Compare Atomic Files

This notebook shows how to compare atomic files generated by Carsus.

[20]:

import os
import logging
from carsus.io import AtomDataCompare

[21]:

ATOM1_PATH = os.environ.get("ATOM1_PATH", None)
ATOM2_PATH = os.environ.get("ATOM2_PATH", None)

[23]:

atc = AtomDataCompare(ATOM1_PATH, ATOM2_PATH)

A brief overview of what keys match can be seen using the comparison table.

[24]:

atc.compare()

[24]:
exists_1 exists_2 match
atom_data True True False
collision_data_temperatures False True False
collisions False True False
ionization_data True True False
levels True True False
lines True True False
macro_atom_data True True False
macro_atom_references True True False
metadata True False False
zeta_data True True True

One can investigate further into the difference between the dataframes using the key_diff method. The key_diff method currently supports differentiating levels, lines and the collisions dataframes.

[6]:

atc.key_diff("levels")

[6]:
total_rows not_matches_energy not_matches_g not_matches_metastable
atomic_number ion_number
3 0 67 8 4 2
6 0 829 825 652 29
1 85 57 57 1
2 79 68 51 2
7 0 276 265 202 4
1 152 137 125 1
2 89 67 50 11
8 2 137 131 92 4
3 137 131 103 19
9 0 117 100 72 1
1 163 144 115 22
2 242 230 198 15
3 136 123 117 1
4 90 73 55 2
10 0 264 217 163 20
1 279 251 215 4
2 61 49 46 3
3 95 93 65 10
4 60 24 16 4
11 4 66 57 44 5
12 0 539 516 415 56
13 0 272 232 264 58
1 192 138 123 5
14 0 539 485 380 110
1 96 86 70 12
2 163 135 122 6
15 0 230 204 163 13
1 91 74 60 5
3 50 39 33 5
16 0 150 51 54 3
1 84 72 64 3
2 41 26 21 14
17 0 209 193 164 20
1 124 83 67 4
18 0 211 205 161 8
1 306 301 254 10
3 37 18 11 2
4 21 15 14 1
19 2 38 19 14 2
21 3 125 1 4 0
25 0 321 248 255 5
29 1 245 102 95 3
30 2 250 204 171 27 
[7]:

atc.key_diff("lines")

[7]:
total_rows not_matches_line_id not_matches_wavelength not_matches_f_ul not_matches_f_lu not_matches_nu not_matches_B_lu not_matches_B_ul not_matches_A_ul
atomic_number ion_number
1 0 74 74 74 0 0 74 74 74 74
2 0 174 174 171 0 0 171 171 171 171
1 67 67 61 0 0 61 61 61 61
3 0 370 187 40 50 50 40 50 50 50
1 135 47 0 0 0 0 0 0 0
4 0 39 8 0 0 0 0 0 0 0
1 185 31 0 0 0 0 0 0 0
2 27 8 0 0 0 0 0 0 0
5 0 87 22 0 0 0 0 0 0 0
1 43 11 0 0 0 0 0 0 0
2 100 13 0 0 0 0 0 0 0
6 0 585 585 585 583 584 585 585 585 585
1 156 123 111 131 126 111 131 131 131
2 84 74 74 75 75 74 75 75 75
3 200 18 0 8 8 0 8 8 8
7 0 1093 1082 1082 1081 1082 1082 1082 1082 1082
1 427 415 415 415 414 415 415 415 415
2 65 13 13 13 13 13 13 13 13
3 404 26 0 0 0 0 0 0 0
4 229 6 0 0 0 0 0 0 0
5 24 12 0 0 0 0 0 0 0
8 0 854 399 0 0 0 0 0 0 0
1 1376 126 0 2 2 0 2 2 2
2 93 92 92 92 92 92 92 92 92
3 27 27 27 27 27 27 27 27 27
4 459 25 0 0 0 0 0 0 0
5 214 55 0 0 0 0 0 0 0
9 0 506 474 474 473 471 474 474 474 474
1 86 71 71 71 71 71 71 71 71
2 446 430 430 430 430 430 430 430 430
3 250 247 247 249 249 247 249 249 249
4 58 27 27 27 27 27 27 27 27
10 0 436 134 134 134 134 134 134 134 134
1 852 799 799 799 798 799 799 799 799
2 50 37 37 37 37 37 37 37 37
3 44 44 44 44 44 44 44 44 44
4 103 21 17 17 17 17 17 17 17
5 49 2 0 0 0 0 0 0 0
11 0 342 305 10 0 0 10 10 10 10
1 171 171 0 0 0 0 0 0 0
2 353 353 0 0 0 0 0 0 0
3 110 110 0 0 0 0 0 0 0
4 112 106 106 106 105 106 106 106 106
5 375 375 0 0 0 0 0 0 0
12 0 375 371 325 324 325 325 325 325 325
1 516 516 0 0 0 0 0 0 0
2 704 704 0 0 0 0 0 0 0
3 169 169 0 0 0 0 0 0 0
4 132 132 0 0 0 0 0 0 0
5 180 180 0 0 0 0 0 0 0
13 0 172 171 172 172 172 172 172 172 172
1 674 654 438 444 444 438 444 444 444
2 342 342 0 0 0 0 0 0 0
3 142 142 0 0 0 0 0 0 0
4 77 77 0 0 0 0 0 0 0
5 93 93 0 0 0 0 0 0 0
14 0 1009 1002 727 726 723 727 727 727 727
1 71 70 62 62 62 62 62 62 62
2 293 291 232 232 232 232 232 232 232
3 307 307 0 0 0 0 0 0 0
4 125 125 0 0 0 0 0 0 0
5 49 49 0 0 0 0 0 0 0
15 0 185 183 121 119 115 121 121 121 121
1 299 291 277 276 275 277 277 277 277
2 151 151 0 0 0 0 0 0 0
3 45 45 36 39 39 36 39 39 39
4 215 215 0 0 0 0 0 0 0
5 9 9 0 0 0 0 0 0 0
16 0 361 361 2 4 4 2 4 4 4
1 198 197 186 186 186 186 186 186 186
2 44 41 19 19 19 19 19 19 19
3 50 50 0 0 0 0 0 0 0
4 41 41 0 0 0 0 0 0 0
5 150 150 0 0 0 0 0 0 0
17 0 363 362 336 336 336 336 336 336 336
1 322 320 224 230 230 224 230 230 230
2 431 431 0 0 0 0 0 0 0
3 121 121 0 0 0 0 0 0 0
4 43 43 0 0 0 0 0 0 0
18 0 630 627 628 626 627 628 628 628 628
1 779 778 633 766 779 633 779 766 766
2 675 675 0 20 20 0 20 20 20
3 65 63 30 30 30 30 30 30 30
4 30 27 29 30 30 29 30 30 30
19 0 603 603 30 0 0 30 30 30 30
1 66 66 0 0 0 0 0 0 0
2 99 98 57 57 57 57 57 57 57
3 57 57 0 0 0 0 0 0 0
4 75 75 0 0 0 0 0 0 0
20 0 2906 2906 0 0 0 0 0 0 0
1 752 752 0 0 0 0 0 0 0
2 1766 1766 0 0 0 0 0 0 0
3 122 122 0 0 0 0 0 0 0
4 91 91 0 0 0 0 0 0 0
5 37 37 0 0 0 0 0 0 0
6 59 59 0 0 0 0 0 0 0
7 100 100 0 0 0 0 0 0 0
8 422 422 0 0 0 0 0 0 0
21 0 4221 4221 0 0 0 0 0 0 0
1 2215 2215 0 0 0 0 0 0 0
2 217 217 0 0 0 0 0 0 0
3 942 942 0 7 7 0 7 7 7
4 29 29 0 0 0 0 0 0 0
5 89 89 0 0 0 0 0 0 0
6 41 41 0 0 0 0 0 0 0
7 60 60 0 0 0 0 0 0 0
8 52 52 0 0 0 0 0 0 0
22 0 8771 8771 0 0 0 0 0 0 0
1 2597 2597 0 0 0 0 0 0 0
2 2289 2289 0 0 0 0 0 0 0
3 139 139 0 0 0 0 0 0 0
4 331 331 0 0 0 0 0 0 0
5 60 60 0 0 0 0 0 0 0
6 119 119 0 0 0 0 0 0 0
7 40 40 0 0 0 0 0 0 0
8 67 67 0 0 0 0 0 0 0
23 0 6995 6995 0 0 0 0 0 0 0
1 4545 4545 0 0 0 0 0 0 0
2 5304 5304 0 0 0 0 0 0 0
3 995 995 0 0 0 0 0 0 0
4 335 335 0 0 0 0 0 0 0
5 372 372 0 0 0 0 0 0 0
6 32 32 0 0 0 0 0 0 0
7 77 77 0 0 0 0 0 0 0
8 33 33 0 0 0 0 0 0 0
24 0 4172 4172 0 0 0 0 0 0 0
1 17224 17224 0 0 0 0 0 0 0
2 2122 2122 0 0 0 0 0 0 0
3 1717 1717 0 0 0 0 0 0 0
4 220 220 0 0 0 0 0 0 0
5 255 255 0 0 0 0 0 0 0
6 421 421 0 0 0 0 0 0 0
7 31 31 0 0 0 0 0 0 0
8 67 67 0 0 0 0 0 0 0
25 0 1078 1076 991 1044 1044 991 1044 1044 1044
1 8362 8362 0 0 0 0 0 0 0
2 5848 5848 0 0 0 0 0 0 0
3 677 677 0 0 0 0 0 0 0
4 602 602 0 0 0 0 0 0 0
5 1009 1009 0 0 0 0 0 0 0
6 58 58 0 0 0 0 0 0 0
7 97 97 0 0 0 0 0 0 0
8 5 5 0 0 0 0 0 0 0
26 0 22905 22905 0 0 0 0 0 0 0
1 21753 21753 0 0 0 0 0 0 0
2 9860 9860 0 0 0 0 0 0 0
3 3559 3559 0 0 0 0 0 0 0
4 1865 1865 0 0 0 0 0 0 0
5 660 660 0 0 0 0 0 0 0
6 477 477 0 0 0 0 0 0 0
7 59 59 0 0 0 0 0 0 0
8 109 109 0 0 0 0 0 0 0
27 0 5298 5298 0 0 0 0 0 0 0
1 2853 2853 0 0 0 0 0 0 0
2 2247 2247 0 0 0 0 0 0 0
3 4092 4092 0 0 0 0 0 0 0
4 3542 3542 0 0 0 0 0 0 0
5 1907 1907 0 0 0 0 0 0 0
6 289 289 0 0 0 0 0 0 0
7 234 234 0 0 0 0 0 0 0
8 48 48 0 0 0 0 0 0 0
28 0 2671 2671 0 0 0 0 0 0 0
1 17150 17150 0 0 0 0 0 0 0
2 5456 5456 0 0 0 0 0 0 0
3 2712 2712 0 0 0 0 0 0 0
4 4733 4733 0 0 0 0 0 0 0
6 174 174 0 0 0 0 0 0 0
7 153 153 0 0 0 0 0 0 0
8 66 66 0 0 0 0 0 0 0
29 0 253 253 0 0 0 0 0 0 0
1 1640 1639 555 555 555 555 555 555 555
30 0 98 98 0 0 0 0 0 0 0
1 6 6 0 0 0 0 0 0 0
2 427 426 240 240 240 240 240 240 240

One can also investigate specific ions:

[8]:

atc.ion_diff("lines",(1,0))

[8]:
pct_change_wavelength pct_change_f_ul pct_change_f_lu pct_change_nu pct_change_B_lu pct_change_B_ul pct_change_A_ul
level_number_lower level_number_upper
0 1 0.000002 0.000000 0.000000 -0.000002 0.000002 0.000002 -0.000003
3 0.000002 0.000000 0.000000 -0.000002 0.000002 0.000002 -0.000003
4 0.000002 0.000000 0.000000 -0.000002 0.000002 0.000002 -0.000004
6 0.000002 0.000000 0.000000 -0.000002 0.000002 0.000002 -0.000004
9 0.000002 0.000000 0.000000 -0.000002 0.000002 0.000002 -0.000004
11 0.000001 0.000000 0.000000 -0.000001 0.000001 0.000001 -0.000002
16 0.000002 0.000000 0.000000 -0.000002 0.000002 0.000002 -0.000004
18 0.000002 0.000000 0.000000 -0.000002 0.000002 0.000002 -0.000004
1 5 0.000002 0.000000 0.000000 -0.000002 0.000002 0.000002 -0.000004
7 0.000002 0.000000 0.000000 -0.000002 0.000002 0.000002 -0.000004
10 0.000002 0.000000 0.000000 -0.000002 0.000002 0.000002 -0.000004
12 0.000002 0.000000 0.000000 -0.000002 0.000002 0.000002 -0.000003
17 0.000002 0.000000 0.000000 -0.000002 0.000002 0.000002 -0.000004
19 0.000002 0.000000 0.000000 -0.000002 0.000002 0.000002 -0.000004
2 4 0.000002 0.000000 0.000000 -0.000002 0.000002 0.000002 -0.000004
6 0.000002 0.000000 0.000000 -0.000002 0.000002 0.000002 -0.000003
9 0.000002 0.000000 0.000000 -0.000002 0.000002 0.000002 -0.000003
11 0.000001 0.000000 0.000000 -0.000001 0.000002 0.000002 -0.000003
16 0.000002 0.000000 0.000000 -0.000002 0.000002 0.000002 -0.000003
18 0.000002 0.000000 0.000000 -0.000002 0.000002 0.000002 -0.000003
3 5 0.000002 0.000000 0.000000 -0.000002 0.000002 0.000002 -0.000004
7 0.000002 0.000000 0.000000 -0.000002 0.000002 0.000002 -0.000004
8 0.000002 0.000000 0.000000 -0.000002 0.000002 0.000002 -0.000004
10 0.000002 0.000000 0.000000 -0.000002 0.000002 0.000002 -0.000004
12 0.000002 0.000000 0.000000 -0.000002 0.000002 0.000002 -0.000004
13 0.000002 0.000000 0.000000 -0.000002 0.000002 0.000002 -0.000004
17 0.000002 0.000000 0.000000 -0.000002 0.000002 0.000002 -0.000004
19 0.000002 0.000000 0.000000 -0.000002 0.000002 0.000002 -0.000004
20 0.000002 0.000000 0.000000 -0.000002 0.000002 0.000002 -0.000004
4 10 0.000002 0.000000 0.000000 -0.000002 0.000002 0.000002 -0.000004
12 0.000001 0.000000 0.000000 -0.000001 0.000001 0.000001 -0.000002
17 0.000002 0.000000 0.000000 -0.000002 0.000002 0.000002 -0.000003
19 0.000001 0.000000 0.000000 -0.000001 0.000001 0.000001 -0.000002
5 9 0.000002 0.000000 0.000000 -0.000002 0.000002 0.000002 -0.000004
11 0.000002 0.000000 0.000000 -0.000002 0.000002 0.000002 -0.000004
16 0.000002 0.000000 0.000000 -0.000002 0.000002 0.000002 -0.000004
18 0.000002 0.000000 0.000000 -0.000002 0.000002 0.000002 -0.000004
6 10 0.000002 0.000000 0.000000 -0.000002 0.000002 0.000002 -0.000005
12 0.000001 0.000000 0.000000 -0.000001 0.000001 0.000001 -0.000002
13 0.000001 0.000000 0.000000 -0.000001 0.000001 0.000001 -0.000002
17 0.000002 0.000000 0.000000 -0.000002 0.000002 0.000002 -0.000004
19 0.000001 0.000000 0.000000 -0.000001 0.000002 0.000002 -0.000003
20 0.000001 0.000000 0.000000 -0.000001 0.000002 0.000002 -0.000003
7 9 0.000002 0.000000 0.000000 -0.000002 0.000002 0.000002 -0.000003
11 0.000001 0.000000 0.000000 -0.000001 0.000001 0.000001 -0.000002
14 0.000001 0.000000 0.000000 -0.000001 0.000001 0.000001 -0.000002
16 0.000002 0.000000 0.000000 -0.000002 0.000002 0.000002 -0.000003
18 0.000001 0.000000 0.000000 -0.000001 0.000002 0.000002 -0.000003
21 0.000001 0.000000 0.000000 -0.000001 0.000002 0.000002 -0.000003
8 11 0.000002 0.000000 0.000000 -0.000002 0.000002 0.000002 -0.000004
14 0.000002 0.000000 0.000000 -0.000002 0.000002 0.000002 -0.000003
15 0.000002 0.000000 0.000000 -0.000002 0.000002 0.000002 -0.000004
18 0.000002 0.000000 0.000000 -0.000002 0.000002 0.000002 -0.000004
21 0.000002 0.000000 0.000000 -0.000002 0.000002 0.000002 -0.000004
22 0.000002 0.000000 0.000000 -0.000002 0.000002 0.000002 -0.000005
9 17 0.000002 0.000000 0.000000 -0.000002 0.000002 0.000002 -0.000004
19 0.000001 0.000000 0.000000 -0.000001 0.000001 0.000001 -0.000002
10 16 -0.000000 0.000000 0.000000 0.000000 -0.000000 -0.000000 0.000001
18 -0.000000 0.000000 0.000000 0.000000 -0.000000 -0.000000 0.000001
11 17 0.000003 0.000000 0.000000 -0.000003 0.000003 0.000003 -0.000006
19 0.000002 0.000000 0.000000 -0.000002 0.000002 0.000002 -0.000004
20 0.000002 0.000000 0.000000 -0.000002 0.000002 0.000002 -0.000004
12 16 0.000002 0.000000 0.000000 -0.000002 0.000002 0.000002 -0.000004
18 0.000002 0.000000 0.000000 -0.000002 0.000002 0.000002 -0.000004
21 0.000002 0.000000 0.000000 -0.000002 0.000002 0.000002 -0.000004
13 18 0.000002 0.000000 0.000000 -0.000002 0.000002 0.000002 -0.000004
21 0.000002 0.000000 0.000000 -0.000002 0.000002 0.000002 -0.000004
22 0.000004 0.000000 0.000000 -0.000004 0.000004 0.000004 -0.000008
14 19 0.000002 0.000000 0.000000 -0.000002 0.000002 0.000002 -0.000004
20 0.000002 0.000000 0.000000 -0.000002 0.000002 0.000002 -0.000004
23 0.000004 0.000000 0.000000 -0.000004 0.000004 0.000004 -0.000008
15 20 0.000002 0.000000 0.000000 -0.000002 0.000002 0.000002 -0.000004
23 0.000004 0.000000 0.000000 -0.000004 0.000004 0.000004 -0.000008
24 0.000001 0.000000 0.000000 -0.000001 0.000001 0.000001 -0.000003 
[10]:

atc.ion_diff("levels",(3,0))

[10]:
pct_change_energy pct_change_g
level_number
57 -0.000000 0.000000
58 -0.000000 -0.333333
59 -0.000013 0.000000
60 -0.000013 -0.250000
61 -0.005822 2.000000
62 -0.005822 1.000000
63 -0.004462 0.000000
64 -0.004462 0.000000
65 -0.003512 0.000000
66 -0.003512 0.000000 
[11]:

atc.ion_diff("levels",(1,0))

All the values in both the dataframes match.

Both the ion_diff and key_diff methods allow displaying detailed information:

[12]:

atc.ion_diff("lines",(1,0), simplify_output=False)

[12]:
line_id_1 line_id_2 matches_line_id wavelength_1 wavelength_2 matches_wavelength pct_change_wavelength f_ul_1 f_ul_2 matches_f_ul pct_change_f_ul f_lu_1 f_lu_2 matches_f_lu pct_change_f_lu nu_1 nu_2 matches_nu pct_change_nu B_lu_1 B_lu_2 matches_B_lu pct_change_B_lu B_ul_1 B_ul_2 matches_B_ul pct_change_B_ul A_ul_1 A_ul_2 matches_A_ul pct_change_A_ul
level_number_lower level_number_upper
0 1 533125 533089 False 1215.674000 1215.676000 False 0.000002 0.139000 0.139000 True 0.000000 0.139000 0.139000 True 0.000000 2466059634408567.000000 2466055577308427.000000 False -0.000002 2837052905.321615 2837057778.838667 False 0.000002 2837052905.321615 2837057778.838667 False 0.000002 627368588.243199 627366525.048786 False -0.000003
3 533126 533090 False 1215.668000 1215.670000 False 0.000002 0.138750 0.138750 True 0.000000 0.277500 0.277500 True 0.000000 2466071805789080.500000 2466067748648893.000000 False -0.000002 5663872629.992867 5663882359.494301 False 0.000002 2831936314.996433 2831941179.747150 False 0.000002 626246409.178241 626244349.664110 False -0.000003
4 533127 533091 False 1025.723000 1025.725000 False 0.000002 0.026350 0.026350 True 0.000000 0.026350 0.026350 True 0.000000 2922742865276493.000000 2922737166394501.000000 False -0.000002 453780907.571722 453781825.332716 False 0.000002 453780907.571722 453781825.332716 False 0.000002 167056223.131353 167055571.950010 False -0.000004
6 533128 533092 False 1025.722000 1025.724000 False 0.000002 0.026250 0.026250 True 0.000000 0.052500 0.052500 True 0.000000 2922745714725822.000000 2922740015832719.000000 False -0.000002 904116676.336302 904118504.892298 False 0.000002 452058338.168151 452059252.446149 False 0.000002 166422558.167649 166421909.455684 False -0.000004
9 533129 533093 False 972.537000 972.539000 False 0.000002 0.009650 0.009650 True 0.000000 0.009650 0.009650 True 0.000000 3082581516178818.500000 3082575176933778.000000 False -0.000002 157568337.295176 157568672.775322 False 0.000002 157568337.295176 157568672.775322 False 0.000002 68054566.848782 68054287.060014 False -0.000004
11 533130 533094 False 972.537000 972.538000 False 0.000001 0.009675 0.009675 True 0.000000 0.019350 0.019350 True 0.000000 3082581516178818.500000 3082578346553039.000000 False -0.000001 315953090.845768 315953438.669138 False 0.000001 157976545.422884 157976719.334569 False 0.000001 68230874.016784 68230733.817751 False -0.000002
16 533131 533095 False 949.743000 949.745000 False 0.000002 0.004650 0.004650 True 0.000000 0.004650 0.004650 True 0.000000 3156564017844827.000000 3156557370662651.000000 False -0.000002 74147166.638423 74147328.165407 False 0.000002 74147166.638423 74147328.165407 False 0.000002 34386104.369040 34385959.605169 False -0.000004
18 533132 533096 False 949.743000 949.745000 False 0.000002 0.004650 0.004650 True 0.000000 0.009300 0.009300 True 0.000000 3156564017844827.000000 3156557370662651.000000 False -0.000002 148294333.276846 148294656.330815 False 0.000002 74147166.638423 74147328.165407 False 0.000002 34386104.369040 34385959.605169 False -0.000004
1 5 533139 533103 False 6564.564000 6564.576000 False 0.000002 0.013600 0.013600 True 0.000000 0.013600 0.013600 True 0.000000 456682969348764.000000 456682134535421.562500 False -0.000002 1498926373.529900 1498929222.431827 False 0.000002 1498926373.529900 1498929222.431827 False 0.000002 2105083.666798 2105075.974226 False -0.000004
7 533140 533104 False 6564.523000 6564.536000 False 0.000002 0.347500 0.347500 True 0.000000 0.695000 0.695000 True 0.000000 456685821650712.437500 456684917258432.187500 False -0.000002 76599067880.042526 76599225135.918060 False 0.000002 38299533940.021263 38299612567.959030 False 0.000002 53788655.286609 53788442.338812 False -0.000004
10 533141 533105 False 4862.646000 4862.656000 False 0.000002 0.003045 0.003045 True 0.000000 0.003045 0.003045 True 0.000000 616521247896721.250000 616519980027375.875000 False -0.000002 248596755.947285 248597285.240945 False 0.000002 248596755.947285 248597285.240945 False 0.000002 858982.300974 858978.769462 False -0.000004
12 533142 533106 False 4862.637000 4862.645000 False 0.000002 0.061000 0.061000 True 0.000000 0.122000 0.122000 True 0.000000 616522388983590.625000 616521374683942.500000 False -0.000002 9960179997.267080 9960197107.159893 False 0.000002 4980089998.633540 4980098553.579947 False 0.000002 17207919.317153 17207862.725677 False -0.000003
17 533143 533107 False 4341.651000 4341.659000 False 0.000002 0.001215 0.001215 True 0.000000 0.001215 0.001215 True 0.000000 690503354599437.000000 690502082268552.125000 False -0.000002 88565931.349961 88566100.975759 False 0.000002 88565931.349961 88566100.975759 False 0.000002 429940.823970 429939.240273 False -0.000004
19 533144 533108 False 4341.647000 4341.655000 False 0.000002 0.022200 0.022200 True 0.000000 0.044400 0.044400 True 0.000000 690503990766637.500000 690502718433408.375000 False -0.000002 3236480435.433443 3236486634.104351 False 0.000002 1618240217.716721 1618243317.052176 False 0.000002 7855723.357507 7855694.420734 False -0.000004
2 4 533133 533097 False 6564.584000 6564.596000 False 0.000002 0.145000 0.145000 True 0.000000 0.145000 0.145000 True 0.000000 456681577994888.875000 456680743186633.187500 False -0.000002 15981248995.314295 15981279369.639841 False 0.000002 15981248995.314295 15981279369.639841 False 0.000002 22443769.984281 22443687.968639 False -0.000004
6 533134 533098 False 6564.538000 6564.549000 False 0.000002 0.145000 0.145000 True 0.000000 0.290000 0.290000 True 0.000000 456684778121476.312500 456684012869734.062500 False -0.000002 31962274019.862495 31962329899.567265 False 0.000002 15981137009.931248 15981164949.783632 False 0.000002 22444084.527982 22444009.348558 False -0.000003
9 533135 533099 False 4862.656000 4862.664000 False 0.000002 0.034250 0.034250 True 0.000000 0.034250 0.034250 True 0.000000 616519980027376.000000 616518965735654.250000 False -0.000002 2796208998.713606 2796213802.106439 False 0.000002 2796208998.713606 2796213802.106439 False 0.000002 9661748.047312 9661716.272963 False -0.000003
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16 533137 533101 False 4341.658000 4341.665000 False 0.000002 0.014000 0.014000 True 0.000000 0.014000 0.014000 True 0.000000 690502241309656.250000 690501128023465.500000 False -0.000002 1020514434.580109 1020516154.064373 False 0.000002 1020514434.580109 1020516154.064373 False 0.000002 4954034.671881 4954018.705686 False -0.000003
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4 10 533158 533122 False 18755.948000 18755.988000 False 0.000002 0.032250 0.032250 True 0.000000 0.032250 0.032250 True 0.000000 159838605865190.062500 159838264985027.687500 False -0.000002 10155568618.199112 10155591014.159319 False 0.000002 10155568618.199112 10155591014.159319 False 0.000002 611496.401547 611493.794371 False -0.000004
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5 9 533154 533118 False 18756.001000 18756.043000 False 0.000002 0.161500 0.161500 True 0.000000 0.161500 0.161500 True 0.000000 159838154199288.000000 159837796277178.468750 False -0.000002 50856712138.099579 50856829714.503868 False 0.000002 50856712138.099579 50856829714.503868 False 0.000002 3062204.983719 3062191.274681 False -0.000004
11 533155 533119 False 18755.842000 18755.877000 False 0.000002 0.161750 0.161750 True 0.000000 0.323500 0.323500 True 0.000000 159839509204652.031250 159839210931059.062500 False -0.000002 101870011808.740829 101870209305.872345 False 0.000002 50935005904.370415 50935104652.936172 False 0.000002 3066997.238522 3066985.797211 False -0.000004
16 533156 533120 False 12821.488000 12821.513000 False 0.000002 0.040350 0.040350 True 0.000000 0.040350 0.040350 True 0.000000 233820331930272.062500 233819876016192.406250 False -0.000002 8685953003.334278 8685970570.531132 False 0.000002 8685953003.334278 8685970570.531132 False 0.000002 1637227.027266 1637220.645368 False -0.000004
18 533157 533121 False 12821.450000 12821.474000 False 0.000002 0.040250 0.040250 True 0.000000 0.080500 0.080500 True 0.000000 233821024923078.093750 233820587242933.187500 False -0.000002 17328801597.032982 17328835292.801041 False 0.000002 8664400798.516491 8664417646.400520 False 0.000002 1633179.144117 1633173.032734 False -0.000004
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13 533164 533128 False 18756.131000 18756.152000 False 0.000001 0.371667 0.371667 True 0.000000 0.557500 0.557500 True 0.000000 159837046350337.375000 159836867391563.031250 False -0.000001 175559216917.893555 175559426231.121490 False 0.000001 117039477945.262360 117039617487.414322 False 0.000001 7047081.995285 7047066.226986 False -0.000002
17 533165 533129 False 12821.644000 12821.667000 False 0.000002 0.014850 0.014850 True 0.000000 0.007425 0.007425 True 0.000000 233817487055482.125000 233817067624670.000000 False -0.000002 1598363958.942763 1598366942.246820 False 0.000002 3196727917.885525 3196733884.493641 False 0.000002 602533.574569 602531.413900 False -0.000004
19 533166 533130 False 12821.609000 12821.628000 False 0.000001 0.013925 0.013925 True 0.000000 0.013925 0.013925 True 0.000000 233818125322648.656250 233817778834325.812500 False -0.000001 2997596952.381573 2997601612.161328 False 0.000002 2997596952.381573 2997601612.161328 False 0.000002 565005.106596 565003.433028 False -0.000003
20 533167 533131 False 12821.596000 12821.615000 False 0.000001 0.083667 0.083667 True 0.000000 0.125500 0.125500 True 0.000000 233818362394198.031250 233818015905172.593750 False -0.000001 27016016954.492298 27016058951.069077 False 0.000002 18010677969.661533 18010705967.379383 False 0.000002 3394771.258765 3394761.203306 False -0.000003
7 9 533168 533132 False 18756.342000 18756.373000 False 0.000002 0.018350 0.018350 True 0.000000 0.009175 0.009175 True 0.000000 159835248258962.218750 159834984087808.437500 False -0.000002 2889280602.096209 2889285587.278631 False 0.000002 5778561204.192417 5778571174.557261 False 0.000002 347922.094676 347920.945197 False -0.000003
11 533169 533133 False 18756.184000 18756.207000 False 0.000001 0.001832 0.001832 True 0.000000 0.001832 0.001832 True 0.000000 159836594693248.843750 159836398691910.343750 False -0.000001 577063989.377794 577064738.922756 False 0.000001 577063989.377794 577064738.922756 False 0.000001 34745.394012 34745.308858 False -0.000002
14 533170 533134 False 18756.131000 18756.152000 False 0.000001 0.678333 0.678333 True 0.000000 1.017500 1.017500 True 0.000000 159837046350337.375000 159836867391563.031250 False -0.000001 320415252401.716064 320415634421.822632 False 0.000001 213610168267.810699 213610422947.881744 False 0.000001 12861714.673009 12861685.894095 False -0.000002
16 533171 533135 False 12821.647000 12821.667000 False 0.000002 0.003685 0.003685 True 0.000000 0.001842 0.001842 True 0.000000 233817432347029.937500 233817067624670.000000 False -0.000002 396631149.281868 396631796.779767 False 0.000002 793262298.563737 793263593.559533 False 0.000002 149517.520758 149517.054560 False -0.000003
18 533172 533136 False 12821.609000 12821.628000 False 0.000001 0.000367 0.000367 True 0.000000 0.000367 0.000367 True 0.000000 233818125322648.656250 233817778834325.812500 False -0.000001 79110727.468598 79110850.446628 False 0.000002 79110727.468598 79110850.446628 False 0.000002 14911.265829 14911.221662 False -0.000003
21 533173 533137 False 12821.596000 12821.615000 False 0.000001 0.104500 0.104500 True 0.000000 0.156750 0.156750 True 0.000000 233818362394198.031250 233818015905172.593750 False -0.000001 33743112809.694561 33743165263.586277 False 0.000002 22495408539.796375 22495443509.057514 False 0.000002 4240082.827183 4240070.267874 False -0.000003
8 11 533174 533138 False 18756.310000 18756.344000 False 0.000002 0.016500 0.016500 True 0.000000 0.011000 0.011000 True 0.000000 159835520952682.000000 159835231215635.593750 False -0.000002 3463981732.966854 3463988263.802550 False 0.000002 5195972599.450280 5195982395.703824 False 0.000002 312846.547714 312845.414040 False -0.000004
14 533175 533139 False 18756.258000 18756.289000 False 0.000002 0.048500 0.048500 True 0.000000 0.048500 0.048500 True 0.000000 159835964081961.343750 159835699908441.343750 False -0.000002 15272968025.182159 15272994377.367657 False 0.000002 15272968025.182159 15272994377.367657 False 0.000002 919584.345215 919581.307041 False -0.000003
15 533176 533140 False 18756.229000 18756.262000 False 0.000002 0.727500 0.727500 True 0.000000 0.970000 0.970000 True 0.000000 159836211212818.968750 159835929995006.437500 False -0.000002 305458888217.462585 305459447832.601318 False 0.000002 229094166163.096924 229094585874.450989 False 0.000002 13793807.832803 13793759.318299 False -0.000004
18 533177 533141 False 12821.668000 12821.692000 False 0.000002 0.003325 0.003325 True 0.000000 0.002217 0.002217 True 0.000000 233817049388581.875000 233816611723320.125000 False -0.000002 477178012.252622 477178940.107694 False 0.000002 715767018.378934 715768410.161542 False 0.000002 134910.211132 134909.706304 False -0.000004
21 533178 533142 False 12821.655000 12821.680000 False 0.000002 0.007467 0.007467 True 0.000000 0.007467 0.007467 True 0.000000 233817286457949.437500 233816830555746.125000 False -0.000002 1607334832.632292 1607338083.399690 False 0.000002 1607334832.632292 1607338083.399690 False 0.000002 302956.877935 302955.697027 False -0.000004
22 533179 533143 False 12821.649000 12821.680000 False 0.000002 0.112000 0.112000 True 0.000000 0.149333 0.149333 True 0.000000 233817395874742.812500 233816830555746.125000 False -0.000002 32146681609.332008 32146761667.993801 False 0.000002 24110011206.999004 24110071250.995354 False 0.000002 4544357.422163 4544335.455401 False -0.000005
9 17 533182 533146 False 40522.218000 40522.305000 False 0.000002 0.053000 0.053000 True 0.000000 0.053000 0.053000 True 0.000000 73982243025295.406250 73982084187955.234375 False -0.000002 36058244909.477638 36058324944.436989 False 0.000002 36058244909.477638 36058324944.436989 False 0.000002 215293.877258 215292.953168 False -0.000004
19 533183 533147 False 40521.873000 40521.922000 False 0.000001 0.305000 0.305000 True 0.000000 0.610000 0.610000 True 0.000000 73982872904221.375000 73982783442503.046875 False -0.000001 415006455248.867004 415006987227.073730 False 0.000001 207503227624.433502 207503493613.536865 False 0.000001 1238976.428213 1238973.433926 False -0.000002
10 16 533180 533144 False 40522.316000 40522.305000 False -0.000000 0.181500 0.181500 True 0.000000 0.181500 0.181500 True 0.000000 73982064105121.734375 73982084187955.234375 False 0.000000 123482778842.156128 123482754290.854965 False -0.000000 123482778842.156128 123482754290.854965 False -0.000000 737276.409790 737276.811319 False 0.000001
18 533181 533145 False 40521.939000 40521.922000 False -0.000000 0.181500 0.181500 True 0.000000 0.363000 0.363000 True 0.000000 73982752404814.578125 73982783442503.046875 False 0.000000 246963260036.387970 246963174366.275055 False -0.000000 123481630018.193985 123481587183.137527 False -0.000000 737290.128507 737290.748385 False 0.000001
11 17 533184 533148 False 40522.957000 40523.074000 False 0.000003 0.106000 0.106000 True 0.000000 0.053000 0.053000 True 0.000000 73980893842470.562500 73980680241582.843750 False -0.000003 36058902500.406845 36059009230.582169 False 0.000003 72117805000.813690 72118018461.164337 False 0.000003 430572.049766 430569.564168 False -0.000006
19 533185 533149 False 40522.612000 40522.691000 False 0.000002 0.061000 0.061000 True 0.000000 0.061000 0.061000 True 0.000000 73981523698423.000000 73981379469591.484375 False -0.000002 41501402374.824081 41501486297.327301 False 0.000002 41501402374.824081 41501486297.327301 False 0.000002 247786.247773 247785.282064 False -0.000004
20 533186 533150 False 40522.481000 40522.562000 False 0.000002 0.365000 0.365000 True 0.000000 0.547500 0.547500 True 0.000000 73981762863927.296875 73981614982784.156250 False -0.000002 372490890906.855286 372491662530.036926 False 0.000002 248327260604.570190 248327775020.024567 False 0.000002 1482665.003194 1482659.078363 False -0.000004
12 16 533187 533151 False 40522.990000 40523.074000 False 0.000002 0.046400 0.046400 True 0.000000 0.023200 0.023200 True 0.000000 73980833595941.468750 73980680241582.843750 False -0.000002 15784287156.039282 15784321021.688795 False 0.000002 31568574312.078564 31568642043.377590 False 0.000002 188476.514811 188475.733749 False -0.000004
18 533188 533152 False 40522.612000 40522.691000 False 0.000002 0.004650 0.004650 True 0.000000 0.004650 0.004650 True 0.000000 73981523698423.000000 73981379469591.484375 False -0.000002 3163631492.507081 3163637889.878229 False 0.000002 3163631492.507081 3163637889.878229 False 0.000002 18888.623806 18888.550190 False -0.000004
21 533189 533153 False 40522.481000 40522.562000 False 0.000002 0.593333 0.593333 True 0.000000 0.890000 0.890000 True 0.000000 73981762863927.296875 73981614982784.156250 False -0.000002 605510306679.636963 605511561007.731201 False 0.000002 403673537786.424683 403674374005.154175 False 0.000002 2410176.900170 2410167.268936 False -0.000004
13 18 533190 533154 False 40522.858000 40522.945000 False 0.000002 0.041750 0.041750 True 0.000000 0.027833 0.027833 True 0.000000 73981074582646.656250 73980915750323.656250 False -0.000002 18936547188.244686 18936589219.204178 False 0.000002 28404820782.367031 28404883828.806267 False 0.000002 169589.348234 169588.620329 False -0.000004
21 533191 533155 False 40522.727000 40522.816000 False 0.000002 0.042500 0.042500 True 0.000000 0.042500 0.042500 True 0.000000 73981313745247.203125 73981151260563.921875 False -0.000002 28914993548.910950 28915059155.014347 False 0.000002 28914993548.910950 28915059155.014347 False 0.000002 172636.979652 172636.221623 False -0.000004
22 533192 533156 False 40522.661000 40522.816000 False 0.000004 0.636250 0.636250 True 0.000000 0.848333 0.848333 True 0.000000 73981434239967.593750 73981151260563.921875 False -0.000004 577165009623.355591 577167259211.854858 False 0.000004 432873757217.516663 432875444408.891174 False 0.000004 2584485.555332 2584465.788419 False -0.000008
14 19 533193 533157 False 40522.858000 40522.945000 False 0.000002 0.012425 0.012425 True 0.000000 0.008283 0.008283 True 0.000000 73981074582646.656250 73980915750323.656250 False -0.000002 5635607157.220125 5635619665.835015 False 0.000002 8453410735.830187 8453429498.752523 False 0.000002 50470.602438 50470.385811 False -0.000004
20 533194 533158 False 40522.727000 40522.816000 False 0.000002 0.000592 0.000592 True 0.000000 0.000592 0.000592 True 0.000000 73981313745247.203125 73981151260563.921875 False -0.000002 402542067.053466 402542980.393337 False 0.000002 402542067.053466 402542980.393337 False 0.000002 2403.377560 2403.367007 False -0.000004
23 533195 533159 False 40522.661000 40522.816000 False 0.000004 0.942500 0.942500 True 0.000000 1.256667 1.256667 True 0.000000 73981434239967.593750 73981151260563.921875 False -0.000004 854975279481.355713 854978611877.678955 False 0.000004 641231459611.016846 641233958908.259277 False 0.000004 3828491.372731 3828462.091292 False -0.000008
15 20 533196 533160 False 40522.858000 40522.945000 False 0.000002 0.011833 0.011833 True 0.000000 0.008875 0.008875 True 0.000000 73981074582646.656250 73980915750323.656250 False -0.000002 6038150525.592990 6038163927.680373 False 0.000002 8050867367.457321 8050885236.907165 False 0.000002 48067.240418 48067.034105 False -0.000004
23 533197 533161 False 40522.793000 40522.945000 False 0.000004 0.067375 0.067375 True 0.000000 0.067375 0.067375 True 0.000000 73981193250919.281250 73980915750323.656250 False -0.000004 45838843843.212334 45839019112.953827 False 0.000004 45838843843.212334 45839019112.953827 False 0.000004 273679.496838 273677.444184 False -0.000008
24 533198 533162 False 40522.760000 40522.816000 False 0.000001 1.080000 1.080000 True 0.000000 1.350000 1.350000 True 0.000000 73981253498034.187500 73981151260563.921875 False -0.000001 918477013639.626953 918478349629.867432 False 0.000001 734781610911.701538 734782679703.893921 False 0.000001 4387003.161266 4386991.043602 False -0.000003

But these complex dataframes can also be represented in smaller formats:

[13]:

atc.ion_diff("lines","He",return_summary=True)

[13]:
total_rows matches_line_id matches_wavelength matches_f_ul matches_f_lu matches_nu matches_B_lu matches_B_ul matches_A_ul
values 174 0 3 174 174 3 3 3 3

Specific columns can be plotted:

[14]:

atc.plot_ion_diff(key_name="lines", ion="Fe", column="wavelength")

[                py.warnings][WARNING] - /home/atharva/workspace/code/tardis-main/carsus/carsus/io/atom_data_compare.py:189: PerformanceWarning: indexing past lexsort depth may impact performance.
  df1 = df1.loc[parsed_ion]
 (warnings.py:110)
[                py.warnings][WARNING] - /home/atharva/workspace/code/tardis-main/carsus/carsus/io/atom_data_compare.py:190: PerformanceWarning: indexing past lexsort depth may impact performance.
  df2 = df2.loc[parsed_ion]
 (warnings.py:110)
../_images/development_compare_atomic_files_18_1.png 
[15]:

atc.plot_ion_diff(key_name="lines", ion=(23,0), column="f_ul")
../_images/development_compare_atomic_files_19_0.png

The dataframes are available as attributes as well:

[16]:

atc.lines1

[16]:
line_id wavelength f_ul f_lu nu B_lu B_ul A_ul
atomic_number ion_number level_number_lower level_number_upper
3 0 22 66 1824 16404.816436 0.000458 0.000305 1.827466e+14 8.411155e+07 1.261673e+08 1.135375e+04
29 66 1925 27592.029652 0.001227 0.000818 1.086518e+14 3.790250e+08 5.685376e+08 1.075264e+04
37 66 2000 43823.900517 0.000276 0.000276 6.840844e+13 2.030891e+08 2.030891e+08 9.586502e+02
38 66 2002 43823.973537 0.002517 0.001678 6.840832e+13 1.234798e+09 1.852197e+09 8.742965e+03
44 66 2050 67909.408678 0.000619 0.000619 4.414594e+13 7.061638e+08 7.061638e+08 8.958233e+02
... ... ... ... ... ... ... ... ... ... ... ...
2 1 11 21 533438 10126.249000 0.593500 0.890250 2.960548e+14 1.513548e+11 1.009032e+11 3.860697e+07
13 21 533440 10126.499000 0.042400 0.042400 2.960475e+14 7.208762e+09 7.208762e+09 2.757969e+06
22 533441 10126.436000 0.636000 0.848000 2.960493e+14 1.441743e+11 1.081308e+11 4.137005e+07
14 23 533442 10126.436000 1.009500 1.346000 2.960493e+14 2.288428e+11 1.716321e+11 6.566521e+07
15 24 533443 10126.523000 1.047000 1.308750 2.960468e+14 2.225115e+11 1.780092e+11 6.810331e+07

271771 rows × 8 columns

[17]:

atc.lines2

[17]:
line_id wavelength f_ul f_lu nu B_lu B_ul A_ul
atomic_number ion_number level_number_lower level_number_upper
3 0 21 67 1823 16404.775425 0.000503 0.000252 1.827471e+14 6.933393e+07 1.386679e+08 1.247877e+04
28 67 1923 27591.968635 0.001349 0.000674 1.086521e+14 3.124340e+08 6.248679e+08 1.181808e+04
37 67 2001 43823.900517 0.002767 0.001383 6.840844e+13 1.017857e+09 2.035713e+09 9.609265e+03
44 67 2052 67909.408678 0.006208 0.003104 4.414594e+13 3.539203e+09 7.078406e+09 8.979504e+03
51 67 2107 105557.600728 0.011721 0.005861 2.840084e+13 1.038640e+10 2.077280e+10 7.016705e+03
... ... ... ... ... ... ... ... ... ... ... ...
2 1 11 21 533410 10126.280000 0.593500 0.890250 2.960539e+14 1.513552e+11 1.009035e+11 3.860674e+07
13 21 533412 10126.505000 0.042400 0.042400 2.960473e+14 7.208767e+09 7.208767e+09 2.757966e+06
22 533413 10126.440000 0.636000 0.848000 2.960492e+14 1.441744e+11 1.081308e+11 4.137002e+07
14 23 533414 10126.440000 1.009500 1.346000 2.960492e+14 2.288429e+11 1.716322e+11 6.566515e+07
15 24 533415 10126.537000 1.047000 1.308750 2.960464e+14 2.225119e+11 1.780095e+11 6.810312e+07

271741 rows × 8 columns

Finally, open HDF files can be closed.

[18]:

atc.teardown()