardis/pull/574) tardis/base.py: Remove duplicate code from run_tardis (574) (@wkerzendorf) - [573](https://github.com/tardis-sn/tardis/pull/573) io/util.py (YAMLLoader): Use OrderedDict to store loaded YAML (573) (@wkerzendorf) - [572](https://github.com/tardis-sn/tardis/pull/572) Change the way YAMLLoader resolves some properties (572) (@wkerzendorf) - [532](https://github.com/tardis-sn/tardis/pull/532) Documentation overhaul (532) (@wkerzendorf) - [571](https://github.com/tardis-sn/tardis/pull/571) [config] Set the exponent property as mandatory when density is exponential (571) (@ftsamis) - [566](https://github.com/tardis-sn/tardis/pull/566) Initial laydown of comparison plots for TestW7. (566) (@) - [567](https://github.com/tardis-sn/tardis/pull/567) Accept keyword arguments for Configuration.from_yaml (567) (@wkerzendorf) - [561](https://github.com/tardis-sn/tardis/pull/561) TestW7: Assertions for spectrum quantities, fixture for handling baseline data. (561) (@wkerzendorf) - [515](https://github.com/tardis-sn/tardis/pull/515) [config-system] Add a custom YAML Loader to parse astropy quantities (515) (@wkerzendorf) - [555](https://github.com/tardis-sn/tardis/pull/555) Use pytest's monkeypatch.chdir to change the working directory in the config_reader tests (555) (@wkerzendorf) - [558](https://github.com/tardis-sn/tardis/pull/558) Integration Test class for Stratified W7 setup. (558) (@wkerzendorf) - [557](https://github.com/tardis-sn/tardis/pull/557) Enable skipping slow tests. (557) (@unoebauer) - [544](https://github.com/tardis-sn/tardis/pull/544) Continue cmontecarlo tests refactor. Extend #530. (544) (@unoebauer) - [543](https://github.com/tardis-sn/tardis/pull/543) Fix issue #535: Treat rel. paths inside config relative to the config file (543) (@wkerzendorf) - [551](https://github.com/tardis-sn/tardis/pull/551) Add SOCIS 2016 advertisement (551) (@wkerzendorf) - [547](https://github.com/tardis-sn/tardis/pull/547) Fix Issue #548 (547) (@wkerzendorf) - [545](https://github.com/tardis-sn/tardis/pull/545) added mailmap to compile the commits for each person (545) (@wkerzendorf) - [539](https://github.com/tardis-sn/tardis/pull/539) Adding OSX to our travis build (539) (@wkerzendorf) - [541](https://github.com/tardis-sn/tardis/pull/541) Move progress bar update after calculation (541) (@yeganer) - [540](https://github.com/tardis-sn/tardis/pull/540) Mirroring C enums in Python for CMontecarlo tests. (540) (@yeganer) - [538](https://github.com/tardis-sn/tardis/pull/538) Upgrading to the new Readthedocs infrastructure (538) (@wkerzendorf) - [530](https://github.com/tardis-sn/tardis/pull/530) Refactor cmontecarlo tests for exercising parametrization. (530) (@yeganer) - [537](https://github.com/tardis-sn/tardis/pull/537) Ignore invalid OpenMP nthreads values (537) (@yeganer) - [527](https://github.com/tardis-sn/tardis/pull/527) Unit tests for untested methods of tardis/atomic.py (527) (@) - [533](https://github.com/tardis-sn/tardis/pull/533) Remove rpacket.recently_crossed_boundary flag (533) (@wkerzendorf) - [514](https://github.com/tardis-sn/tardis/pull/514) Performance (514) (@wkerzendorf) - [531](https://github.com/tardis-sn/tardis/pull/531) Organize headers in C-Extension (531) (@wkerzendorf) - [526](https://github.com/tardis-sn/tardis/pull/526) Docs: Include conda-requirements in installation.rst (526) (@ssim) ### v1.0.1 (2015/03/03 08:12) ### v1.0 (2015/03/03 07:58) ### 1.0rc3 (2015/03/03 07:54) ### v1.0rc3 (2015/02/19 09:40) ### 0.9.2 (2014/06/12 19:37) ### 0.9.1 (2014/02/03 20:51) ### v0.9a (2013/02/14 16:15)