Changelog

release-2025.10.12 (2025/10/11 21:44)

• 3324 Pre-release 2025.10.12 (3324) (@tardis-bot)

• 3314 Post Release Fix (3314) (@atharva-2001)

• 3322 Remove duplicate OpacityStateNumba class (3322) (@connor-mcclellan)

• 3315 append dummy index to references and fix docs (3315) (@jvshields)

• 3313 Post Release Items 22 Sept (3313) (@atharva-2001)

• 3277 Viz modules from_workflow tests (3277) (@atharva-2001)

• 3308 fix formal_integral_cuda references and test (3308) (@jvshields)

release-2025.09.21 (2025/09/20 22:03)

• 3312 Pre-release 2025.09.21 (3312) (@tardis-bot)

• 3309 Fix macroatom docs break (3309) (@jvshields)

• 3253 Speedup and implement new macroatom (3253) (@jvshields)

• 3265 Refactor NumbaFormalIntegral (3265) (@hmperk18)

• 3302 Zenodo Fixes 2 (3302) (@atharva-2001)

• 3276 Refactor Monte Carlo transport and interaction handling (3276) (@wkerzendorf)

• 3301 Post-release 2025.09.14 (3301) (@tardis-bot)

release-2025.09.14 (2025/09/12 09:22)

• 3299 Zenodo fixes (3299) (@atharva-2001)

• 3285 Equilibrium plasma regression data tests (3285) (@andrewfullard)

• 3250 Test the Cuda Formal Integral (3250) (@hmperk18)

• 3121 Heating and cooling rates (3121) (@andrewfullard)

• 3282 Implement downbranch into new macroatom. (3282) (@jvshields)

• 3288 Cuda Tests (3288) (@atharva-2001)

• 3291 Post-release 2025.09.07 (3291) (@tardis-bot)

release-2025.09.07 (2025/09/05 09:34)

• 3269 Use lockfiles from TARDIS instead of from TARDISBase (3269) (@atharva-2001)

• 3274 Short Term Fix for LFS Space Issues (3274) (@atharva-2001)

• 3280 Switch to stable sort (3280) (@jvshields)

• 3281 Update Python to 3.13 in pyproject.toml (3281) (@atharva-2001)

• 3223 Standardize sorting with a global (3223) (@jvshields)

• 3270 Docs missing files (3270) (@atharva-2001)

• 3275 Post-release 2025.08.31 (3275) (@tardis-bot)

release-2025.08.31 (2025/08/28 13:12)

• 3257 Revise dependencies in README (3257) (@andrewfullard)

• 3267 Ignore Test Files in Code Coverage (3267) (@riddhigangbhoj)

• 3273 Refactor packet source structure (3273) (@wkerzendorf)

• 3227 Clean FormalIntegralSolver (3227) (@wkerzendorf)

• 3266 Restructure/mc subpackage packets (3266) (@wkerzendorf)

• 3264 Refactor opacity state handling and imports (3264) (@wkerzendorf)

• 3248 Panel Docs Fix (3248) (@atharva-2001)

• 3242 Bump actions/checkout from 4 to 5 (3242) (@dependabot[bot])

• 3241 Bump softprops/action-gh-release from 1 to 2 (3241) (@dependabot[bot])

• 3247 docstr coverage ignore tests (3247) (@atharva-2001)

• 3252 Compare Regdata Bugfixes (3252) (@atharva-2001)

• 3254 Post-release 2025.08.24 (3254) (@tardis-bot)

release-2025.08.24 (2025/08/19 12:33)

• 3249 Fix default interpolate_shells in Formal Integral (3249) (@hmperk18)

• 3229 --no-deps installation of optional dependencies and compare regdata workflow bugfixes (3229) (@atharva-2001)

• 3070 Ionization calculations (3070) (@andrewfullard)

• 3239 Post-release 2025.08.17 (3239) (@tardis-bot)

release-2025.08.17 (2025/08/13 15:47)

• 3219 Apply diatixis across the docs (3219) (@hmperk18)

• 3237 Bump actions/download-artifact from 4 to 5 (3237) (@dependabot[bot])

• 3238 Bump codecov/codecov-action from 4 to 5 (3238) (@dependabot[bot])

• 3236 Bump juliangruber/read-file-action from 1.0.0 to 1.1.7 (3236) (@dependabot[bot])

• 3233 Skip continuum tests (3233) (@andrewfullard)

• 3200 3131: solved Docs Template contains fork reference (3200) (@jhalakbhandari)

• 3123 Fix logger widget vscode scrolling (3123) (@atharva-2001)

• 3186 Add Dependabot for GitHub Actions Updates (3186) (@atharva-2001)

• 3194 Updated readme (3194) (@Knights-Templars)

• 3224 Refactor FormalIntegral(s) into solver (3224) (@hmperk18)

• 3050 Tests for workflows: Simple, Standard, and Inner Velocity Solver (3050) (@erinvisser)

• 3221 Revert “Restructure/transport solver v1” (3221) (@andrewfullard)

• 3215 make smaller he regressions data (3215) (@wkerzendorf)

• 3177 Refactor make_source_function into solver (3177) (@hmperk18)

• 3218 Restructure/transport solver v1 (3218) (@wkerzendorf)

• 3216 Post-release 2025.08.03 (3216) (@tardis-bot)

release-2025.08.03 (2025/07/31 14:08)

• 3212 fix more \AA warnings (3212) (@hmperk18)

• 2976 Restructure/gamma rays code1 (2976) (@wkerzendorf)

• 3211 Post-release 2025.07.27 (3211) (@tardis-bot)

release-2025.07.27 (2025/07/25 20:22)

• 3145 Remove SDEC encoding and fix colors (3145) (@abhinavohri)

• 3209 fix \AA warnings with raw string (3209) (@hmperk18)

• 3197 Remove qgridnext (3197) (@atharva-2001)

• 3208 Return formal integral to v_inner_solver_workflow.ipynb (3208) (@hmperk18)

• 3205 Add the non-numba opacity_state as a attribute of the simulation object (3205) (@DeerWhale)

• 3201 Post-release 2025.07.20 (3201) (@tardis-bot)

release-2025.07.20 (2025/07/17 09:22)

• 3198 add from workflow method to sdec and liv plot (3198) (@abhinavohri)

• 3176 Relativity BugFix [2] (3176) (@atharva-2001)

• 3192 Post-release 2025.07.15 (3192) (@tardis-bot)

• 3185 Post Release Fixes (3185) (@atharva-2001)

• 3181 Remove duplicates throughout formal integral (3181) (@hmperk18)

release-2025.07.13 (2025/07/10 15:13)

• 3184 Fix missing hyperlink for the tutorial notebooks in doc (3184) (@DeerWhale)

• 3163 Externalize macro atom logic (3163) (@jvshields)

• 3173 Add back lockfiles for reference (3173) (@atharva-2001)

• 3182 Refactor code to use pathlib for file path handling across multiple m… (3182) (@wkerzendorf)

• 3172 make formal integral-related items one module (3172) (@hmperk18)

• 3168 Installation Fixes in tests.yml and compare-regdata.yml (3168) (@atharva-2001)

• 3146 use pytest.importorskip on optional visualization dependencies (3146) (@hmperk18)

• 3032 Remove test from init.py (3032) (@pllim)

• 2947 add a test to line info (2947) (@karthik11135)

• 3166 mention the intel lockfile in installation docs (3166) (@hmperk18)

• 3159 Fixes file name in research papers workflow (3159) (@abhinavohri)

• 3167 Update the energy unit in atomic data description doc (3167) (@DeerWhale)

• 3149 Refactor imports to use HDFWriterMixin from hdf_writer_mixin module (3149) (@wkerzendorf)

• 3094 Update workflow to use comparison tools from tardisbase repository (3094) (@riddhigangbhoj)

• 3165 add andreas alias (3165) (@jvshields)

• 3083 Add SNEC input profile and xg file readers (3083) (@wkerzendorf)

• 3116 Macroatom restructure (3116) (@jvshields)

• 3160 Fix failing tests in release workflow (3160) (@abhinavohri)

• 3152 add plugin to display writing symbol and not skip test (3152) (@jvshields)

• 3157 Tests/validator (3157) (@wkerzendorf)

• 3148 Update config validator to use Draft 7 and improve schema registry handling (3148) (@wkerzendorf)

• 2866 Gamma decay energy documentation (2866) (@CePowers)

• 3092 Add assertion check in v_inner_solver workflow (3092) (@DeerWhale)

• 3142 TARDIS-research-papers 2025.06.17 (3142) (@tardis-bot)

• 3143 Setup env typo fix (3143) (@atharva-2001)

• 3101 Regression data from tardisbase (3101) (@atharva-2001)

• 3132 Fix build-docs (3132) (@atharva-2001)

• 3124 Use lock files from tardisbase (3124) (@atharva-2001)

• 3098 Logging in vinner solver and catching nans (3098) (@wkerzendorf)

• 3127 fixed the calculate number_density_cells in some functions (3127) (@wkerzendorf)

• 3122 Fix tardis.__version__ and version to HDF metadata (3122) (@atharva-2001)

• 3100 Use lineid plot to make spectral line markers (3100) (@hmperk18)

• 2992 Remove atomic data from composition. (2992) (@wkerzendorf)

• 2974 Refactor isotope mass fraction handling and configuration (2974) (@wkerzendorf)

• 3119 Install qgridnext and lineid plot via pyproject.toml (3119) (@atharva-2001)

• 3118 Complete job names for status checks (3118) (@atharva-2001)

release-2025.06.08 (2025/06/03 16:57)

• 3115 update the vinnerworkflow with to_hdf capability (3115) (@wkerzendorf)

• 3085 Updated sdec plot notebook (3085) (@abhinavohri)

• 3099 Fix incorrect function call in livplot (3099) (@abhinavohri)

• 3090 macro atom interaction rename (3090) (@jvshields)

• 3112 Correct atomic data path and checksum (3112) (@andrewfullard)

• 3110 Compare regdata typo fix (3110) (@atharva-2001)

• 3107 Post-release 2025.06.01 (3107) (@tardis-bot)

release-2025.06.01 (2025/05/30 16:13)

• 2896 Implementation of refactored rates in plasma (2896) (@andrewfullard)

• 3096 add benchmarks link to readme (3096) (@karthik11135)

• 3069 Cleanup sdec and liv plotter classes (3069) (@abhinavohri)

• 3095 Post-release 2025.05.25 (3095) (@tardis-bot)

release-2025.05.25 (2025/05/22 08:34)

• 3053 fix flake8-bugbear (3053) (@Sonu0305)

• 3086 Fix tardis version fallback (3086) (@abhinavohri)

• 3084 Post-release 2025.05.18 (3084) (@tardis-bot)

release-2025.05.18 (2025/05/12 12:31)

• 3075 Build docs issues fixes (3075) (@atharva-2001)

• 3074 Post-release 2025.05.11 (3074) (@tardis-bot)

release-2025.05.11 (2025/05/06 14:03)

• 2998 Created a workflow for TARDIS High energy (2998) (@Knights-Templars)

• 3067 Cleanup rpacket plotter class (3067) (@abhinavohri)

• 3029 add convergence notebook to analysing tardis outputs section (3029) (@abhinavohri)

• 3064 Compare Regression Data Workflow Typo Fix (3064) (@atharva-2001)

• 3066 Post-release 2025.05.04 (3066) (@tardis-bot)

release-2025.05.04 (2025/04/29 10:52)

• 3003 Add Rpacket plot notebook under analysing tardis outputs (3003) (@abhinavohri)

• 2928 Cleanup SDECPlotter and LIVPlotter class (2928) (@abhinavohri)

• 3058 Docs build and logger widget fixes (3058) (@atharva-2001)

• 3060 Post-release 2025.04.27 (3060) (@tardis-bot)

release-2025.04.27 (2025/04/23 13:15)

• 2846 Ruff tardis/visualization (2846) (@atharva-2001)

• 3051 Rewrote .rst generating functions with pathlib logic for simplification (3051) (@erinvisser)

• 3008 Fix labels accross spectral notebooks (3008) (@abhinavohri)

• 3055 Progress Bar Fixes (3055) (@atharva-2001)

• 3057 Rename analzing tardis outputs to analyzing TARDIS (3057) (@abhinavohri)

• 3056 Post-release 2025.04.20 (3056) (@tardis-bot)

release-2025.04.20 (2025/04/16 13:29)

• 3043 Add workflows to documentation (3043) (@erinvisser)

• 3041 Build Docs and Other Workflow Fixes (3041) (@atharva-2001)

• 2977 Fixture fixes (2977) (@atharva-2001)

• 3049 Fixes the ruff toml issues (3049) (@Sonu0305)

• 2872 Logger Widget Panel (2872) (@atharva-2001)

• 2876 Gammaray opacity documentation (2876) (@CePowers)

• 2983 v_inner convergence plots in docs (2983) (@erinvisser)

• 3012 Changed name from TARDIS-gamma to TARDIS-HE to match the paper. (3012) (@CePowers)

• 2973 Io artis reader (2973) (@wkerzendorf)

• 3013 Upgrade dependencies by resolving TARDIS environment (3013) (@atharva-2001)

• 2985 Add liv plot notebook to the analyzing tardis outputs section (2985) (@abhinavohri)

• 3036 Post-release 2025.03.30 (3036) (@tardis-bot)

release-2025.03.30 (2025/03/25 09:41)

• 3030 BugFix: Utility workflow and Clean Docs workflow (3030) (@atharva-2001)

• 3025 Remove Deprecated Astropy TestRunner (3025) (@atharva-2001)

• 3002 Flatten macroatom (3002) (@jvshields)

• 3028 Post-release 2025.03.23 (3028) (@tardis-bot)

release-2025.03.23 (2025/03/21 13:34)

• 3016 Workflow Label Pipeline and Fixes (3016) (@atharva-2001)

• 3022 add final integrated tau property to v_inner workflow (3022) (@jvshields)

• 2981 v_inner_solver store plasma state fxn (2981) (@erinvisser)

• 3019 Post-release 2025.03.19 (3019) (@tardis-bot)

release-2025.03.19 (2025/03/17 17:44)

• 3014 Post-release 2025.03.16 (3014) (@tardis-bot)

release-2025.03.16 (2025/03/11 09:19)

• 2968 Add sdec visualisation notebook (2968) (@abhinavohri)

• 3001 Document LFS-cache workflow and the setup-lfs action (3001) (@atharva-2001)

• 3004 Fix post release workflow by pinning python version to 3.12 (3004) (@abhinavohri)

• 3000 Send a dispatch to tardis website to update credits (3000) (@abhinavohri)

release-2025.03.09 (2025/03/06 16:05)

• 2984 Fix init bug for: line_interaction_type=scatter (2984) (@roee2000)

• 2969 Replace with appropriate .loc or .iloc method. (2969) (@rohit2p)

• 2982 [Docs] : updated the pytest arg from –regression-data to –tardis-regression-data (2982) (@rudrakshnalbalwar)

• 2988 Remove plasma object going into the macroatom (2988) (@jvshields)

• 2999 Trigger LFS-cache generation from regression data repository (2999) (@atharva-2001)

• 2993 Regression data comparison workflow (2993) (@atharva-2001)

release-2025.03.02 (2025/02/26 13:13)

• 2793 Gamma ray spectra dep (2793) (@Knights-Templars)

• 2935 Numpy v2 Upgrade PR 2 (2935) (@atharva-2001)

release-2025.02.23 (2025/02/21 15:11)

• 2962 Updated packet_source to fix bug with BlackBodySimpleSource.create_pa… (2962) (@nvieira-astro)

• 2980 Move required images in the analyzing tardis outputs directory (2980) (@abhinavohri)

• 2967 Move visualization section to analysing tardis output (2967) (@abhinavohri)

• 2975 Fail LFS pull if label not present (2975) (@atharva-2001)

release-2025.02.16 (2025/02/10 11:20)

• 2951 Ensures consistency across codebase to ensure consistent codestyle (2951) (@Sonu0305)

• 2956 Fixes the codestyle for Invalid Class Names (2956) (@Sonu0305)

release-2025.02.09 (2025/02/05 12:21)

• 2966 Fix LFS sparse checkout (2966) (@atharva-2001)

• 2963 updated converged status to self.converged throughout workflow (2963) (@erinvisser)

• 2965 Disallow Merge Refs from Creating Cache (2965) (@atharva-2001)

release-2025.02.02 (2025/01/27 11:40)

• 2954 LFS Fixes (2954) (@atharva-2001)

• 2958 Post-release 2025.01.26 (2958) (@tardis-bot)

release-2025.01.26 (2025/01/24 14:54)

• 2932 opacity_state_to_numba -> to_numba and moved to as a method of class OpacityState (2932) (@Sonu0305)

• 2897 Ionization rates (2897) (@andrewfullard)

• 2938 Fixes spelling errors in the codebase (2938) (@Sonu0305)

• 2952 Post-release 2025.01.19 (2952) (@tardis-bot)

release-2025.01.19 (2025/01/14 16:54)

• 2800 V inner formal integral (2800) (@Rodot-)

• 2946 Fixes indentation for tracking key to be nested under montecarlo key in YAML (2946) (@Sonu0305)

• 2907 Add missing init.py file in opacitites module (2907) (@abhinavohri)

• 2922 Fixed data download link mentioned under Quickstart for TARDIS (2922) (@Sonu0305)

• 2908 Ignore ipynb files in codespell (2908) (@abhinavohri)

• 2943 Post-release 2025.01.12 (2943) (@tardis-bot)

release-2025.01.12 (2025/01/09 03:46)

• 2925 give tag in git cliff command (2925) (@abhinavohri)

• 2923 Moves non-physical input check outsode I/O module (2923) (@Sonu0305)

• 2924 Post-release 2025.01.05 (2924) (@tardis-bot)

release-2025.01.05 (2024/12/30 01:37)

• 2915 Post-release 2024.12.29 (2915) (@tardis-bot)

release-2024.12.29 (2024/12/23 04:39)

• 2909 Post-release 2024.12.22 (2909) (@tardis-bot)

release-2024.12.22 (2024/12/16 10:05)

• 2901 Update test docs (2901) (@abhinavohri)

• 2905 Post-release 2024.12.15 (2905) (@tardis-bot)

release-2024.12.15 (2024/12/09 10:05)

• 2902 Fix Benchmarks Workflow (2902) (@atharva-2001)

• 2900 Post-release 2024.12.08 (2900) (@tardis-bot)

release-2024.12.08 (2024/12/04 12:24)

• 2898 Remove “labeled” from tests workflow triggers (2898) (@abhinavohri)

• 2865 Rates matrix solver (2865) (@andrewfullard)

• 2874 Remove tau sobolevs from plasma (2874) (@andrewfullard)

• 2894 Fixing label issue in convergence plots (see Issue #2446) (2894) (@jamesgillanders)

• 2895 Post-release 2024.12.01 (2895) (@tardis-bot)

release-2024.12.01 (2024/11/25 10:00)

• 2889 Add token to release workflow (2889) (@abhinavohri)

• 2890 Update badge for doc string coverage (2890) (@abhinavohri)

• 2891 Revert “Fix the issue where the docs are built twice when there are no changes” (2891) (@abhinavohri)

• 2888 Post-release 2024.11.25 (2888) (@tardis-bot)

release-2024.11.24 (2024/11/20 12:32)

• 2887 Post-release 2024.11.20 (2887) (@tardis-bot)

release-2024.11.20 (2024/11/20 10:01)

• 2886 Release Fixes (2886) (@atharva-2001)

• 2884 Release Fixes (2884) (@atharva-2001)

• 2870 Replace M_PI=np.arccos(-1) with M_PI=np.pi (2870) (@Akash265)

• 2873 Post-release 2024.11.11 (2873) (@tardis-bot)

• 2844 Remove integration tests (2844) (@abhinavohri)

• 2871 Fix the issue where the docs are built twice when there are no changes (2871) (@abhinavohri)

release-2024.11.11 (2024/11/04 10:14)

• 2858 Gamma ray documentation introduction (2858) (@CePowers)

• 2730 Simulation solver workflow (2730) (@andrewfullard)

• 2860 Cleanup codestyle workflow (2860) (@abhinavohri)

• 2842 Update docs with regression data (2842) (@abhinavohri)

• 2746 Remove rpacket_tracking flag from tests workflow (2746) (@atharva-2001)

• 2843 Close regression data files (2843) (@atharva-2001)

• 2848 Ruff tardis/spectrum (2848) (@atharva-2001)

• 2849 Ruff root files (2849) (@atharva-2001)

• 2862 Fix release 2024-10-14 CHANGELOG (2862) (@atharva-2001)

• 2861 Replace setup_lfs action with single file checkout (2861) (@atharva-2001)

• 2857 Post-release 2024.10.14 (2857) (@tardis-bot)

• 2770 Restructure/detailed balance foundation (2770) (@wkerzendorf)

• 2833 Pytest Warnings Fix - 2 (2833) (@abhinavohri)

• 2851 Fix codespell (2851) (@abhinavohri)

• 2854 Remove black from environment yml and lock files. (2854) (@abhinavohri)

• 2855 Remove black from docs and update with ruff (2855) (@abhinavohri)

• 2853 Remove black from codestyle workflow (2853) (@abhinavohri)

release-2024.10.14 (2024/10/08 12:37)

• 2824 fix typo for word boundaries in doc (2824) (@RyanGroneck)

• 2847 Ruff on tardis/simulation (2847) (@atharva-2001)

• 2845 Ruff tardis/plasma (2845) (@atharva-2001)

• 2838 Add zenodo badge in the release summary notes (2838) (@abhinavohri)

• 2836 New Gammaray Packet Initialization Documentation (2836) (@CePowers)

• 2839 Fix mambaforge issue in STARDIS tests (2839) (@atharva-2001)

• 2840 Fix benchmarks 2 (2840) (@atharva-2001)

• 2841 Fix navigation sidebar on mobile (2841) (@abhinavohri)

• 2835 Pre Release Zenodo Not Found (2835) (@atharva-2001)

• 2834 Fixes qgridnext import error in tests (2834) (@andrewfullard)

• 2816 Release Modifications (2816) (@atharva-2001)

• 2831 Failing benchmarks fix (2831) (@atharva-2001)

• 2823 Handle Test warnings (2823) (@abhinavohri)

• 2830 Fix for #2820 (2830) (@atharva-2001)

• 2832 Failing Docs Fix (2832) (@atharva-2001)

• 2829 Ruff tardis/transport (2829) (@atharva-2001)

• 2828 Ruff tardis/model (2828) (@atharva-2001)

• 2827 Ruff tardis/io (2827) (@atharva-2001)

• 2826 Ruff Autofixes (tardis/analysis) (2826) (@atharva-2001)

• 2819 Handling for qgridnext installation (2819) (@andrewfullard)

• 2811 Update line_interaction_in_r after moving the packet (2811) (@Sumit112192)

• 2808 Migrate to Regression Data Completely (2808) (@atharva-2001)

• 2814 Move to qgridnext (2814) (@sarthak-dv)

• 2807 Add codespell workflow (2807) (@abhinavohri)

• 2810 Post-release 2024.08.25 (2810) (@tardis-bot)

release-2024.08.25 (2024/08/24 20:44)

• 2809 Pre-release 2024.08.25 (2809) (@tardis-bot)

• 2795 Doc changes for RPacketTracker (2795) (@Sumit112192)

• 2806 Add molecular data exposure to tardis atom data (2806) (@jvshields)

• 2805 TARDIS Full Formal Integral Regression Tests (2805) (@atharva-2001)

• 2723 LIV Plot Tests (2723) (@sarthak-dv)

• 2804 Simulation Regression Tests (2804) (@atharva-2001)

• 2783 Simple Atom data refactor (2783) (@andrewfullard)

• 2794 Update research papers notebook and update the docs (2794) (@abhinavohri)

• 2798 Remove deprecated setup.py (2798) (@abhinavohri)

• 2803 Post-release 2024.08.18 (2803) (@tardis-bot)

release-2024.08.18 (2024/08/17 20:45)

• 2802 Pre-release 2024.08.18 (2802) (@tardis-bot)

• 2788 Update benchmark base (2788) (@officialasishkumar)

• 2785 Convert SDEC tests to Regression Data (2785) (@atharva-2001)

• 2799 Remove syrupy section from docs (2799) (@abhinavohri)

• 2801 Fix file formats (2801) (@andrewfullard)

• 2784 Add Packet Wavelength filter to LIV Plot (2784) (@sarthak-dv)

• 2786 Macroatom restructure (2786) (@Rodot-)

• 2748 [restructure/plasma] Cleanup plasma assembly (2748) (@wkerzendorf)

• 2736 Track boundary interaction (2736) (@Sumit112192)

• 2782 Change parameters in benchmarks (2782) (@officialasishkumar)

• 2790 Post-release 2024.08.12 (2790) (@tardis-bot)

release-2024.08.12 (2024/08/12 08:57)

• 2789 Pre-release 2024.08.11 (2789) (@tardis-bot)

• 2759 Minor refactor of the spectrum solver (2759) (@andrewfullard)

• 2787 some spelling fixes in the docs (2787) (@zingale)

• 2778 Ruff Fix 2 (2778) (@atharva-2001)

• 2781 Update docstrings of Tracker tests (2781) (@Sumit112192)

• 2773 Opacity state restructure (2773) (@Rodot-)

• 2776 Post-release 2024.08.04 (2776) (@tardis-bot)

release-2024.08.04 (2024/08/03 20:49)

• 2775 Pre-release 2024.08.04 (2775) (@tardis-bot)

• 2749 Cache benchmark functions (2749) (@officialasishkumar)

• 2762 Fix ruff comments issue (2762) (@atharva-2001)

• 2767 Release Pipeline Fixes (2767) (@atharva-2001)

• 2758 Opacity state slice (2758) (@Rodot-)

• 2771 Add Extend Array Function (2771) (@Sumit112192)

• 2761 Donot run docs, benchmarks and stardis tests on draft PRs. (2761) (@abhinavohri)

• 2720 Benchmark run_tardis with track_rpacket enabled (2720) (@Sumit112192)

• 2675 [Restructure/plasma] estimator cleanup (2675) (@wkerzendorf)

• 2670 Changed file path (2670) (@Knights-Templars)

• 2763 Add benchmark documentation (2763) (@officialasishkumar)

• 2719 Restructure Trackers (2719) (@Sumit112192)

• 2745 Address pytest warnings (2745) (@atharva-2001)

• 2753 Run stardis tests on Tardis PRs (2753) (@abhinavohri)

• 2754 Ruff Workflow Fix (2754) (@atharva-2001)

• 2751 Post-release 2024.07.28 (2751) (@tardis-bot)

release-2024.07.28 (2024/07/27 20:43)

• 2750 Pre-release 2024.07.28 (2750) (@tardis-bot)

• 2718 Weighted Packet Sampler (2718) (@Rodot-)

• 2747 Commit hash of PR HEAD not found fix (2747) (@officialasishkumar)

• 2740 Adds number_of_packets property to the packet collection (2740) (@andrewfullard)

• 2735 Add solve method to SpectrumSolver (2735) (@andrewfullard)

• 2660 Add ruff workflow (2660) (@atharva-2001)

• 2744 fix docs build by removing the parse_simulation_state function from the tardis.io.model module and moving it to the tardis.io.model.parse_simulation_state module (2744) (@wkerzendorf)

• 2742 Fix Codecov (2742) (@atharva-2001)

• 2664 [Restructure/plasma] Refactor the simulation state initialization (2664) (@wkerzendorf)

• 2734 Moves time explosion off the transport solver to the transport state (2734) (@andrewfullard)

• 2722 Refactor benchmarks (2722) (@officialasishkumar)

• 2613 [Restructure/plasma] restructure the Radiationfields (2613) (@wkerzendorf)

• 2731 Fast formal integral (2731) (@Rodot-)

• 2725 Fast Formal Integral (2725) (@Rodot-)

• 2728 Fix Failing docstr-cov Badge (2728) (@atharva-2001)

• 2727 Fix Cache Issues (2727) (@atharva-2001)

• 2726 Codecov fix (2726) (@atharva-2001)

• 2689 Spectrum refactor (2689) (@andrewfullard)

• 2721 Pre Release Workflow Fix (2721) (@atharva-2001)

• 2716 Implement last interaction tracker (2716) (@Sumit112192)

• 2717 Remove parameters and speed up benchmarks (2717) (@officialasishkumar)

• 2709 Add google analytics key to tardis docs (2709) (@abhinavohri)

• 2711 Shifting git cliff changelog generator configuration to pyproject.toml (2711) (@abhinavohri)

• 2713 Move pip tests to release workflow (2713) (@atharva-2001)

• 2699 Separate Continuum Tests (2699) (@atharva-2001)

• 2677 Last Interaction Velocity (2677) (@sarthak-dv)

• 2705 Montecarlo globals (limited scope) (2705) (@andrewfullard)

• 2703 Pre Release Fix (2703) (@atharva-2001)

• 2704 Shifting update refdata workflow to archive folder (2704) (@abhinavohri)

• 2702 Benchmark fix for github actions (2702) (@officialasishkumar)

• 2640 Refactor and add more benchmarks for montecarlo (2640) (@officialasishkumar)

• 2698 Move setup environment steps to composite action (2698) (@atharva-2001)

• 2696 Adds continuum marker to pytest and continuum tests (2696) (@andrewfullard)

• 2667 Add arm64 conda-lock file (2667) (@atharva-2001)

• 2695 Logging - avoid the zero division warning (2695) (@DeerWhale)

• 2694 Change setup.cfg to pyproject.toml (2694) (@abhinavohri)

• 2119 adding RPacketPlotter to TARDIS (2119) (@jayantbhakar)

• 2693 Post-release 2024.07.07 (2693) (@tardis-bot)

release-2024.07.07 (2024/07/06 20:49)

• 2692 Pre-release 2024.07.07 (2692) (@tardis-bot)

• 2656 fix benchmark action (2656) (@officialasishkumar)

• 2684 Fix hdf path for time_of_simulation in sdec plot (2684) (@sarthak-dv)

• 2652 I/O Refactoring (2652) (@andrewfullard)

• 2666 Add Ruff to TARDIS Environment (2666) (@atharva-2001)

• 2629 Updating github changes command in post release workflow (changelog fix) (2629) (@abhinavohri)

• 2665 Fix benchmarks errors (2665) (@abhinavohri)

• 2669 Updating “Environment update” section in tardis docs (2669) (@abhinavohri)

• 2668 Adding analytics to tardis documentation (2668) (@abhinavohri)

• 2609 [Restructure/plasma] Initial Opacities Refactor (2609) (@wkerzendorf)

• 2659 Update Ruff Config (2659) (@atharva-2001)

release-2024.06.09 (2024/06/08 20:52)

• 2649 Pre-release 2024.06.09 (2649) (@tardis-bot)

• 2647 Move rpacket_trackers_to_dataframe function to packet_trackers.py file (2647) (@Sumit112192)

• 2608 Refactoring of Monte Carlo transport (2608) (@andrewfullard)

• 2518 Convergence restructure (2518) (@andrewfullard)

• 2641 Update Lock Files 2024 (2641) (@atharva-2001)

• 2638 Move RPacketTracker class to a new file packet_trackers.py (2638) (@Sumit112192)

• 2630 Added HDF documentation. (2630) (@airvzxf)

• 2573 Bugfix: Added a conditional statement and changed the error type that was being handled in tardis.io.model_reader.read_uniform_abundances. (2573) (@KC210404)

• 2631 Edit Generation Tests (2631) (@atharva-2001)

release-2024.06.03 (2024/06/03 08:25)

• 2639 Pre-release 2024.06.02 (2639) (@tardis-bot)

• 2628 Updating actions to their latest version (2628) (@abhinavohri)

• 2633 Fixed the imported modules. (2633) (@airvzxf)

• 2632 Removing checkout to the tardis repo step from setup lfs workflow (2632) (@abhinavohri)

release-2024.05.28 (2024/05/28 06:24)

• 2627 Pre-release 2024.05.26 (2627) (@tardis-bot)

• 2624 Updating the docs to use local atomic data (2624) (@abhinavohri)

• 2607 Remove DokuWiki Code (2607) (@atharva-2001)

• 2584 PacketSource should contain .to_hdf() method (2584) (@atharva-2001)

• 2603 NumberDensity as Input to plasma (2603) (@wkerzendorf)

• 2623 Revert “Updating the worfklow to use atomic data from cache rather th… (2623) (@abhinavohri)

• 2621 Fixing PR checkout in build docs job (2621) (@abhinavohri)

• 2618 Fixing build docs yaml to detect branches on forks (2618) (@abhinavohri)

• 2619 Fixed #2564 by bringing back the image from a previous commit (2619) (@Sumit112192)

• 2611 Converted the reference data to regression in test TARDIS full (2611) (@airvzxf)

release-2024.05.12 (2024/05/11 21:05)

• 2614 Pre-release 2024.05.12 (2614) (@tardis-bot)

• 2587 Trigger docs only when something inside the docs folder changed (2587) (@abhinavohri)

• 2560 Bug t radiative (2560) (@Sumit112192)

• 2610 LFS submodule error fix (2610) (@atharva-2001)

• 2605 Move montecarlo to transport and flatten montecarlo numba (2605) (@andrewfullard)

• 2565 GSoC 2024 | Benchmark | First objective | Israel Roldan (2565) (@airvzxf)

release-2024.05.05 (2024/05/04 20:56)

• 2606 Pre-release 2024.05.05 (2606) (@tardis-bot)

• 2561 Documentation typo (2561) (@Sumit112192)

• 2598 Only Run Benchmarks Workflow When Owner is tardis-sn (2598) (@atharva-2001)

• 2589 Solve Duplicate Code in GitHub Action Workflows (2589) (@atharva-2001)

• 2528 Convergence plot correction: Use step plots (2528) (@sarthak-dv)

• 2546 Gamma-ray packet source refactor (2546) (@andrewfullard)

• 2577 Abundance widget bug fix (2577) (@Sumit112192)

• 2597 Modify Update Refdata to Push Regression Data Changes (2597) (@atharva-2001)

• 2595 Fixes IntegrationError causing refdata generation failure (2595) (@andrewfullard)

• 2562 Reference Data Generation Fixes (2562) (@atharva-2001)

release-2024.04.21 (2024/04/20 20:45)

• 2593 Pre-release 2024.04.21 (2593) (@tardis-bot)

• 2525 Montecarlo configuration refactor (2525) (@andrewfullard)

• 2578 Updating embedded links in docs with new file names “tutorial_” and “how_to_” (2578) (@erinvisser)

• 2509 Precommit (2509) (@ntchen)

• 2580 Removing flake8 job. (2580) (@abhinavohri)

release-2024.04.14 (2024/04/13 20:54)

• 2583 Pre-release 2024.04.14 (2583) (@tardis-bot)

• 2328 Grotrian diagram IPyWidget functionality (2328) (@AyushiDaksh)

release-2024.04.08 (2024/04/08 09:41)

• 2576 Pre-release 2024.04.07 (2576) (@tardis-bot)

• 2563 Recategorizing tutorials as how-to guides to follow diataxis structure (2563) (@erinvisser)

• 2542 Consistent units in packet source (2542) (@andrewfullard)

• 2574 Updated helium nlte page in docs with in-text citation (2574) (@erinvisser)

• 2552 Multiindex dataframe (2552) (@Knights-Templars)

release-2024.04.01 (2024/04/01 10:03)

• 2566 Pre-release 2024.03.31 (2566) (@tardis-bot)

• 2349 Implemented Model Reader for CMFGen example (Also refactored Stella Reader) (2349) (@)

• 2554 Remove Azure Compare Refdata Pipeline (2554) (@atharva-2001)

• 2555 corrected blackbody luminosity density equation (2555) (@CePowers)

• 2556 fixing typos, including pytest issue (2556) (@erinvisser)

• 2535 Path.replace bug (2535) (@Sumit112192)

• 2553 Fix Cache IDs in Tests Workflow (2553) (@atharva-2001)

release-2024.03.18 (2024/03/18 09:58)

• 2551 Pre-release 2024.03.17 (2551) (@tardis-bot)

• 2253 Fix for widgets displaying code in commandline (2253) (@shreyas3156)

• 2529 PR to separate main gamma ray loop (2529) (@Knights-Templars)

• 2541 Fix units for virtual packet properties in MonteCarloTransportState (2541) (@sarthak-dv)

• 2533 Fix broken URL in generating_widgets.ipynb (2533) (@sarthak-dv)

release-2024.03.11 (2024/03/11 09:31)

• 2536 Pre-release 2024.03.10 (2536) (@tardis-bot)

• 2522 prevent float overflow when calculating He I population (2522) (@DeerWhale)

• 2524 Update index.rst (2524) (@wkerzendorf)

release-2024.02.19 (2024/02/19 09:21)

• 2521 Pre-release 2024.02.18 (2521) (@tardis-bot)

• 2520 update the lock file link in doc (2520) (@DeerWhale)

release-2024.02.11 (2024/02/10 19:45)

• 2517 Pre-release 2024.02.11 (2517) (@tardis-bot)

• 2460 update installation documentation for tardis (2460) (@erinvisser)

• 2516 fixed the difference between the power of pi in code and function above (2516) (@erinvisser)

• 2504 Update number of shells in SimulationState (2504) (@DeerWhale)

• 2501 Fix/nlte ionization matrix (2501) (@wkerzendorf)

• 2512 Estimators restructure cleanup (2512) (@andrewfullard)

• 2492 Restructure/separate transport state (2492) (@wkerzendorf)

• 2506 Remove workflow file that installs TARDIS using conda (2506) (@atharva-2001)

• 2476 Restructure/transport solver (2476) (@wkerzendorf)

release-2024.01.14 (2024/01/14 10:26)

• 2503 Pre-release 2024.01.14 (2503) (@tardis-bot)

release-2024.01.08 (2024/01/08 09:37)

• 2502 Pre-release 2024.01.07 (2502) (@tardis-bot)

• 2473 A syrupy replacement (2473) (@wkerzendorf)

• 2474 Restructure radiation field (2474) (@wkerzendorf)

• 2455 Use Mamba Instead of Conda When Running Benchmarks (2455) (@atharva-2001)

• 2490 Fix viz sdec (2490) (@AlexHls)

• 2445 Restructure/abundance (2445) (@wkerzendorf)

• 2479 Check if atom data download exists (2479) (@wkerzendorf)

• 2448 Decay energy chain (2448) (@Knights-Templars)

• 2478 Add ruff rules and docs (2478) (@AlexHls)

• 2459 Update plasma configuration documentation (2459) (@AlexHls)

release-2023.11.26 (2023/11/26 10:41)

• 2477 Pre-release 2023.11.26 (2477) (@tardis-bot)

• 2471 Reading in decay radiation data in atom data (2471) (@Knights-Templars)

• 2470 Add astropy import guard (2470) (@AlexHls)

• 2413 Tests Plasma Using Syrupy (2413) (@atharva-2001)

release-2023.11.05 (2023/11/04 22:34)

• 2466 Pre-release 2023.11.05 (2466) (@tardis-bot)

• 2461 NLTE Ionization solver polish (2461) (@AlexHls)

• 2462 Update docstr-cov.yml to fix failing action (2462) (@andrewfullard)

• 2458 Enable nlte ionization as plasma component (2458) (@AlexHls)

• 2453 Fix bug in relativistic packet source (2453) (@chvogl)

• 2457 Add verbose assert to NLTE rate equation (2457) (@AlexHls)

release-2023.10.20 (2023/10/20 09:48)

• 2452 Pre-release 2023.10.20 (2452) (@tardis-bot)

• 2432 Remove lock file creation from pre release workflow (2432) (@atharva-2001)

• 2450 Add FAQ section to documentation (2450) (@AlexHls)

• 2422 restructure of geometry (2422) (@wkerzendorf)

• 2441 Change glob patterns in setup.cfg (2441) (@atharva-2001)

• 2447 Fix numba parallel issues (2447) (@AlexHls)

• 2443 Fix duplicate entries in continuum line list (2443) (@AlexHls)

• 2434 Added a function to calculate shell masses (2434) (@Knights-Templars)

• 2425 Modified how setup input energy takes isotope name. Earlier it was ga… (2425) (@Knights-Templars)

• 2428 add linelist exposure to atom data and reader, built on current (2428) (@jvshields)

• 2426 Disabled formal integral for continuum interaction (2426) (@AlexHls)

• 2424 Ignore tests in docstr coverage (2424) (@atharva-2001)

• 2421 rename simulation_state2 (2421) (@wkerzendorf)

• 2417 rename RadialModel1D to SimulationState (2417) (@wkerzendorf)

• 2415 In gamma ray code : Changed times to np.geomspace (2415) (@Knights-Templars)

• 2410 upgrading env in 2022 (2410) (@wkerzendorf)

release-2023.09.17 (2023/09/16 20:51)

• 2411 Pre-release 2023.09.17 (2411) (@tardis-bot)

• 2407 Allow Simulation Tests to Run Independently (2407) (@atharva-2001)

release-2023.09.10 (2023/09/09 22:43)

• 2408 Pre-release 2023.09.10 (2408) (@tardis-bot)

• 2288 Add documentation for LFS caching, The Bridge and Save Atomic Files Workflow (2288) (@atharva-2001)

release-2023.09.03 (2023/09/02 20:47)

• 2406 Pre-release 2023.09.03 (2406) (@tardis-bot)

• 2393 Restructure readers (2393) (@wkerzendorf)

• 2404 Pin Sphinx to <= 7.1 (2404) (@atharva-2001)

• 2403 Reading fully ionized species with species_string_to_tuple (2403) (@sonachitchyan)

• 2398 Disable Parallelization (2398) (@atharva-2001)

• 2401 asv run continue on error (2401) (@atharva-2001)

• 2399 Update documentation about the parallelization problem (2399) (@atharva-2001)

• 2400 Add __init__.py in radiation_field subpackage (2400) (@atharva-2001)

• 2396 Fix for Slack message (2396) (@epassaro)

release-2023.08.20 (2023/08/19 20:43)

• 2397 Pre-release 2023.08.20 (2397) (@tardis-bot)

• 2338 Test conda-forge package installation (2338) (@epassaro)

• 2224 Fix references and typos in documentation (2224) (@shreyas3156)

• 2385 Creating collisional excitation/deexcitation coefficient matrix for NLTE excitation treatment (2385) (@sonachitchyan)

• 2142 added documentation for using particular refdata files for unit testing (2142) (@jayantbhakar)

• 2395 Fixing the shape of the solution vector to be accurate in NLTE excitation treatment (2395) (@sonachitchyan)

• 2353 Benchmarks Comments and Atom Data Cache BugFix (2353) (@atharva-2001)

• 2386 Integrate density in state object (2386) (@wkerzendorf)

• 2392 Post-release 2023.08.13 (2392) (@tardis-bot)

release-2023.08.13 (2023/08/13 17:04)

• 2391 Pre-release 2023.08.13 (2391) (@tardis-bot)

• 2379 Tests for doppler factor functions (2379) (@sonachitchyan)

• 2348 Fixes gamma-ray notebook to run more easily (2348) (@andrewfullard)

• 2381 Removed hardcoding of RPacket radius (2381) (@)

• 2384 Post-release 2023.08.06 (2384) (@tardis-bot)

release-2023.08.06 (2023/08/05 20:43)

• 2383 Pre-release 2023.08.06 (2383) (@tardis-bot)

• 2382 Remove outdated docstring from test_montecarlo.py (2382) (@chvogl)

• 2376 Add init.py to energy input module (2376) (@andrewfullard)

• 2373 Post-release 2023.07.30 (2373) (@tardis-bot)

release-2023.07.30 (2023/07/29 20:47)

• 2372 Pre-release 2023.07.30 (2372) (@tardis-bot)

• 2365 integrate radiation field (2365) (@wkerzendorf)

• 2371 Prevent empty convergence plot Error when n_iteration=1 (2371) (@DeerWhale)

• 2369 Post-release 2023.07.23 (2369) (@tardis-bot)

release-2023.07.23 (2023/07/23 10:47)

• 2368 Pre-release 2023.07.23 (2368) (@tardis-bot)

• 2367 integrate new packetsource (2367) (@wkerzendorf)

• 2366 New packet source (extending 2352) (2366) (@wkerzendorf)

• 2354 removed duplicate entry of afloers (2354) (@afloers)

• 2360 restructure configuration object (2360) (@wkerzendorf)

• 2361 add deprecated decorator (2361) (@wkerzendorf)

• 2359 Rename NumbaPlasma to OpacityState (2359) (@andrewfullard)

• 2313 Grotrian Diagram Plot Appearance (2313) (@AyushiDaksh)

• 2357 Post-release 2023.07.16 (2357) (@tardis-bot)

release-2023.07.16 (2023/07/16 15:15)

• 2356 Pre-release 2023.07.16 (2356) (@tardis-bot)

• 2355 Fixed spelling mistake in Wien’s displacement law (2355) (@afloers)

• 2351 Post-release 2023.07.09 (2351) (@tardis-bot)

release-2023.07.09 (2023/07/09 12:30)

• 2350 Pre-release 2023.07.09 (2350) (@tardis-bot)

• 2347 Fix frame transformations of continuum opacity (2347) (@chvogl)

• 2139 Gamma ray refactor (2139) (@andrewfullard)

• 2327 Refactor Model Reader on the Stella example (2327) (@wkerzendorf)

• 2346 Post-release 2023.07.02 (2346) (@tardis-bot)

release-2023.07.02 (2023/07/01 20:49)

• 2345 Pre-release 2023.07.02 (2345) (@tardis-bot)

• 2344 Make MontecarloTransport and montecarlo_numba track the last line interaction shell ids for real and virtual packets (2344) (@AyushiDaksh)

• 2343 Rename RPacketTracker.interact_id to RPacketTracker.num_interactions (2343) (@AyushiDaksh)

• 2221 Fix typos in repository (2221) (@AyushiDaksh)

• 2330 Benchmarks Push To Repo Bug Fix (2330) (@atharva-2001)

• 2335 Dispatch Compare Refdata Event to Refdata Repo (2335) (@atharva-2001)

• 2305 Fix to helium indexing in NLTE (2305) (@aoifeboyle)

• 2341 Remove duplicated continuum interaction code (2341) (@chvogl)

• 2340 Post-release 2023.06.25 (2340) (@tardis-bot)

release-2023.06.25 (2023/06/25 12:43)

• 2339 Pre-release 2023.06.25 (2339) (@tardis-bot)

• 2337 Separate the last iteration from Simulation.run() (2337) (@)

• 2219 Remove dead (unused) fixtures (2219) (@)

• 2336 Fix doc failure after restructuring packet source seed (2336) (@)

• 2329 Move packet seeds logic into PacketSource instead of MontecarloTransport (2329) (@)

• 2326 Track bf and ff opacities with vpackets (2326) (@ymatsumu)

• 2334 Post-release 2023.06.18 (2334) (@tardis-bot)

release-2023.06.18 (2023/06/17 20:48)

• 2333 Pre-release 2023.06.18 (2333) (@tardis-bot)

• 2311 Make nthreads a property of MontecarloRunner instead of Simulation class (2311) (@)

• 2260 [WIP] Basic Benchmarks Using ASV (2260) (@atharva-2001)

• 2317 Rename MontecarloRunner to MontecarloTransport (2317) (@)

• 2307 Post-release 2023.06.04 (2307) (@tardis-bot)

release-2023.06.04 (2023/06/03 20:53)

• 2306 Pre-release 2023.06.04 (2306) (@tardis-bot)

• 2302 Disable HDF5 file locking on documentation workflow (2302) (@epassaro)

• 2300 Post-release 2023.05.28 (2300) (@tardis-bot)

release-2023.05.28 (2023/05/27 20:51)

• 2299 Pre-release 2023.05.28 (2299) (@tardis-bot)

• 2298 Bump hdf5 to v1.12 (2298) (@epassaro)

• 2297 Post-release 2023.05.21 (2297) (@tardis-bot)

release-2023.05.21 (2023/05/20 20:53)

• 2296 Pre-release 2023.05.21 (2296) (@tardis-bot)

• 2295 Post-release 2023.05.15 (2295) (@tardis-bot)

release-2023.05.15 (2023/05/15 10:10)

• 2294 Pre-release 2023.05.14 (2294) (@tardis-bot)

• 2290 Post-release 2023.05.07 (2290) (@tardis-bot)

release-2023.05.07 (2023/05/07 13:47)

• 2289 Pre-release 2023.05.07 (2289) (@tardis-bot)

• 2201 Changing construction of the first guess and coefficient matrices in NLTE solver (2201) (@sonachitchyan)

• 2287 Post-release 2023.04.30 (2287) (@tardis-bot)

release-2023.04.30 (2023/04/30 13:26)

• 2286 Pre-release 2023.04.30 (2286) (@tardis-bot)

• 2284 Save LFS Objects always() (2284) (@atharva-2001)

• 2280 Prevent tests from running on forks (2280) (@atharva-2001)

• 2283 Post-release 2023.04.23 (2283) (@tardis-bot)

release-2023.04.23 (2023/04/22 20:49)

• 2282 Pre-release 2023.04.23 (2282) (@tardis-bot)

• 2121 adding nonhomologous_grid.py (2121) (@sonachitchyan)

• 2278 Post-release 2023.04.16 (2278) (@tardis-bot)

release-2023.04.16 (2023/04/15 20:47)

• 2277 Pre-release 2023.04.16 (2277) (@tardis-bot)

• 2267 Check MD5 sums of downloaded atom data (2267) (@epassaro)

• 2273 Fixes for update reference data workflow (2273) (@epassaro)

• 2275 Post-release 2023.04.09 (2275) (@tardis-bot)

release-2023.04.09 (2023/04/08 20:44)

• 2274 Pre-release 2023.04.09 (2274) (@tardis-bot)

• 2249 Port update reference data pipeline to GitHub Actions (2249) (@epassaro)

• 2233 Added documentation for parallel fixes for estimators (2233) (@1e9abhi1e10)

• 2250 Arepo mass average fix (2250) (@AlexHls)

• 2257 Post-release 2023.03.26 (2257) (@tardis-bot)

release-2023.03.26 (2023/03/26 01:55)

• 2256 Pre-release 2023.03.26 (2256) (@tardis-bot)

• 2248 Post-release 2023.03.20 (2248) (@tardis-bot)

release-2023.03.20 (2023/03/20 12:39)

• 2247 Pre-release 2023.03.20 (2247) (@tardis-bot)

• 2246 Fix team reviewers on workflows (2246) (@epassaro)

• 2237 MonteCarlo packet progress bar completes to 100% (2237) (@shreyas3156)

• 2243 Fix for release dates (2243) (@epassaro)

• 2242 Fix for automerge (2242) (@epassaro)

• 2236 Docs Fix: Download Atom Data in rpacket_tracking.ipynb (2236) (@atharva-2001)

• 2204 Add docstrings to subpackages (2204) (@PommesFrittes)

• 2223 Post-release 2023.02.27 (2223) (@tardis-bot)

release-2023.02.27 (2023/02/27 08:53)

• 2222 Pre-release 2023.02.26 (2222) (@tardis-bot)

• 2214 Correct the description of ‘no_of_packets’ in Monte Carlo Configuration (2214) (@1e9abhi1e10)

• 2213 Post-release 2023.02.20 (2213) (@tardis-bot)

• 2194 Cache LFS objects in the tests workflow (2194) (@atharva-2001)

release-2023.02.2 (2023/02/20 10:04)

• 2211 Pre-release 2023.02.19 (2211) (@tardis-bot)

• 2210 Post-release 2023.02.16 (2210) (@tardis-bot)

release-2023.02.16 (2023/02/16 09:18)

• 2208 Pre-release 2023.02.12 (2208) (@tardis-bot)

• 2190 Add version tag to simulation objects (2190) (@krimmskramms)

• 2206 Post-release 2023.02.06 (2206) (@tardis-bot)

release-2023.02.06 (2023/02/06 10:00)

• 2205 Pre-release 2023.02.05 (2205) (@tardis-bot)

• 2200 Fix config reader tests (2200) (@chvogl)

• 2195 Reading nlte_excitation_species from config (2195) (@sonachitchyan)

• 2198 Fixing test_store_runner_to_hdf (2198) (@sonachitchyan)

• 2185 Rename T variables to temperature (2185) (@1e9abhi1e10)

• 2171 Adding nlte solver (2171) (@sonachitchyan)

• 2187 Downloading nlte_atom_data in ref data (2187) (@sonachitchyan)

• 2188 Post-release 2023.01.11 (2188) (@tardis-bot)

release-2023.01.11 (2023/01/11 11:25)

• 2186 Pre-release 2023.01.08 (2186) (@tardis-bot)

• 2182 Post-release 2022.12.26 (2182) (@tardis-bot)

release-2022.12.26 (2022/12/26 09:51)

• 2180 Pre-release 2022.12.25 (2180) (@tardis-bot)

• 2170 Add missing init.py files to transport and geometry subpackages (2170) (@epassaro)

• 2173 Post-release 2022.12.12 (2173) (@tardis-bot)

release-2022.12.12 (2022/12/12 10:02)

• 2172 Pre-release 2022.12.11 (2172) (@tardis-bot)

• 2150 Kilonova missing zeta (2150) (@gleck97)

• 2158 NLTE jacobian matrix (2158) (@sonachitchyan)

• 2154 Fixing typos for nlte ion (2154) (@sonachitchyan)

• 2159 Fix relativistic packet initialization (2159) (@chvogl)

release-2022.11.21 (2022/11/21 10:15)

• 2160 Pre-release 2022.11.20 (2160) (@tardis-bot)

• 2156 Post-release 2022.11.17 (2156) (@tardis-bot)

release-2022.11.17 (2022/11/17 13:45)

• 2155 Pre-release 2022.11.17 (2155) (@tardis-bot)

• 2152 Set specific qgrid feedstock version (2152) (@andrewfullard)

• 2140 Adding nlte_rate_equation_solver.py (2140) (@sonachitchyan)

• 2147 Pin setuptools_scm to v6 (2147) (@epassaro)

• 2127 Possible fix for prerelease workflow (2127) (@andrewfullard)

• 2146 Add missing cell to download atom data (2146) (@epassaro)

• 2136 Restructuring NumbaModel (2136) (@satwik-kambham)

• 2132 Adding rate matrix index (2132) (@sonachitchyan)

• 2130 moved helium nlte to a seperate file helium_nlte.py (2130) (@sonachitchyan)

• 2124 Cleaning model state (2124) (@satwik-kambham)

• 2096 Small bug fix for He NLTE. (2096) (@)

• 1923 Fixing latex_label Parameter within write_to_tex function (1923) (@bartnikm)

• 2095 Removing outdated documentation and creating developer tools section (2095) (@isaacgsmith)

• 2099 Arbitrary isotope decay handling and positronium (2099) (@andrewfullard)

• 2118 Integrating experimental model state (2118) (@satwik-kambham)

• 2120 Update arepo docs notebook to be pre-run (2120) (@AlexHls)

• 2115 added docs for montecarlo packet visualization (2115) (@jayantbhakar)

• 2117 Runs cells in arepo notebook to avoid downloading files (2117) (@andrewfullard)

• 2103 New geometry class (2103) (@satwik-kambham)

• 2111 New TARDIS flowchart and cleaning up physics walkthrough (2111) (@isaacgsmith)

• 2098 New Composition Class (2098) (@satwik-kambham)

• 2108 Rework Estimators and Convergence Docs (2108) (@isaacgsmith)

• 2105 Documentation for Features In-Progress (2105) (@isaacgsmith)

• 2107 Added positronium notes (2107) (@andrewfullard)

• 2091 Added interaction type in rpacket_tracker (2091) (@jayantbhakar)

• 2110 removed scatter function from interaction.py (2110) (@sonachitchyan)

• 2106 Resturcture ABCs import from collections module (2106) (@blackbird7112)

• 2093 Fixing Docs Warnings (2093) (@isaacgsmith)

• 2073 rpacket_tracker returns dataframe (2073) (@jayantbhakar)

• 2104 Re-produced PR 1826 (2104) (@andrewfullard)

• 2097 Creating new docs building instructions (2097) (@isaacgsmith)

• 2088 Arepo docs fix (2088) (@AlexHls)

• 1941 Improved arepo parser (1941) (@AlexHls)

• 2026 Adding physics introduction to documentation (2026) (@isaacgsmith)

• 2084 Fix broken links in workflow files and goverance md (2084) (@blackbird7112)

• 2083 Moved trace_packet to tardis tansport (2083) (@Rodot-)

• 2082 Added documetation on how to compare environment before update (2082) (@jaladh-singhal)

• 2076 Modified Function Name in Config validator according to PEP8 (2076) (@blackbird7112)

• 2062 Remove yaml_load_config_file (2062) (@aman1971)

• 2052 Created a smart HDF Reader which can re-produce simulation object (2052) (@satwik-kambham)

• 2070 Pre-release 2022.06.26 (2070) (@tardis-bot)

• 2069 Wait for pull request creation (2069) (@epassaro)

• 2067 Begin geometry subfolder (2067) (@nolanbrown01)

• 2050 Update Jsonschema package to V4 (2050) (@blackbird7112)

• 2065 Continuing geometry restructure (2065) (@nolanbrown01)

• 2063 Initial geometry restructure (2063) (@nolanbrown01)

• 2061 Post-release 2022.06.19 (2061) (@tardis-bot)

release-2022.06.19 (2022/06/18 22:25)

• 2060 Pre-release 2022.06.19 (2060) (@tardis-bot)

• 2036 Restructure code to remove the single_packet_seed field (2036) (@blackbird7112)

• 2054 Auto-merge fixes (2054) (@epassaro)

• 2053 Change developer installation command (2053) (@epassaro)

• 2048 Disable profiling page build on pull requests (2048) (@epassaro)

• 2042 Polish up Quickstart guide (2042) (@epassaro)

• 2010 Enable automerge on pre and post-release workflows (2010) (@epassaro)

• 2046 Stop redirecting docs page (2046) (@epassaro)

• 2045 Add DOI badge to credits section (2045) (@epassaro)

• 2047 Ignore gamma-ray deposition notebook for now (2047) (@andrewfullard)

• 1698 Gamma ray propagation (1698) (@andrewfullard)

• 2044 Post-release 2022.06.05 (2044) (@tardis-bot)

release-2022.06.05 (2022/06/04 21:07)

• 2043 Pre-release 2022.06.05 (2043) (@tardis-bot)

• 2039 Check PEP8 on CI (2039) (@epassaro)

• 2037 Update README.rst in post-release (2037) (@epassaro)

• 2024 Added v_inner and v_outer, enable_nonhomologous_expansion for future use in nonhomologous expansion (2024) (@sonachitchyan)

• 2038 Fix bot aliases in .mailmap (2038) (@epassaro)

• 2027 Switch from docstr-coverage package to interrogate in CI pipelines (2027) (@epassaro)

• 2020 Fixes for CITATION.cff (2020) (@epassaro)

• 2033 Merge all CI users on .mailmap (2033) (@epassaro)

• 2028 Rebuild installation page (2028) (@epassaro)

• 1921 Formal integral documentation (1921) (@isaacgsmith)

• 2030 Fix estimators parallel (2030) (@Rodot-)

• 2019 Added compatability to current version of carsus atomic data (2019) (@Rodot-)

• 2011 Build and cache conda environments with lockfiles (2011) (@epassaro)

• 1991 Re-write download_from_url using Astropy’s download_file (1991) (@epassaro)

• 1992 Fix low temperature problem of Van Regemorter approximation (1992) (@chvogl)

• 2018 Post-release 2022.05.08 (2018) (@tardis-bot)

release-2022.05.08 (2022/05/07 20:27)

• 2016 Pre-release 2022.05.08 (2016) (@tardis-bot)

• 1996 Fixes for compare-refdata pipeline (1996) (@epassaro)

• 2012 Fix post-release workflow automation (2012) (@epassaro)

• 2007 Use pull_request_target trigger in release workflow (2007) (@epassaro)

• 2008 Move link_t_rad_t_electron to config file (2008) (@sonachitchyan)

• 2009 Revert “Removing Levels Index Variable Within Atomic Data Preperation” (2009) (@Rodot-)

• 2006 Post-release 2022.05.04 (2006) (@tardis-bot)

release-2022.05.04 (2022/05/04 12:35)

• 2005 Pre-release 2022.05.04 (2005) (@tardis-bot)

• 2003 Fix for isotope abundance parsing (2003) (@Rodot-)

• 1995 Force constant version date length (1995) (@epassaro)

• 1999 Create TARDIS release workflow (1999) (@epassaro)

• 2001 Post-release workflow (2001) (@epassaro)

• 2000 Make docs build in parallel (2000) (@isaacgsmith)

• 1998 Fix concurrency groups in workflows (1998) (@epassaro)

• 1987 Better documentation build workflow from 2021 GA Hackathon (1987) (@epassaro)

• 1989 Pre-release workflow (1989) (@epassaro)

• 1988 Use Azure mirror for reference data in testing pipeline (1988) (@epassaro)

• 1978 Plasma number densities using isotopes (1978) (@andrewfullard)

• 1985 Migrate testing pipeline to GitHub Actions (1985) (@epassaro)

• 1981 Better docstring coverage workflow from 2021 GA Hackathon (1981) (@epassaro)

• 1980 Check Black format on master branch (1980) (@epassaro)

• 1982 Add bot comment with directions to update .mailmap (1982) (@epassaro)

• 1973 Use spec file on Zenodo pipeline (1973) (@epassaro)

• 1983 Remove files already superseded by templates (1983) (@epassaro)

• 1977 Ignore more Black commits (1977) (@epassaro)

• 1971 Blackify TARDIS again (1971) (@epassaro)

• 1974 Add disclaimer to environment file regarding conda-forge recipe (1974) (@epassaro)

• 1970 Remove pull request bot comment workflow (1970) (@epassaro)

• 1969 Fix docs build after upgrading conda environment (1969) (@wkerzendorf)

release-2022.4.24 (2022/04/21 20:19)

• 1933 Intensity p rays (1933) (@Rodot-)

• 1948 Update TARDIS environment after replacing PyNE (1948) (@epassaro)

• 1957 Removing Levels Index Variable Within Atomic Data Preperation (1957) (@bartnikm)

• 1968 fixed index typo in Saha solver documentation (1968) (@afloers)

• 1959 Disable mamba on Azure Pipelines (1959) (@epassaro)

• 1967 Logging/csvy parsers errors (1967) (@wkerzendorf)

• 1813 Replacing PyNE with radioactivedecay for radionuclide decay calculations (1813) (@lemointm)

release-2022.4.1 (2022/04/07 10:38)

• 1925 Plasma Graph Tutorial (1925) (@bartnikm)

release-2022.4.3 (2022/03/28 10:30)

• 1899 Filtering Levels Parameter within Plasma Calculations (1899) (@bartnikm)

• 1920 Estimators and Convergence Documentation (1920) (@isaacgsmith)

• 1938 Pin Jinja version (1938) (@isaacgsmith)

release-2022.3.27 (2022/03/23 11:51)

• 1928 Fixing various physics documentation issues (1928) (@isaacgsmith)

release-2022.3.2 (2022/03/14 11:16)

• 1898 Making changes to estimators (1898) (@isaacgsmith)

release-2022.3.13 (2022/03/10 10:35)

• 1922 Fixing documentation links and misc. API documentation fixes (1922) (@isaacgsmith)

release-2022.3.6 (2022/03/03 14:21)

• 1919 GPU Options (1919) (@KevinCawley)

• 1918 Fix documentation build failure due to PR #1823 (1918) (@atharva-2001)

• 1917 Continuum Opacities (1917) (@Rodot-)

• 1823 Disable Convergence Plots by default (1823) (@atharva-2001)

• 1914 add continuum tracer (1914) (@wkerzendorf)

release-2022.2.27 (2022/02/24 16:00)

• 1886 Continuum branch [attempted merge with master] (1886) (@wkerzendorf)

• 1907 Add note on GPU selection to formal integral (1907) (@KevinCawley)

• 1710 Changed Formatting for the logger based on Log Level (1710) (@DhruvSondhi)

• 1901 Fix PyTest fixtures and updated mainloop to properly compile (1901) (@Rodot-)

• 1900 Make update-refdata pipeline open a PR instead of merging changes (1900) (@epassaro)

release-2022.2.2 (2022/02/17 15:14)

• 1837 CUDA Version of the Formal Integral (1837) (@KevinCawley)

• 1891 Fixing Broken Latex Code (1891) (@bartnikm)

• 1868 Fixing Plasma Graph to Allow .dot and .tex file Generation (1868) (@bartnikm)

• 1893 Fixing small docs issues (1893) (@isaacgsmith)

release-2022.2.6 (2022/02/02 12:16)

• 1888 Pin Black (1888) (@atharva-2001)

• 1881 Changed to append seed & index values only once for a particular RPacketTracker instance (1881) (@DhruvSondhi)

release-2022.1.3 (2022/01/29 08:59)

• 1877 printing packet information (1877) (@wkerzendorf)

• 1867 Arepo parser (1867) (@AlexHls)

• 1843 Changed Default Log Level to INFO for the Simulation Logging (1843) (@DhruvSondhi)

• 1849 Interactive docs for models (1849) (@isaacgsmith)

• 1876 fixed outdated pytest tardis command in documentation (1876) (@afloers)

• 1874 move transport related parts to r_packet_transport (1874) (@wkerzendorf)

• 1872 Fix links in the code of conduct (1872) (@isaacgsmith)

• 1847 Add a ModelState class (1847) (@atharva-2001)

release-2022.1.23 (2022/01/21 11:50)

• 1865 Fixing links on contributing page (1865) (@isaacgsmith)

• 1866 Refactor test_configuration_namespace.py (1866) (@atharva-2001)

• 1861 Renamed RPacketCollection Class to RPacketTracker (1861) (@DhruvSondhi)

release-2022.1.16 (2022/01/12 10:11)

• 1827 Adding Explanations to Spectrum Configuration (1827) (@bartnikm)

• 1752 Add tests to SDEC plotter module (1752) (@jaladh-singhal)

• 1848 Switching progress bars page to rst (1848) (@isaacgsmith)

release-2022.1.9 (2022/01/06 10:59)

• 1846 Fix Virtual Packet Logging Bug (1846) (@atharva-2001)

release-2021.12.19 (2021/12/13 13:38)

• 1834 Adding Luminosity Integral Explanation to Supernova Configuration (1834) (@bartnikm)

• 1842 Fixed fstring issue from mixing quotes and reformatted files from fstring PR with black (1842) (@Rodot-)

• 1841 Fixed the Failing Documentation for Tracking RPacket Feature (1841) (@DhruvSondhi)

release-2021.12.12 (2021/12/10 12:30)

• 1835 Reorganizing docs for website release (1835) (@isaacgsmith)

• 1748 Tracking RPacket Properties in Montecarlo Single Packet Loop Function (1748) (@DhruvSondhi)

• 1706 Changed to fstring (1706) (@svenkat19)

• 1833 Editing instructions for contributing to the documentation (1833) (@isaacgsmith)

release-2021.12.5 (2021/12/02 14:14)

• 1832 Convert quantities to arrays when plotting in SDEC plot (1832) (@atharva-2001)

• 1830 Name plotly traces in SDEC plot (1830) (@atharva-2001)

release-2021.11.28 (2021/11/25 12:29)

• 1825 changed all files to import constants from only tardis (1825) (@shilpiprd)

release-2021.11.21 (2021/11/14 18:43)

release-2021.11.14 (2021/11/12 09:24)

• 1799 Bug fixes and Improvements in Custom Abundance Widget (1799) (@yuyizheng1112)

• 1803 Option to make docs build in parallel (1803) (@isaacgsmith)

• 1817 Fixing SDEC docs page (1817) (@isaacgsmith)

release-2021.11.7 (2021/10/31 19:43)

release-2021.10.31 (2021/10/27 15:00)

• 1821 remove numexpr (1821) (@wkerzendorf)

• 1788 Add cmap option to specify the colormap of plot (1788) (@yuyizheng1112)

• 1801 Cleaning up docs build (1801) (@isaacgsmith)

• 1808 Fixing import for binder (1808) (@isaacgsmith)

• 1816 fix push job on update changelog workflow (1816) (@epassaro)

release-2021.10.17 (2021/10/14 11:37)

• 1811 Fixing broken documentation (1811) (@isaacgsmith)

• 1744 Basic Spectrum Generation Interactive Documentation (1744) (@isaacgsmith)

• 1810 Add option to add Observed Spectrum (2) (1810) (@atharva-2001)

release-2021.10.1 (2021/10/06 09:38)

• 1806 Pin jsonschema to v3 (1806) (@atharva-2001)

• 1805 Revert “Add option to add Observed Spectrum” (1805) (@)

• 1761 Add option to add Observed Spectrum (1761) (@atharva-2001)

• 1794 Change virtual spectrum spawn range start value to 1 (1794) (@atharva-2001)

release-2021.9.26 (2021/09/24 17:20)

• 1757 Auto-Generating Tutorials Page (1757) (@isaacgsmith)

release-2021.9.19 (2021/09/17 10:41)

• 1784 Restructure Custom Abundance Widget code (1784) (@yuyizheng1112)

• 1763 Making Changes to Several Tutorials (1763) (@isaacgsmith)

release-2021.9.12 (2021/09/09 07:18)

• 1790 disable changelog in release pipeline (1790) (@epassaro)

• 1769 Changed the way specific_log_level flag works in the Logging Configuration (1769) (@DhruvSondhi)

release-2021.8.29 (2021/08/26 13:02)

release-2021.8.26 (2021/08/26 12:40)

• 1789 fix zenodo pipeline (2nd) (1789) (@epassaro)

• 1787 fix zenodo pipeline env (1787) (@epassaro)

• 1786 fix for release task (1786) (@epassaro)

• 1703 Adding Progress Bars (1703) (@atharva-2001)

• 1775 orchestrating continuous delivery pipeline (1775) (@epassaro)

• 1751 Integrate custom abundance widget as a full module (1751) (@yuyizheng1112)

• 1778 Fix Hover Data in Plasma Convergence Plots (1778) (@atharva-2001)

• 1693 Enabling virtual_packet_logging by default in the visualization folder (1693) (@atharva-2001)

release-2021.8.15.0 (2021/08/12 10:24)

• 1770 Rename cplots to convergence_plots (1770) (@atharva-2001)

• 1772 Reverse legend in Plasma Convergence Plots (1772) (@atharva-2001)

release-2021.8.8.0 (2021/08/05 14:49)

• 1768 Renamed specific log flag to specific_log_level (1768) (@DhruvSondhi)

• 1721 Restructure Model Configuration Documentation (1721) (@isaacgsmith)

release-2021.8.1.0 (2021/07/29 14:57)

• 1753 Adding Convergence Plots to the Documentation (1753) (@atharva-2001)

• 1738 TARDIS Grid (1738) (@marxwillia)

• 1755 Changing Note Format in Visualization Notebooks (1755) (@isaacgsmith)

• 1740 Renamed montecarlo_logger.py to montecarlo_tracking.py (1740) (@DhruvSondhi)

release-2021.7.25.0 (2021/07/23 12:16)

• 1697 Interact Button in Documentation (1697) (@isaacgsmith)

• 1636 Adding Convergence Plots (1636) (@atharva-2001)

• 1723 Edit docstring in run_tardis (1723) (@atharva-2001)

• 1743 Fix for Unresponsive Main Page due to Twitter Widget (1743) (@atharva-2001)

• 1746 Fixing Docs Build (1746) (@isaacgsmith)

• 1730 Renamed log_state to log_level for setting the logging level in the Logger (1730) (@DhruvSondhi)

• 1736 Fixing Doc Build Warnings (1736) (@isaacgsmith)

• 1737 Add Jaladh to mailmap (1737) (@jaladh-singhal)

• 1739 Fixed IPython Displaying the Plasma Stratification (Table) even when the Logger is turned Off (1739) (@DhruvSondhi)

• 1742 Reduce damping_constant under t_inner property in tardis_example.yml (1742) (@atharva-2001)

release-2021.7.18.0 (2021/07/16 10:41)

• 1665 Demonstrating the nelements and the species_list functionality in the SDEC plot notebook (1665) (@marxwillia)

• 1727 Fixing Quickstart Metadata (1727) (@isaacgsmith)

• 1726 display “latest” in doc version (1726) (@epassaro)

• 1716 Small fixes to docs (1716) (@isaacgsmith)

• 1722 Adding missing import for IonNumberDensityHeNLTE in standard_plasmas.py (1722) (@DhruvSondhi)

• 1714 Removed Formatting from Existing Log Messages (1714) (@DhruvSondhi)

release-2021.7.14.0 (2021/07/14 11:39)

• 1707 Open in VSCode badge (1707) (@wkerzendorf)

• 1713 fix package data for conda-forge package (1713) (@epassaro)

• 1711 Changed the xlim and the ylabel (From PR #1646) (1711) (@Rodot-)

release-2021.7.12.0 (2021/07/12 16:05)

• 1686 fix pip install (1686) (@epassaro)

• 1701 Adding Logging Support for Caught Exceptions (1701) (@DhruvSondhi)

• 1684 Moved Simulation & Montecarlo Logging Frameworks to tardis/io/logger folder (1684) (@DhruvSondhi)

• 1691 Create profiling directory (1691) (@KevinCawley)

release-2021.7.11.0 (2021/07/09 13:07)

• 1680 add docstr-coverage badge (1680) (@epassaro)

• 1696 Adding mu and r to virtual packet logging (1696) (@isaacgsmith)

• 1695 Enabling spectrum plotting in the frequency domain (1695) (@isaacgsmith)

release-2021.7.5 (2021/07/05 10:32)

• 1688 final changes for release pipeline (1688) (@epassaro)

• 1683 prepare release pipeline for CalVer (1683) (@epassaro)

release-2021.07.01 (2021/07/01 19:05)

• 1674 APE 17 migration (1674) (@epassaro)

• 1658 add refdata repo selection in template (1658) (@epassaro)

• 1677 Revert “Port tardis_opacities script from tardisanalysis” (1677) (@andrewfullard)

• 1660 Small fixes to I/O documentation (1660) (@isaacgsmith)

• 1681 add latest black commit to .git-blame-ignore-revs (1681) (@epassaro)

• 1678 Enabling Repository on Binder (1678) (@isaacgsmith)

• 1679 Formatted files with Black (1679) (@DhruvSondhi)

• 1633 Implementing Logging Configuration for Notebook Logging (1633) (@DhruvSondhi)

• 1642 Adding Glossary (1642) (@J-Je0ng)

• 1580 Port tardis_opacities script from tardisanalysis (1580) (@MarkMageeAstro)

v3.0.dev4019 (2021/06/25 12:09)

• 1664 use conda-forge packages instead of pypi (1664) (@epassaro)

• 1667 Moving Profiling Page (1667) (@isaacgsmith)

• 1659 Restructure Documentation pt. 2 (1659) (@isaacgsmith)

• 1656 Editing sponsors and credits pages of documentation (1656) (@isaacgsmith)

• 1597 add value error to ensure active virtual packet logging in SDECPlotter (1597) (@yuyizheng1112)

• 1630 Fix FileExistsError in to_hdf() (1630) (@yuyizheng1112)

• 1641 Editing Installation Page (1641) (@musabbihaz)

• 1657 Add SnakeViz profiling example (1657) (@KevinCawley)

v3.0.dev4010 (2021/06/18 17:22)

• 1644 add mailmap check workflow (1644) (@epassaro)

• 1589 Adding Interactive Initialization Documentation (1589) (@isaacgsmith)

• 1627 Correct misspelling in sdec_plot (1627) (@yuyizheng1112)

• 1632 Formatting Logging Output for Simulation (1632) (@DhruvSondhi)

• 1652 changes to environment (1652) (@epassaro)

• 1650 Adding functionality to Detect Running Environments for TARDIS Simulations (1650) (@DhruvSondhi)

• 1615 add flag to disable nbsphinx (1615) (@epassaro)

• 1651 force orphan gh-pages branch (1651) (@epassaro)

• 1643 Restructure Documentation (1643) (@isaacgsmith)

• 1647 Fix for the v-packet logging while parallelism is enabled. (1647) (@Rodot-)

• 1645 configure codecov (1645) (@epassaro)

• 1586 add gh pages instruction (1586) (@epassaro)

v3.0.dev3998 (2021/06/14 10:52)

• 1648 fix compareWith parameter in release pipeline (1648) (@epassaro)

• 1609 update refdata procedure docs (1609) (@epassaro)

• 1635 test before make a new release (1635) (@epassaro)

• 1617 Fixing docstrings & indentation related warnings for Sphinx (1617) (@DhruvSondhi)

• 1565 Fix for close line test. (1565) (@Rodot-)

• 1639 push montecarlo data to refdata repo (1639) (@epassaro)

• 1595 move zenodo pipeline to GA (1595) (@epassaro)

• 1623 force pyne nomoab_openmc version (1623) (@epassaro)

• 1622 Adding GitHub to sponsors page (1622) (@isaacgsmith)

• 1631 update mailmap and orcid (1631) (@epassaro)

• 1619 disable repeat on pr comment (1619) (@epassaro)

v3.0.dev3983 (2021/06/04 12:50)

• 1555 Replacing the contents of the news section with TARDIS twitter feed (1555) (@atharva-2001)

• 1610 add token at checkout step (1610) (@epassaro)

• 1594 Fixing JSON Schema not Rendering Properly in the Documentation (1594) (@DhruvSondhi)

• 1607 SDEC Visibility Fix (1607) (@atharva-2001)

• 1603 Bot mail change (1603) (@epassaro)

• 1601 Fixing documentation build (1601) (@isaacgsmith)

• 1602 add fetch depth param to changelog workflow (1602) (@epassaro)

• 1588 Added PR review checklist workflow (1588) (@aribalam)

• 1592 Flexible packet initial radius (1592) (@andrewfullard)

• 1598 Resolving warnings in ADS notebook (1598) (@isaacgsmith)

• 1596 Fixing bibliography in documentation build (1596) (@isaacgsmith)

• 1590 Fixing inconsistencies for rst formatting in Docs (Second Iteration) (1590) (@DhruvSondhi)

v3.0.dev3970 (2021/05/28 17:43)

• 1570 add fetch depth param to Azure template (1570) (@epassaro)

• 1567 review environment file (1567) (@epassaro)

• 1584 Making sponsors page of documentation (1584) (@isaacgsmith)

• 1577 Fixing issues with Citations & Label references in Docs (1577) (@marxwillia)

• 1581 changes to badges (1581) (@marxwillia)

v3.0.dev3959 (2021/05/21 14:44)

• 1582 Fixing Team Link redirection in Code Of Conduct (1582) (@marxwillia)

v3.0.dev3957 (2021/05/20 15:27)

• 1571 Fix numba deprecation (1571) (@KevinCawley)

• 1578 minor changes to compare refdata pipeline (1578) (@epassaro)

• 1557 Changed Quickstart Example according to #1477 (1557) (@aribalam)

• 1575 Fixing virtual_packet_logging instructions for line info widget (1575) (@DhruvSondhi)

• 1574 Revert “Adding Instructions For Enabling virtual_packet_logging Properties in Config” (1574) (@jaladh-singhal)

v3.0.dev3952 (2021/05/14 13:44)

• 1559 Added support for passing Configuration object in run_tardis (1559) (@aribalam)

• 1553 Fixing RST Formatting for config_validator.rst (1553) (@DhruvSondhi)

• 1551 Adding Instructions For Enabling virtual_packet_logging Properties in Config (1551) (@DhruvSondhi)

• 1528 Revising “Packet Propagation” page of physics docs (1528) (@isaacgsmith)

• 1569 Fixing docs build problem (1569) (@isaacgsmith)

v3.0.dev3947 (2021/05/12 16:42)

• 1566 better handling of pickle5 backport (1566) (@epassaro)

• 1562 added symlinks for tardis_example.yml (1562) (@parikshit14)

v3.0.dev3945 (2021/05/05 10:03)

• 1434 create update refdata pipeline (1434) (@epassaro)

• 1554 Adding Config Value Validation for Different Parameters via Config File (1554) (@DhruvSondhi)

• 1549 Numba formal integral (1549) (@Rodot-)

• 1546 Fixing Bad YAML output in the documentation (1546) (@atharva-2001)

• 1543 Restructuring r_packet.py (1543) (@andrewfullard)

• 1539 Add ion contributions to SDEC plotter (1539) (@MarkMageeAstro)

• 1531 Fixing SDEC labels bug in the documentation (1531) (@atharva-2001)

• 1450 string formatting done (try fixing all syntax errors) (1450) (@yashagg2001)

• 1493 Added workflow for Documentation preview generation (1493) (@aribalam)

• 1540 Fix version number in docs (1540) (@epassaro)

• 1538 clean template files (1538) (@epassaro)

• 1512 Improved default number of interpolate_shells for the formal integral (1512) (@chvogl)

• 1499 [WIP] Enable full tests for Formal Integral (1499) (@aribalam)

• 1530 Small fixes in git_workflow guide (1530) (@Molkree)

• 1535 Fix macOS tests (pickle protocol 5) (1535) (@epassaro)

• 1478 add the symlink to visualization examples (1478) (@yuyizheng1112)

• 1527 Fixing the documentation bug (1527) (@atharva-2001)

• 1526 enable manual trigger for docs (1526) (@epassaro)

• 1517 Add catch for missing elements in SDEC plot (1517) (@MarkMageeAstro)

• 1483 Corrected csvy model files (1483) (@antreev-brar)

• 1479 getting rid of lexsort warning (1479) (@atharva-2001)

• 1506 Add ability to plot only top contributing elements to SDEC plot (1506) (@MarkMageeAstro)

• 1509 Collisional ionization (1509) (@chvogl)

• 1477 Added option for keyword arguments in the TardisSpectrum’s plot method (1477) (@aribalam)

• 1474 Docs Update (1474) (@ankur-soni97)

• 1498 Feature request: add virtual-packet-logging option to run_tardis() (1498) (@yuyizheng1112)

• 1502 Correct .coveragerc file (1502) (@yuyizheng1112)

• 1492 Fix docstring mistakes in #1145 (1492) (@chvogl)

• 1505 Fixing Visualization Notebook Hyperlink (1505) (@KevinCawley)

• 1481 Added Documentation for Parallel execution with Numba and OpenMP (1481) (@aribalam)

• 1145 Add photoionization-related rates (1145) (@chvogl)

• 1470 Incorporating old physics section of the documentation (1470) (@isaacgsmith)

• 1459 Removed the deprecated –with-vpacket-logging flag (1459) (@antreev-brar)

• 1462 Renamed widgets subpackage to visualization and restructured modules within it (1462) (@jaladh-singhal)

• 1464 Fixed the array types when interpolate_shells > 0. Now returns the p… (1464) (@Rodot-)

• 1454 Reorganizing Models (1454) (@isaacgsmith)

• 1458 Added option to create redirects in docs configuration and redirected gui to visualization (1458) (@jaladh-singhal)

• 1457 Reproduced SDEC plots in demo notebook (1457) (@marxwillia)

• 1446 Fixed italicised Units in sdec_plot (1446) (@DhruvSondhi)

• 1438 Add documentation for Spectral Element Decomposition Plot (1438) (@jaladh-singhal)

• 1455 Clean up numba parallelization warnings #1416 (1455) (@antreev-brar)

• 1442 Fixed distance parameter not producing accurate SDEC plots (1442) (@jaladh-singhal)

• 1432 fix update changelog workflow (1432) (@epassaro)

• 1441 Rename SEDec to SDEC in Spectral element DEComposition plot (1441) (@jaladh-singhal)

• 1430 compare refdata with arbitrary labels (1430) (@epassaro)

• 1431 Documentation guidelines hotfix (1431) (@KevinCawley)

• 1424 Rename Kromer Plot to Spectral Element Decomposition (SEDec) Plot (1424) (@jaladh-singhal)

• 1409 add docstr-coverage workflow (1409) (@epassaro)

• 1405 Restructured development workflow and added code quality & documentation guidelines in it (1405) (@andrewfullard)

• 1421 Old physics reorganization (1421) (@andrewfullard)

• 1423 fixes for ci docs (1423) (@andrewfullard)

• 1420 Conversion of enlisted variable to int64 datatype (1420) (@andrewfullard)

• 1403 Fixing Hyperlinks in Documentation (1403) (@andrewfullard)

• 1410 Post reference data results (1410) (@andrewfullard)

• 1415 Add .log to gitignore, disabled montecarlo log (1415) (@andrewfullard)

v3.0.dev3808 (2021/01/21 11:22)

• 1414 blackify tests (1414) (@andrewfullard)

• 1413 Corrected the Hyperlink reference (1413) (@andrewfullard)

• 1398 add black check workflow (1398) (@andrewfullard)

v3.0.dev3801 (2021/01/08 16:28)

• 1399 fix tests with –generate-reference flag (1399) (@andrewfullard)

• 1393 Update environment file (1393) (@epassaro)

• 1404 added functionality for automatic date updation in docs (1404) (@andrewfullard)

v3.0.dev3796 (2020/12/28 12:12)

• 1402 explicitly add parso to dependencies (1402) (@andrewfullard)

v3.0.dev3794 (2020/12/21 10:22)

• 1241 Add modified Kromer plot to work with widgets (1241) (@marxwillia)

v3.0.dev3769 (2020/12/18 16:07)

• 1395 Update Matterbridge docs (1395) (@epassaro)

• 1369 Fix incorrect docstrings (1369) (@KevinCawley)

• 1383 add preview docs section (1383) (@epassaro)

• 1392 Fix documentation build (1392) (@epassaro)

• 1394 Revert “Fixing docs building problem” (1394) (@andrewfullard)

• 1387 Fixing docs building problem (1387) (@isaacgsmith)

• 1380 Packet logging fixes for visualization (1380) (@andrewfullard)

• 1384 Small fixes for existing workflows (1384) (@epassaro)

v3.0.dev3756 (2020/12/11 14:43)

• 1382 Fixing Quickstart Problem (1382) (@andrewfullard)

• 1379 Reorganizing files in docs (2/2) (1379) (@andrewfullard)

• 1378 Adding Plasma File in TOC (1378) (@andrewfullard)

• 1371 Reorganizing files in docs (1/2) (1371) (@andrewfullard)

• 1372 Update CI doc section (1372) (@epassaro)

• 1375 Fixed real packet logging of properties (1375) (@andrewfullard)

• 1354 Virtual packet logging fix (1354) (@andrewfullard)

• 1368 Fix of Issue #1176 (1368) (@andrewfullard)

• 1365 Parallel numba setup (1365) (@andrewfullard)

• 1331 Update changelog workflow (1331) (@andrewfullard)

v3.0.dev3698 (2020/12/04 14:50)

• 1366 Fix duplicate appending of scalars in HDF writer and add an overwrite option (1366) (@andrewfullard)

• 1364 Fixing issue #1357 (1364) (@andrewfullard)

• 1359 Fix of Issue #680 (1359) (@KevinCawley)

• 1361 Fixing issue #1177 (1361) (@isaacgsmith)

v3.0.dev3680 (2020/11/25 13:38)

• 1358 Fix C formal integral (1358) (@andrewfullard)

• 1352 Add Arjun’s emails to .mailmap (1352) (@andrewfullard)

• 929 Numba montecarlo (929) (@wkerzendorf)

v3.0.dev3673 (2020/11/18 11:26)

• 1353 fix doc workflow (1353) (@wkerzendorf)

• 1349 Adding documentation for research articles that used TARDIS (1349) (@andrewfullard)

v3.0.dev3541 (2020/11/10 13:45)

• 1340 Moved staticmethods of line_info module to a dedicated plot_util module (1340) (@marxwillia)

v3.0.dev3539 (2020/11/04 11:50)

• 1333 Rename testing pipeline (1333) (@epassaro)

• 1300 Remove pip install option from TARDIS installation docs (1300) (@jaladh-singhal)

• 1330 Small fix for release pipeline (1330) (@epassaro)

• 1332 Remove helper scripts (1332) (@epassaro)

• 1335 Updated gitignore to ignore auto-generated files (1335) (@jaladh-singhal)

• 1326 Add workflow for autodeploying documentation to github pages via an action (1326) (@morganlee123)

• 1283 Changed latex strings to raw strings (1283) (@Ak0303)

• 1310 Apply new template to refdata pipeline (1310) (@epassaro)

• 1308 Apply new template to release pipeline (1308) (@epassaro)

v3.0.dev3527 (2020/10/05 12:43)

• 1313 Add Sponsor button to TARDIS (1313) (@jaladh-singhal)

v3.0.dev3526 (2020/10/01 05:50)

• 1312 Add Matterbridge documentation (1312) (@epassaro)

• 1274 Add space to plasma error message (1274) (@marxwillia)

• 1280 Add widgets documentation to tardis docs (1280) (@marxwillia)

v3.0.dev3510 (2020/09/25 11:56)

• 1299 Model configuration output in HDF (1299) (@andrewfullard)

• 1304 Use tardis-refdata from Azure mirror (CI/CD) (1304) (@epassaro)

• 1264 Add line info widget to widgets subpackage (1264) (@jaladh-singhal)

v3.0.dev3504 (2020/09/09 06:16)

• 1296 Pin pyne to 0.7.0 (1296) (@andrewfullard)

• 1319 Numba montecarlo tests merged (1319) (@chvogl)

• 1318 Numba montecarlo profile1 (1318) (@Rodot-)

• 1317 Fixed calculate_distance_line showing nu_diff < 0 (1317) (@Rodot-)

• 1309 Re-add C formal integral (1309) (@chvogl)

v3.0.dev3503 (2020/09/04 05:18)

• 1291 Download atom data from opensupernova mirror (1291) (@epassaro)

• 1254 Fix how virtual_packet properties are saved in hdf (1254) (@jaladh-singhal)

• 1278 Pin numpy to v1.19 (1278) (@epassaro)

v3.0.dev3500 (2020/08/12 05:52)

• 1271 Move to NumPy 1.19 (1271) (@epassaro)

• 1266 Move to Pandas 1.x (1266) (@epassaro)

• 1235 test and fix for issue #1228 (1235) (@ebjordi)

v3.0.dev3497 (2020/08/07 11:26)

• 1267 Temporarily fetch refdata from GDrive (1267) (@epassaro)

• 1265 add GIT_LFS_SMUDGE (1265) (@kaushik94)

• 1262 Update package versions (1262) (@epassaro)

• 1263 Clean up status badge display (1263) (@chvogl)

• 1261 Add governance document (1261) (@wkerzendorf)

v3.0.dev3487 (2020/07/30 18:18)

• 1259 Emphasised reporting instructions in code of conduct (1259) (@harpolea)

• 1255 Pin pyne to v0.5 (1255) (@epassaro)

• 1213 Re-applied Black formatting to tardis after excluding undesired directories (1213) (@jaladh-singhal)

v3.0.dev3484 (2020/07/19 10:30)

• 1210 [MRG] Using Mamba in Pipelines (1210) (@kaushik94)

• 1237 Add new Contribution guidelines (1237) (@jaladh-singhal)

• 1238 code of conduct symlink (1238) (@wkerzendorf)

• 1234 TARDIS Code of Conduct (1234) (@wkerzendorf)

• 1233 Update of the Governance model (1233) (@wkerzendorf)

• 1231 Roadmap Documentation Page (1231) (@marxwillia)

• 1227 Restore caching to spectrum_integrated (1227) (@arjunsavel)

v3.0.dev3477 (2020/07/08 23:06)

• 1218 Move and rename coverage file (1218) (@arjunsavel)

• 1224 Added better mission statement (1224) (@ycamacho)

• 1190 Change pytestconfig to request.config (1190) (@epassaro)

• 1219 Update index.rst to add mission statement (1219) (@ycamacho)

v3.0.dev3472 (2020/06/27 16:11)

• 1203 Minor changes to the environment file and cleanup (1203) (@epassaro)

• 1209 add sashank27 ORCID ID (1209) (@sashank27)

• 1207 add git-blame-ignore for code style black Changes (1207) (@wkerzendorf)

• 1201 Code style black (1201) (@wkerzendorf)

• 1200 Add jaladh-singhal’s orcid to .orcid.csv (1200) (@jaladh-singhal)

• 1197 add arjun’s name to the ORCID list (1197) (@arjunsavel)

• 1166 Create a new subpackage for jupyter-widgets and add shell info widgets (1166) (@jaladh-singhal)

v3.0.dev3463 (2020/06/19 18:51)

• 1195 Fix badges in README.rst (1195) (@epassaro)

• 1193 Unpin astropy version (1193) (@epassaro)

• 1191 Add note to tell users which OS are supported (issue #1125) (1191) (@ebjordi)

• 1158 Make consistency edits to documentation (1158) (@arjunsavel)

v3.0.dev3459 (2020/06/12 14:01)

• 1185 Upgrade pytest version (1185) (@epassaro)

v3.0.dev3458 (2020/06/02 15:11)

• 1180 Remove test pipeline (1180) (@epassaro)

• 1153 update doc page to a notebook (1153) (@sashank27)

• 1150 Fix the Plasma tests (1150) (@wkerzendorf)

• 1178 Update mailmap (1178) (@epassaro)

• 1171 Print statement debug (1171) (@arjunsavel)

• 1165 Fix callbacks in run_tardis (1165) (@Rodot-)

v3.0.dev3448 (2020/05/28 13:08)

• 1173 Fix GUI and plasma tests (1173) (@marxwillia)

• 1168 Add checkpoint to PR template checklist (1168) (@harpolea)

• 1162 Fix broken pipelines (1162) (@epassaro)

v3.0.dev3442 (2020/05/21 19:34)

• 1159 Montecarlo/fix omp integrator (1159) (@Rodot-)

• 1155 CodeCov reintegration (1155) (@wkerzendorf)

• 1157 Update .mailmap (1157) (@epassaro)

v3.0.dev3439 (2020/05/20 09:25)

• 1142 Split release pipeline (1142) (@epassaro)

• 1151 Git ignored VSCode specific files (1151) (@jaladh-singhal)

• 1149 Made plot size larger in quickstart notebook (1149) (@jaladh-singhal)

• 1147 allow downloading of example file in quickstart (1147) (@sashank27)

• 1105 Add skip condition if QT_API is no set (issue #1101) (1105) (@marxwillia)

• 1143 Set manual trigger on file (compare refdata) (1143) (@marxwillia)

• 1144 add option to execute quickstart in build (1144) (@sashank27)

v3.0.dev3424 (2020/05/07 11:29)

• 1133 Solve pending issues of the release pipeline (1133) (@epassaro)

• 1141 fix warnings in quickstart (1141) (@sashank27)

• 1137 Increasing glob-like omission of coverage files (1137) (@arjunsavel)

• 1139 Added more file types to git ignore (1139) (@jaladh-singhal)

• 1134 Update mailmap (1134) (@orbitfold)

• 1135 Running tests on MacOS-10.14 (1135) (@orbitfold)

• 1285 Final numba PR (1285) (@arjunsavel)

• 1244 Fix numba_montecarlo virtual spectrum (1244) (@arjunsavel)

• 1136 Debugging relativity on numba_montecarlo (1136) (@arjunsavel)

• 1068 Migrate gui to PyQt5 (issue #988) (1068) (@ebjordi)

• 1085 Solves issue #680 for tardis.util.base (1085) (@marxwillia)

• 1055 renamed capmanager class functions to its new ones (1055) (@not4win)

• 1048 Re-activate TARDIS tests (1048) (@epassaro)

v3.0.dev3409 (2020/02/24 23:02)

• 1046 Updated zenodo.json (1046) (@epassaro)

• 1045 Fix file paths at diff step in release pipeline (1045) (@epassaro)

• 1040 Re-activate release job (1040) (@epassaro)

• 1039 Update .mailmap (1039) (@epassaro)

v3.0.dev3403 (2020/02/19 10:55)

• 1031 Create Zenodo JSON file (1031) (@epassaro)

• 1036 Update zenodo.json (1036) (@epassaro)

• 1035 Update .mailmap (1035) (@epassaro)

• 1034 Update .mailmap (1034) (@epassaro)

• 1032 Add Mark Magee to .mailmap (1032) (@epassaro)

• 1025 Add compilers to environment YAML file (1025) (@epassaro)

• 1026 Minor changes to Azure release (1026) (@epassaro)

3.0.dev3396 (2020/02/07 10:00)

• 1027 Added Mark Magee (1027) (@MarkMageeAstro)

• 1024 Add epassaro orcid (1024) (@epassaro)

• 1022 Added my orcid (1022) (@harpolea)

3.0.dev3384 (2020/02/02 16:56)

• 1021 Set cron job, disable CI and PR (1021) (@epassaro)

3.0.dev3383 (2020/02/02 14:01)

• 1015 Set up release TARDIS version with Azure Pipelines (1015) (@epassaro)

• 1020 Update .mailmap (1020) (@livnehra)

• 1018 Updated .mailmap (1018) (@epassaro)

• 1010 Pipeline for comparing reference data (1010) (@epassaro)

• 1016 Removed GH Action for release versions (1016) (@epassaro)

• 1013 Fixed typo in GH Action (1013) (@epassaro)

• 1006 Trying to get the right version number for automatic release (1006) (@epassaro)

• 1008 Improvements for the update_reference section [docs] (1008) (@epassaro)

• 1011 Gui fix (1011) (@marxwillia)

• 1009 Fix for packet source unit test (1009) (@epassaro)

• 1007 Fix for vboundary tests (1007) (@epassaro)

• 995 Checking failing tests on Azure (995) (@kaushik94)

• 1005 Automatic TARDIS releases (1005) (@epassaro)

• 1004 Fixed csvy abundance indexing bug (1004) (@marxwillia)

• 1003 Custom source packets (1003) (@marxwillia)

• 994 Large cleanup operation (994) (@wkerzendorf)

• 992 Changes made to documentation for update_refdata (992) (@kowal180)

• 967 log additional properties in hdf witeout when –with-vpacket-logging is present (967) (@kaushik94)

• 969 Fixes numpydoc for util (969) (@kowal180)

• 985 Fix typo (985) (@jreichenbach-msu)

• 983 Fix installation documentation (983) (@jreichenbach-msu)

• 982 Pinned numpy to v1.15 (982) (@epassaro)

• 978 Add further fix to quickstart link (978) (@jreichenbach-msu)

• 975 Add links to Quickstart (975) (@jreichenbach-msu)

• 971 Fix formal integral spikes bug (971) (@chvogl)

• 968 Fixed GUI #950 tardis/gui/widgets.py (968) (@marxwillia)

• 965 Isotope time0 (965) (@marxwillia)

• 966 fix AtomData repr (966) (@wkerzendorf)

• 964 Raise error if requested atoms are not in the atomic data (964) (@chvogl)

• 959 Csvy model config dict (959) (@marxwillia)

• 960 Save integrated spectrum to hdf if requested (960) (@chvogl)

• 957 add blondin converter (957) (@wkerzendorf)

• 956 Dilution factor fix (956) (@marxwillia)

• 953 add code comparison (953) (@wkerzendorf)

• 952 Base schema fix (952) (@marxwillia)

• 951 Documentation restructure (951) (@wkerzendorf)

• 936 csvy_model (936) (@wkerzendorf)

• 945 Revert “Remove PR Trigger” (945) (@wkerzendorf)

• 928 Added csvy parser (928) (@marxwillia)

• 933 Radiative recombination (933) (@chvogl)

v3.0-alpha.3 (2019/05/13 18:05)

• 930 Fix for conda-forge package (930) (@epassaro)

• 918 Density docs (918) (@marxwillia)

• 926 Adding a TARDIS data repo (926) (@wkerzendorf)

• 924 Migrate beta_sobolev calculation from cython to numba (924) (@chvogl)

• 925 Docs/fix changelog (925) (@wkerzendorf)

• 923 Fix nlte normalization (923) (@wkerzendorf)

• 831 Fix NLTE Normalization - issue #784 (831) (@livnehra)

• 922 Revert “Fix nlte normalization “ (922) (@wkerzendorf)

• 920 Fix nlte normalization (920) (@wkerzendorf)

• 921 Autoupdate changelog (921) (@wkerzendorf)

• 919 Add possibility to bias vpacket emission based on optical depth (919) (@chvogl)

• 914 make GUI python3 compatible (914) (@wkerzendorf)

• 902 general overhaul of the docs for 3.0 (902) (@wkerzendorf)

• 916 fix the documenation up a bit (916) (@wkerzendorf)

• 915 Parsing STELLA files for TARDIS (915) (@sarafina325)

• 911 Use Russian roulette to kill v-packets with negligible weight (911) (@chvogl)

• 697 Relativity (697) (@chvogl)

v3.0-alpha.2 (2019/03/11 10:24)

v3.0.a1 (2019/03/10 11:03)

• 901 .nojekyll added to docs (901) (@debajyotidasgupta)

• 897 add pytest azurepipelines (897) (@wkerzendorf)

• 896 Adding general build artefacts (896) (@wkerzendorf)

• 894 Azure pipeline for TARDIS (894) (@wkerzendorf)

• 893 add doctr to TARDIS (893) (@wkerzendorf)

• 892 adding azure-pipelines (892) (@wkerzendorf)

• 891 New template setup from astropy (891) (@wkerzendorf)

• 888 Update installation.rst (888) (@nileshpatra)

• 886 Pandas ix fix (886) (@wkerzendorf)

• 879 Python3 version of TARDIS (879) (@wkerzendorf)

• 881 Adds description of gcc problem to documentation (881) (@ycamacho)

• 859 Use interpolated values to do formal integral with more shells (859) (@chvogl)

• 873 Some small fixes related to the documentation and the building process (Fix #842) (873) (@unoebauer)

• 868 Add Travis Stages: Activate Integration tests (868) (@unoebauer)

• 866 Add Travis Caching and separate scripts for CI (866) (@wkerzendorf)

• 869 Travis update2 (869) (@wkerzendorf)

• 864 Unify unittest hdfs (864) (@unoebauer)

• 865 Adding CodeCov integration (865) (@wkerzendorf)

• 860 Enabling the addition of callbacks in run_tardis (860) (@wkerzendorf)

• 863 Thomson cross section: Continuation of PR #688 (863) (@unoebauer)

• 850 Add full test for formal integral method (850) (@unoebauer)

• 861 Describe refdata update and workflow refactor (861) (@wkerzendorf)

• 848 Add capability to store information about the plasma state during iterations (848) (@unoebauer)

• 857 Refactor logging (857) (@wkerzendorf)

• 856 Extend formal integral to line_interaction_type macroatom (856) (@chvogl)

• 855 Make the conda-forge channel the only channel (855) (@wkerzendorf)

• 853 Fix formal integral (853) (@chvogl)

• 849 Missing refdata (849) (@wkerzendorf)

• 851 add atomic data description (851) (@wkerzendorf)

• 846 update the OPENMP text to be correct (846) (@wkerzendorf)

• 847 Revert “change to new cython version” (847) (@wkerzendorf)

• 839 change to new cython version (839) (@wkerzendorf)

• 845 Update Documentation: new location of tardis_example (845) (@unoebauer)

• 843 Fix issue with custom_composition reader (843) (@unoebauer)

• 844 Remove bbsampling from schema file (844) (@pfreddy)

• 837 Add json sphinx (837) (@wkerzendorf)

• 841 Fixed indentation and position of delta_treatment in plasma/standard_plasmas.py (841) (@Heringer-Epson)

• 838 fix current cython installation problem (838) (@wkerzendorf)

• 821 Simplify convergence strategies (821) (@unoebauer)

• 833 restructure landing page to use notebooks (833) (@wkerzendorf)

• 832 Fixes #830 (832) (@unoebauer)

v2.0.2 (2018/06/18 16:24)

v2_test3 (2018/06/18 16:13)

• 829 build bleeding edge cython (829) (@wkerzendorf)

• 828 trying to get travis to build (828) (@wkerzendorf)

• 827 Update travis link to miniconda (827) (@unoebauer)

• 826 Remove tardis_example.tar.gz from documentation; fixes #824 (826) (@unoebauer)

• 820 update of mailmap (820) (@wkerzendorf)

• 819 Reintroduce and update changelog (819) (@unoebauer)

• 815 Update and Fix Documentation (815) (@unoebauer)

• 816 Remove old and broken badges (816) (@unoebauer)

• 814 Fix numpydoc problem (814) (@unoebauer)

• 813 Request specific sphinx version (813) (@unoebauer)

v2.0 (2018/04/05 09:03)

• 812 Update of documentation (812) (@unoebauer)

• 809 fix dependencies for tardis conda env (809) (@wkerzendorf)

• 761 Add caching for integrated spectrum: Fix #760 (761) (@wkerzendorf)

• 715 Merge ‘generate_reference_path’ and ‘reference_path’ in integration tests (bug #672) (715) (@wkerzendorf)

• 801 Decay of isotopes branch (801) (@wkerzendorf)

• 806 Fix reference dictionary problem (806) (@wkerzendorf)

• 802 Fix for PR #801 (802) (@wkerzendorf)

• 772 [TEP007] CMFGEN density parser (772) (@wkerzendorf)

• 771 [TEP007] Add cmfgen2tardis script (771) (@wkerzendorf)

• 757 [TEP007] Decay and merge isotopic abundance dataframe (757) (@wkerzendorf)

• 767 [TEP007] Docs for isotope config (767) (@wkerzendorf)

• 764 [TEP007] Isotope stratified file support (764) (@wkerzendorf)

• 762 [TEP007] Isotope uniform config option (762) (@wkerzendorf)

• 756 [TEP007] [WIP] Isotope Abundances class (756) (@wkerzendorf)

• 803 include yml files in MANIFEST (803) (@wkerzendorf)

• 799 tardis/plasma/standard_plasmas.py: old database files warning (799) (@wkerzendorf)

• 797 Minor Updates: Fixes for #521 and #699 (797) (@wkerzendorf)

• 796 Prevent pandas SettingWithCopyWarning by copying DataFrames when slicing (796) (@wkerzendorf)

• 795 Force deactivate LaTeX in GUI - Fix #441 (795) (@wkerzendorf)

• 793 Add pyside to requirements (needed for GUI) (793) (@wkerzendorf)

• 794 add new readthedocs.yml (794) (@wkerzendorf)

• 792 Fix compatibility with networkx 2.0 (792) (@wkerzendorf)

• 791 Propagate changes to the line index into the GUI code (791) (@wkerzendorf)

• 786 The final carsus merge (786) (@wkerzendorf)

• 782 Plasma write_to_tex/dot unit tests (782) (@wkerzendorf)

• 781 Omit coverage of test related files (781) (@wkerzendorf)

• 785 [DOC] Update Running tests doc (785) (@wkerzendorf)

• 774 Replace Comparison values in Plasma Unit Tests with reference HDF file (774) (@wkerzendorf)

• 780 LevelBoltzmannFactorNLTE.from_config is now a staticmethod (780) (@wkerzendorf)

• 778 Fix NLTE (778) (@wkerzendorf)

• 776 Fix compatibility bug in radiative_properties (776) (@wkerzendorf)

• 779 Save coverage report when tests use tardis-refdata (779) (@wkerzendorf)

• 775 Transition from atomic-dataset config option to tardis-refdata (775) (@wkerzendorf)

• 769 [TEP014] [DOC] Updated to_hdf notebook (769) (@wkerzendorf)

• 759 Formal Integral: including electron scattering (759) (@wkerzendorf)

• 768 [TEP014] Simulation HDF and deprecated to_hdf cleanup. (768) (@wkerzendorf)

• 773 Update Documentation (773) (@wkerzendorf)

• 752 [TEP014] PlasmaWriterMixin (752) (@wkerzendorf)

• 748 [TEP014] Update Runner and Spectrum classes to use HDFWriter + Unit Tests (748) (@wkerzendorf)

• 765 Attempt to fix up the GUI (765) (@wkerzendorf)

• 758 Add new version to tardis_env27 and add pyne (758) (@wkerzendorf)

• 753 [TEP014][DOC] HDFWriter Documentation (753) (@wkerzendorf)

• 740 [GSoC] Formal integral Project (740) (@wkerzendorf)

• 750 [TEP005][QOL] Add MontecarloRunner.spectrum_integrated (750) (@wkerzendorf)

• 745 [TEP005][DOC] Documentation (745) (@wkerzendorf)

• 746 [TEP005][CONFIG] Prevent incompatible configurations (746) (@wkerzendorf)

• 741 Add unit tests for the formal integral (741) (@wkerzendorf)

• 747 [TEP014] Update Model and Density classes to use HDFWriter + Unit Tests (747) (@wkerzendorf)

• 749 [TEP014] Change name of HDFWriter to HDFWriterMixin (749) (@wkerzendorf)

• 751 [QOL] Add default axis to TARDISSpectrum.plot (751) (@wkerzendorf)

• 743 Fix bug in plasma (743) (@wkerzendorf)

• 744 [TEP014] Added HDFWriter class + Unit Tests (744) (@wkerzendorf)

• 742 Fix clash in RTD dependencies (742) (@wkerzendorf)

• 735 Move common ctest fixtures into conftest.py (735) (@wkerzendorf)

• 729 Refactor spectrum (729) (@wkerzendorf)

• 730 Fix test_plasma_simple not skipping properly (730) (@wkerzendorf)

• 712 Colorize Logger (712) (@wkerzendorf)

• 718 Unit test for untested method of montecarlo simulation code (718) (@unoebauer)

• 724 Rebase PR #678 (724) (@wkerzendorf)

• 709 Add note about broken GUI to docu (709) (@wkerzendorf)

• 708 Add new installation instructions (708) (@wkerzendorf)

• 704 Fix ignoring model tests (704) (@wkerzendorf)

• 700 Add contributing guidelines (700) (@wkerzendorf)

• 686 converted spectrum_frequency (686) (@wkerzendorf)

• 696 Add missing diagnostics property to runner’s to_hdf list (696) (@wkerzendorf)

• 694 Significantly reduce peak memory usage when vpacket logging is enabled (694) (@wkerzendorf)

• 682 Import montecarlo.base in the init module of the package. (682) (@wkerzendorf)

• 670 Integrate continuum interactions into cmontecarlo (670) (@wkerzendorf)

• 652 [TEP006] Aggregate TARDIS restructure and configuration system cleanup (652) (@wkerzendorf)

• 677 Update link to tardis_example.yml in documentation - Fix #676 (677) (@wkerzendorf)

• 674 Change matplotlib backend - fix test_integration remote plotting issue (674) (@yeganer)

• 664 Kd final test (664) (@wkerzendorf)

• 668 change to tardis atom data on git lfs (668) (@wkerzendorf)

• 666 Remove News from main TARDIS github page (666) (@wkerzendorf)

• 667 Update SOCIS and GSOC students credits (667) (@wkerzendorf)

• 665 Add to_hdf compression (665) (@wkerzendorf)

• 663 Develop (663) (@wkerzendorf)

• 507 Unit tests for untested methods of tardis/util.py (507) (@)

• 657 Require pyyaml 3.12 (657) (@wkerzendorf)

• 659 Update installation docs (659) (@wkerzendorf)

• 653 Facility to provide per-setup atom data as well as save report locally. (653) (@wkerzendorf)

• 641 Fix detailed radiative rates (641) (@wkerzendorf)

• 642 Use pytest-html==1.10.0, modify DokuReport class accordingly. (642) (@wkerzendorf)

• 630 Create an overview page on Dokuwiki. (630) (@yeganer)

• 620 Runner script to automate execution of integration tests. (620) (@wkerzendorf)

• 628 Remove exponent property from yaml files with exponential density (628) (@wkerzendorf)

• 626 Revert “Add exponent as a property for exponential density” (626) (@wkerzendorf)

• 542 Updates to He NLTE treatment. (542) (@wkerzendorf)

• 612 Add facility to generate and accept HDF files as reference data for Integration Tests. (612) (@wkerzendorf)

• 614 Omit the integration_tests when running coveralls (614) (@wkerzendorf)

• 619 Fixed incorrect name in error message (619) (@wkerzendorf)

• 618 to_hdf: If only the last run is stored, do not add a counter in the name (618) (@wkerzendorf)

• 617 Add a to_hdf method on TARDISSpectrum (617) (@wkerzendorf)

• 600 Parametrize the Slow Test class with two setups. (600) (@wkerzendorf)

• 613 Fix bug in montecarlo.pyx (613) (@wkerzendorf)

• 595 Line absorption rate estimator (595) (@wkerzendorf)

• 606 Merge to_hdf (606) (@wkerzendorf)

• 597 Use abundances, densities filepaths relative to w7 config file. (597) (@wkerzendorf)

• 569 Added a conda environment for tardis (569) (@wkerzendorf)

• 565 Change the way AtomData quantities are initialized (565) (@wkerzendorf)

• 599 Update the tardis_example tar file provided in the documentation. (599) (@wkerzendorf)

• 598 Fix convergence handling in run_legacy_simulation - fix issue #593 (598) (@wkerzendorf)

• 590 Link images of comparison plots in DokuReport using hookwrapper. (590) (@wkerzendorf)

• 591 Fix path of CSS and JS files used in html report. (591) (@wkerzendorf)

• 594 Provide tardis.yaml_load shortcut (594) (@wkerzendorf)

• 592 Fix virt energy (592) (@wkerzendorf)

• 583 Subclass pytest-html’s HTMLReport to DokuReport class for report generation and upload. (583) (@yeganer)

• 588 Embed comparison plots in Dokuwiki Report. (588) (@)

• 587 Move the three spectra attributes from Radial1DModel to MontecarloRunner (587) (@wkerzendorf)

• 578 Shift slow test related pytest hooks in lower level conftest.py (578) (@)

• 581 Update several files to match package_template (581) (@yeganer)

• 576 [config-system] Validator rewrite: Use jsonschema (576) (@wkerzendorf)

• 549 [TEP006] Create a JSON schema in YAML to replace the old tardis_config_definition.yml (549) (@ftsamis)

• 575 Replace misused calls to yaml.load with a helper function. (575) (@wkerzendorf)

• 570 Enable generation of html report of integration tests, and upload to dokuwiki. (570) (@wkerzendorf)

• 574 tardis/base.py: Remove duplicate code from run_tardis (574) (@wkerzendorf)

• 573 io/util.py (YAMLLoader): Use OrderedDict to store loaded YAML (573) (@wkerzendorf)

• 572 Change the way YAMLLoader resolves some properties (572) (@wkerzendorf)

• 532 Documentation overhaul (532) (@wkerzendorf)

• 571 [config] Set the exponent property as mandatory when density is exponential (571) (@ftsamis)

• 566 Initial laydown of comparison plots for TestW7. (566) (@)

• 567 Accept keyword arguments for Configuration.from_yaml (567) (@wkerzendorf)

• 561 TestW7: Assertions for spectrum quantities, fixture for handling baseline data. (561) (@wkerzendorf)

• 515 [config-system] Add a custom YAML Loader to parse astropy quantities (515) (@wkerzendorf)

• 555 Use pytest’s monkeypatch.chdir to change the working directory in the config_reader tests (555) (@wkerzendorf)

• 558 Integration Test class for Stratified W7 setup. (558) (@wkerzendorf)

• 557 Enable skipping slow tests. (557) (@unoebauer)

• 544 Continue cmontecarlo tests refactor. Extend #530. (544) (@unoebauer)

• 543 Fix issue #535: Treat rel. paths inside config relative to the config file (543) (@wkerzendorf)

• 551 Add SOCIS 2016 advertisement (551) (@wkerzendorf)

• 547 Fix Issue #548 (547) (@wkerzendorf)

• 545 added mailmap to compile the commits for each person (545) (@wkerzendorf)

• 539 Adding OSX to our travis build (539) (@wkerzendorf)

• 541 Move progress bar update after calculation (541) (@yeganer)

• 540 Mirroring C enums in Python for CMontecarlo tests. (540) (@yeganer)

• 538 Upgrading to the new Readthedocs infrastructure (538) (@wkerzendorf)

• 530 Refactor cmontecarlo tests for exercising parametrization. (530) (@yeganer)

• 537 Ignore invalid OpenMP nthreads values (537) (@yeganer)

• 527 Unit tests for untested methods of tardis/atomic.py (527) (@)

• 533 Remove rpacket.recently_crossed_boundary flag (533) (@wkerzendorf)

• 514 Performance (514) (@wkerzendorf)

• 531 Organize headers in C-Extension (531) (@wkerzendorf)

• 526 Docs: Include conda-requirements in installation.rst (526) (@ssim)

v1.0.1 (2015/03/03 08:12)

v1.0 (2015/03/03 07:58)

1.0rc3 (2015/03/03 07:54)

v1.0rc3 (2015/02/19 09:40)

0.9.2 (2014/06/12 19:37)

0.9.1 (2014/02/03 20:51)

v0.9a (2013/02/14 16:15)