Changelog¶

release-2024.07.07 (2024/07/06 20:49)¶

2692 Pre-release 2024.07.07 (2692) (@tardis-bot)
2656 fix benchmark action (2656) (@officialasishkumar)
2684 Fix hdf path for time_of_simulation in sdec plot (2684) (@sarthak-dv)
2652 I/O Refactoring (2652) (@andrewfullard)
2666 Add Ruff to TARDIS Environment (2666) (@atharva-2001)
2629 Updating github changes command in post release workflow (changelog fix) (2629) (@KasukabeDefenceForce)
2665 Fix benchmarks errors (2665) (@KasukabeDefenceForce)
2669 Updating “Environment update” section in tardis docs (2669) (@KasukabeDefenceForce)
2668 Adding analytics to tardis documentation (2668) (@KasukabeDefenceForce)
2609 [Restructure/plasma] Initial Opacities Refactor (2609) (@wkerzendorf)
2659 Update Ruff Config (2659) (@atharva-2001)

release-2024.06.09 (2024/06/08 20:52)¶

2649 Pre-release 2024.06.09 (2649) (@tardis-bot)
2647 Move rpacket_trackers_to_dataframe function to packet_trackers.py file (2647) (@Sumit112192)
2608 Refactoring of Monte Carlo transport (2608) (@andrewfullard)
2518 Convergence restructure (2518) (@andrewfullard)
2641 Update Lock Files 2024 (2641) (@atharva-2001)
2638 Move RPacketTracker class to a new file packet_trackers.py (2638) (@Sumit112192)
2630 Added HDF documentation. (2630) (@airvzxf)
2573 Bugfix: Added a conditional statement and changed the error type that was being handled in tardis.io.model_reader.read_uniform_abundances. (2573) (@KC210404)
2631 Edit Generation Tests (2631) (@atharva-2001)

release-2024.06.03 (2024/06/03 08:25)¶

2639 Pre-release 2024.06.02 (2639) (@tardis-bot)
2628 Updating actions to their latest version (2628) (@KasukabeDefenceForce)
2633 Fixed the imported modules. (2633) (@airvzxf)
2632 Removing checkout to the tardis repo step from setup lfs workflow (2632) (@KasukabeDefenceForce)

release-2024.05.28 (2024/05/28 06:24)¶

2627 Pre-release 2024.05.26 (2627) (@tardis-bot)
2624 Updating the docs to use local atomic data (2624) (@KasukabeDefenceForce)
2607 Remove DokuWiki Code (2607) (@atharva-2001)
2584 PacketSource should contain .to_hdf() method (2584) (@atharva-2001)
2603 NumberDensity as Input to plasma (2603) (@wkerzendorf)
2623 Revert “Updating the worfklow to use atomic data from cache rather th… (2623) (@KasukabeDefenceForce)
2621 Fixing PR checkout in build docs job (2621) (@KasukabeDefenceForce)
2618 Fixing build docs yaml to detect branches on forks (2618) (@KasukabeDefenceForce)
2619 Fixed #2564 by bringing back the image from a previous commit (2619) (@Sumit112192)
2611 Converted the reference data to regression in test TARDIS full (2611) (@airvzxf)

release-2024.05.12 (2024/05/11 21:05)¶

2614 Pre-release 2024.05.12 (2614) (@tardis-bot)
2587 Trigger docs only when something inside the docs folder changed (2587) (@KasukabeDefenceForce)
2560 Bug t radiative (2560) (@Sumit112192)
2610 LFS submodule error fix (2610) (@atharva-2001)
2605 Move montecarlo to transport and flatten montecarlo numba (2605) (@andrewfullard)
2565 GSoC 2024 | Benchmark | First objective | Israel Roldan (2565) (@airvzxf)

release-2024.05.05 (2024/05/04 20:56)¶

2606 Pre-release 2024.05.05 (2606) (@tardis-bot)
2561 Documentation typo (2561) (@Sumit112192)
2598 Only Run Benchmarks Workflow When Owner is tardis-sn (2598) (@atharva-2001)
2589 Solve Duplicate Code in GitHub Action Workflows (2589) (@atharva-2001)
2528 Convergence plot correction: Use step plots (2528) (@sarthak-dv)
2546 Gamma-ray packet source refactor (2546) (@andrewfullard)
2577 Abundance widget bug fix (2577) (@Sumit112192)
2597 Modify Update Refdata to Push Regression Data Changes (2597) (@atharva-2001)
2595 Fixes IntegrationError causing refdata generation failure (2595) (@andrewfullard)
2562 Reference Data Generation Fixes (2562) (@atharva-2001)

release-2024.04.21 (2024/04/20 20:45)¶

2593 Pre-release 2024.04.21 (2593) (@tardis-bot)
2525 Montecarlo configuration refactor (2525) (@andrewfullard)
2578 Updating embedded links in docs with new file names “tutorial_” and “how_to_” (2578) (@erinvisser)
2509 Precommit (2509) (@ntchen)
2580 Removing flake8 job. (2580) (@KasukabeDefenceForce)

release-2024.04.14 (2024/04/13 20:54)¶

2583 Pre-release 2024.04.14 (2583) (@tardis-bot)
2328 Grotrian diagram IPyWidget functionality (2328) (@AyushiDaksh)

release-2024.04.08 (2024/04/08 09:41)¶

2576 Pre-release 2024.04.07 (2576) (@tardis-bot)
2563 Recategorizing tutorials as how-to guides to follow diataxis structure (2563) (@erinvisser)
2542 Consistent units in packet source (2542) (@andrewfullard)
2574 Updated helium nlte page in docs with in-text citation (2574) (@erinvisser)
2552 Multiindex dataframe (2552) (@Knights-Templars)

release-2024.04.01 (2024/04/01 10:03)¶

2566 Pre-release 2024.03.31 (2566) (@tardis-bot)
2349 Implemented Model Reader for CMFGen example (Also refactored Stella Reader) (2349) (@xansh)
2554 Remove Azure Compare Refdata Pipeline (2554) (@atharva-2001)
2555 corrected blackbody luminosity density equation (2555) (@CePowers)
2556 fixing typos, including pytest issue (2556) (@erinvisser)
2535 Path.replace bug (2535) (@Sumit112192)
2553 Fix Cache IDs in Tests Workflow (2553) (@atharva-2001)

release-2024.03.18 (2024/03/18 09:58)¶

2551 Pre-release 2024.03.17 (2551) (@tardis-bot)
2253 Fix for widgets displaying code in commandline (2253) (@shreyas3156)
2529 PR to separate main gamma ray loop (2529) (@Knights-Templars)
2541 Fix units for virtual packet properties in MonteCarloTransportState (2541) (@sarthak-dv)
2533 Fix broken URL in generating_widgets.ipynb (2533) (@sarthak-dv)

release-2024.03.11 (2024/03/11 09:31)¶

2536 Pre-release 2024.03.10 (2536) (@tardis-bot)
2522 prevent float overflow when calculating He I population (2522) (@DeerWhale)
2524 Update index.rst (2524) (@wkerzendorf)

release-2024.02.19 (2024/02/19 09:21)¶

2521 Pre-release 2024.02.18 (2521) (@tardis-bot)
2520 update the lock file link in doc (2520) (@DeerWhale)

release-2024.02.11 (2024/02/10 19:45)¶

2517 Pre-release 2024.02.11 (2517) (@tardis-bot)
2460 update installation documentation for tardis (2460) (@erinvisser)
2516 fixed the difference between the power of pi in code and function above (2516) (@erinvisser)
2504 Update number of shells in SimulationState (2504) (@DeerWhale)
2501 Fix/nlte ionization matrix (2501) (@wkerzendorf)
2512 Estimators restructure cleanup (2512) (@andrewfullard)
2492 Restructure/separate transport state (2492) (@wkerzendorf)
2506 Remove workflow file that installs TARDIS using conda (2506) (@atharva-2001)
2476 Restructure/transport solver (2476) (@wkerzendorf)

release-2024.01.14 (2024/01/14 10:26)¶

2503 Pre-release 2024.01.14 (2503) (@tardis-bot)

release-2024.01.08 (2024/01/08 09:37)¶

2502 Pre-release 2024.01.07 (2502) (@tardis-bot)
2473 A syrupy replacement (2473) (@wkerzendorf)
2474 Restructure radiation field (2474) (@wkerzendorf)
2455 Use Mamba Instead of Conda When Running Benchmarks (2455) (@atharva-2001)
2490 Fix viz sdec (2490) (@AlexHls)
2445 Restructure/abundance (2445) (@wkerzendorf)
2479 Check if atom data download exists (2479) (@wkerzendorf)
2448 Decay energy chain (2448) (@Knights-Templars)
2478 Add ruff rules and docs (2478) (@AlexHls)
2459 Update plasma configuration documentation (2459) (@AlexHls)

release-2023.11.26 (2023/11/26 10:41)¶

2477 Pre-release 2023.11.26 (2477) (@tardis-bot)
2471 Reading in decay radiation data in atom data (2471) (@Knights-Templars)
2470 Add astropy import guard (2470) (@AlexHls)
2413 Tests Plasma Using Syrupy (2413) (@atharva-2001)

release-2023.11.05 (2023/11/04 22:34)¶

2466 Pre-release 2023.11.05 (2466) (@tardis-bot)
2461 NLTE Ionization solver polish (2461) (@AlexHls)
2462 Update docstr-cov.yml to fix failing action (2462) (@andrewfullard)
2458 Enable nlte ionization as plasma component (2458) (@AlexHls)
2453 Fix bug in relativistic packet source (2453) (@chvogl)
2457 Add verbose assert to NLTE rate equation (2457) (@AlexHls)

release-2023.10.20 (2023/10/20 09:48)¶

2452 Pre-release 2023.10.20 (2452) (@tardis-bot)
2432 Remove lock file creation from pre release workflow (2432) (@atharva-2001)
2450 Add FAQ section to documentation (2450) (@AlexHls)
2422 restructure of geometry (2422) (@wkerzendorf)
2441 Change glob patterns in setup.cfg (2441) (@atharva-2001)
2447 Fix numba parallel issues (2447) (@AlexHls)
2443 Fix duplicate entries in continuum line list (2443) (@AlexHls)
2434 Added a function to calculate shell masses (2434) (@Knights-Templars)
2425 Modified how setup input energy takes isotope name. Earlier it was ga… (2425) (@Knights-Templars)
2428 add linelist exposure to atom data and reader, built on current (2428) (@jvshields)
2426 Disabled formal integral for continuum interaction (2426) (@AlexHls)
2424 Ignore tests in docstr coverage (2424) (@atharva-2001)
2421 rename simulation_state2 (2421) (@wkerzendorf)
2417 rename RadialModel1D to SimulationState (2417) (@wkerzendorf)
2415 In gamma ray code : Changed times to np.geomspace (2415) (@Knights-Templars)
2410 upgrading env in 2022 (2410) (@wkerzendorf)

release-2023.09.17 (2023/09/16 20:51)¶

2411 Pre-release 2023.09.17 (2411) (@tardis-bot)
2407 Allow Simulation Tests to Run Independently (2407) (@atharva-2001)

release-2023.09.10 (2023/09/09 22:43)¶

2408 Pre-release 2023.09.10 (2408) (@tardis-bot)
2288 Add documentation for LFS caching, The Bridge and Save Atomic Files Workflow (2288) (@atharva-2001)

release-2023.09.03 (2023/09/02 20:47)¶

2406 Pre-release 2023.09.03 (2406) (@tardis-bot)
2393 Restructure readers (2393) (@wkerzendorf)
2404 Pin Sphinx to <= 7.1 (2404) (@atharva-2001)
2403 Reading fully ionized species with species_string_to_tuple (2403) (@sonachitchyan)
2398 Disable Parallelization (2398) (@atharva-2001)
2401 asv run continue on error (2401) (@atharva-2001)
2399 Update documentation about the parallelization problem (2399) (@atharva-2001)
2400 Add __init__.py in radiation_field subpackage (2400) (@atharva-2001)
2396 Fix for Slack message (2396) (@epassaro)

release-2023.08.20 (2023/08/19 20:43)¶

2397 Pre-release 2023.08.20 (2397) (@tardis-bot)
2338 Test conda-forge package installation (2338) (@epassaro)
2224 Fix references and typos in documentation (2224) (@shreyas3156)
2385 Creating collisional excitation/deexcitation coefficient matrix for NLTE excitation treatment (2385) (@sonachitchyan)
2142 added documentation for using particular refdata files for unit testing (2142) (@jayantbhakar)
2395 Fixing the shape of the solution vector to be accurate in NLTE excitation treatment (2395) (@sonachitchyan)
2353 Benchmarks Comments and Atom Data Cache BugFix (2353) (@atharva-2001)
2386 Integrate density in state object (2386) (@wkerzendorf)
2392 Post-release 2023.08.13 (2392) (@tardis-bot)

release-2023.08.13 (2023/08/13 17:04)¶

2391 Pre-release 2023.08.13 (2391) (@tardis-bot)
2379 Tests for doppler factor functions (2379) (@sonachitchyan)
2348 Fixes gamma-ray notebook to run more easily (2348) (@andrewfullard)
2381 Removed hardcoding of RPacket radius (2381) (@xansh)
2384 Post-release 2023.08.06 (2384) (@tardis-bot)

release-2023.08.06 (2023/08/05 20:43)¶

2383 Pre-release 2023.08.06 (2383) (@tardis-bot)
2382 Remove outdated docstring from test_montecarlo.py (2382) (@chvogl)
2376 Add init.py to energy input module (2376) (@andrewfullard)
2373 Post-release 2023.07.30 (2373) (@tardis-bot)

release-2023.07.30 (2023/07/29 20:47)¶

2372 Pre-release 2023.07.30 (2372) (@tardis-bot)
2365 integrate radiation field (2365) (@wkerzendorf)
2371 Prevent empty convergence plot Error when n_iteration=1 (2371) (@DeerWhale)
2369 Post-release 2023.07.23 (2369) (@tardis-bot)

release-2023.07.23 (2023/07/23 10:47)¶

2368 Pre-release 2023.07.23 (2368) (@tardis-bot)
2367 integrate new packetsource (2367) (@wkerzendorf)
2366 New packet source (extending 2352) (2366) (@wkerzendorf)
2354 removed duplicate entry of afloers (2354) (@afloers)
2360 restructure configuration object (2360) (@wkerzendorf)
2361 add deprecated decorator (2361) (@wkerzendorf)
2359 Rename NumbaPlasma to OpacityState (2359) (@andrewfullard)
2313 Grotrian Diagram Plot Appearance (2313) (@AyushiDaksh)
2357 Post-release 2023.07.16 (2357) (@tardis-bot)

release-2023.07.16 (2023/07/16 15:15)¶

2356 Pre-release 2023.07.16 (2356) (@tardis-bot)
2355 Fixed spelling mistake in Wien’s displacement law (2355) (@afloers)
2351 Post-release 2023.07.09 (2351) (@tardis-bot)

release-2023.07.09 (2023/07/09 12:30)¶

2350 Pre-release 2023.07.09 (2350) (@tardis-bot)
2347 Fix frame transformations of continuum opacity (2347) (@chvogl)
2139 Gamma ray refactor (2139) (@andrewfullard)
2327 Refactor Model Reader on the Stella example (2327) (@wkerzendorf)
2346 Post-release 2023.07.02 (2346) (@tardis-bot)

release-2023.07.02 (2023/07/01 20:49)¶

2345 Pre-release 2023.07.02 (2345) (@tardis-bot)
2344 Make MontecarloTransport and montecarlo_numba track the last line interaction shell ids for real and virtual packets (2344) (@AyushiDaksh)
2343 Rename RPacketTracker.interact_id to RPacketTracker.num_interactions (2343) (@AyushiDaksh)
2221 Fix typos in repository (2221) (@AyushiDaksh)
2330 Benchmarks Push To Repo Bug Fix (2330) (@atharva-2001)
2335 Dispatch Compare Refdata Event to Refdata Repo (2335) (@atharva-2001)
2305 Fix to helium indexing in NLTE (2305) (@aoifeboyle)
2341 Remove duplicated continuum interaction code (2341) (@chvogl)
2340 Post-release 2023.06.25 (2340) (@tardis-bot)

release-2023.06.25 (2023/06/25 12:43)¶

2339 Pre-release 2023.06.25 (2339) (@tardis-bot)
2337 Separate the last iteration from Simulation.run() (2337) (@xansh)
2219 Remove dead (unused) fixtures (2219) (@xansh)
2336 Fix doc failure after restructuring packet source seed (2336) (@xansh)
2329 Move packet seeds logic into PacketSource instead of MontecarloTransport (2329) (@xansh)
2326 Track bf and ff opacities with vpackets (2326) (@ymatsumu)
2334 Post-release 2023.06.18 (2334) (@tardis-bot)

release-2023.06.18 (2023/06/17 20:48)¶

2333 Pre-release 2023.06.18 (2333) (@tardis-bot)
2311 Make nthreads a property of MontecarloRunner instead of Simulation class (2311) (@xansh)
2260 [WIP] Basic Benchmarks Using ASV (2260) (@atharva-2001)
2317 Rename MontecarloRunner to MontecarloTransport (2317) (@xansh)
2307 Post-release 2023.06.04 (2307) (@tardis-bot)

release-2023.06.04 (2023/06/03 20:53)¶

2306 Pre-release 2023.06.04 (2306) (@tardis-bot)
2302 Disable HDF5 file locking on documentation workflow (2302) (@epassaro)
2300 Post-release 2023.05.28 (2300) (@tardis-bot)

release-2023.05.28 (2023/05/27 20:51)¶

2299 Pre-release 2023.05.28 (2299) (@tardis-bot)
2298 Bump hdf5 to v1.12 (2298) (@epassaro)
2297 Post-release 2023.05.21 (2297) (@tardis-bot)

release-2023.05.21 (2023/05/20 20:53)¶

2296 Pre-release 2023.05.21 (2296) (@tardis-bot)
2295 Post-release 2023.05.15 (2295) (@tardis-bot)

release-2023.05.15 (2023/05/15 10:10)¶

2294 Pre-release 2023.05.14 (2294) (@tardis-bot)
2290 Post-release 2023.05.07 (2290) (@tardis-bot)

release-2023.05.07 (2023/05/07 13:47)¶

2289 Pre-release 2023.05.07 (2289) (@tardis-bot)
2201 Changing construction of the first guess and coefficient matrices in NLTE solver (2201) (@sonachitchyan)
2287 Post-release 2023.04.30 (2287) (@tardis-bot)

release-2023.04.30 (2023/04/30 13:26)¶

2286 Pre-release 2023.04.30 (2286) (@tardis-bot)
2284 Save LFS Objects always() (2284) (@atharva-2001)
2280 Prevent tests from running on forks (2280) (@atharva-2001)
2283 Post-release 2023.04.23 (2283) (@tardis-bot)

release-2023.04.23 (2023/04/22 20:49)¶

2282 Pre-release 2023.04.23 (2282) (@tardis-bot)
2121 adding nonhomologous_grid.py (2121) (@sonachitchyan)
2278 Post-release 2023.04.16 (2278) (@tardis-bot)

release-2023.04.16 (2023/04/15 20:47)¶

2277 Pre-release 2023.04.16 (2277) (@tardis-bot)
2267 Check MD5 sums of downloaded atom data (2267) (@epassaro)
2273 Fixes for update reference data workflow (2273) (@epassaro)
2275 Post-release 2023.04.09 (2275) (@tardis-bot)

release-2023.04.09 (2023/04/08 20:44)¶

2274 Pre-release 2023.04.09 (2274) (@tardis-bot)
2249 Port update reference data pipeline to GitHub Actions (2249) (@epassaro)
2233 Added documentation for parallel fixes for estimators (2233) (@1e9abhi1e10)
2250 Arepo mass average fix (2250) (@AlexHls)
2257 Post-release 2023.03.26 (2257) (@tardis-bot)

release-2023.03.26 (2023/03/26 01:55)¶

2256 Pre-release 2023.03.26 (2256) (@tardis-bot)
2248 Post-release 2023.03.20 (2248) (@tardis-bot)

release-2023.03.20 (2023/03/20 12:39)¶

2247 Pre-release 2023.03.20 (2247) (@tardis-bot)
2246 Fix team reviewers on workflows (2246) (@epassaro)
2237 MonteCarlo packet progress bar completes to 100% (2237) (@shreyas3156)
2243 Fix for release dates (2243) (@epassaro)
2242 Fix for automerge (2242) (@epassaro)
2236 Docs Fix: Download Atom Data in rpacket_tracking.ipynb (2236) (@atharva-2001)
2204 Add docstrings to subpackages (2204) (@PommesFrittes)
2223 Post-release 2023.02.27 (2223) (@tardis-bot)

release-2023.02.27 (2023/02/27 08:53)¶

2222 Pre-release 2023.02.26 (2222) (@tardis-bot)
2214 Correct the description of ‘no_of_packets’ in Monte Carlo Configuration (2214) (@1e9abhi1e10)
2213 Post-release 2023.02.20 (2213) (@tardis-bot)
2194 Cache LFS objects in the tests workflow (2194) (@atharva-2001)

release-2023.02.2 (2023/02/20 10:04)¶

2211 Pre-release 2023.02.19 (2211) (@tardis-bot)
2210 Post-release 2023.02.16 (2210) (@tardis-bot)

release-2023.02.16 (2023/02/16 09:18)¶

2208 Pre-release 2023.02.12 (2208) (@tardis-bot)
2190 Add version tag to simulation objects (2190) (@krimmskramms)
2206 Post-release 2023.02.06 (2206) (@tardis-bot)

release-2023.02.06 (2023/02/06 10:00)¶

2205 Pre-release 2023.02.05 (2205) (@tardis-bot)
2200 Fix config reader tests (2200) (@chvogl)
2195 Reading nlte_excitation_species from config (2195) (@sonachitchyan)
2198 Fixing test_store_runner_to_hdf (2198) (@sonachitchyan)
2185 Rename T variables to temperature (2185) (@1e9abhi1e10)
2171 Adding nlte solver (2171) (@sonachitchyan)
2187 Downloading nlte_atom_data in ref data (2187) (@sonachitchyan)
2188 Post-release 2023.01.11 (2188) (@tardis-bot)

release-2023.01.11 (2023/01/11 11:25)¶

2186 Pre-release 2023.01.08 (2186) (@tardis-bot)
2182 Post-release 2022.12.26 (2182) (@tardis-bot)

release-2022.12.26 (2022/12/26 09:51)¶

2180 Pre-release 2022.12.25 (2180) (@tardis-bot)
2170 Add missing init.py files to transport and geometry subpackages (2170) (@epassaro)
2173 Post-release 2022.12.12 (2173) (@tardis-bot)

release-2022.12.12 (2022/12/12 10:02)¶

2172 Pre-release 2022.12.11 (2172) (@tardis-bot)
2150 Kilonova missing zeta (2150) (@gleck97)
2158 NLTE jacobian matrix (2158) (@sonachitchyan)
2154 Fixing typos for nlte ion (2154) (@sonachitchyan)
2159 Fix relativistic packet initialization (2159) (@chvogl)

release-2022.11.21 (2022/11/21 10:15)¶

2160 Pre-release 2022.11.20 (2160) (@tardis-bot)
2156 Post-release 2022.11.17 (2156) (@tardis-bot)

release-2022.11.17 (2022/11/17 13:45)¶

2155 Pre-release 2022.11.17 (2155) (@tardis-bot)
2152 Set specific qgrid feedstock version (2152) (@andrewfullard)
2140 Adding nlte_rate_equation_solver.py (2140) (@sonachitchyan)
2147 Pin setuptools_scm to v6 (2147) (@epassaro)
2127 Possible fix for prerelease workflow (2127) (@andrewfullard)
2146 Add missing cell to download atom data (2146) (@epassaro)
2136 Restructuring NumbaModel (2136) (@satwik-kambham)
2132 Adding rate matrix index (2132) (@sonachitchyan)
2130 moved helium nlte to a seperate file helium_nlte.py (2130) (@sonachitchyan)
2124 Cleaning model state (2124) (@satwik-kambham)
2096 Small bug fix for He NLTE. (2096) (@)
1923 Fixing latex_label Parameter within write_to_tex function (1923) (@bartnikm)
2095 Removing outdated documentation and creating developer tools section (2095) (@isaacgsmith)
2099 Arbitrary isotope decay handling and positronium (2099) (@andrewfullard)
2118 Integrating experimental model state (2118) (@satwik-kambham)
2120 Update arepo docs notebook to be pre-run (2120) (@AlexHls)
2115 added docs for montecarlo packet visualization (2115) (@jayantbhakar)
2117 Runs cells in arepo notebook to avoid downloading files (2117) (@andrewfullard)
2103 New geometry class (2103) (@satwik-kambham)
2111 New TARDIS flowchart and cleaning up physics walkthrough (2111) (@isaacgsmith)
2098 New Composition Class (2098) (@satwik-kambham)
2108 Rework Estimators and Convergence Docs (2108) (@isaacgsmith)
2105 Documentation for Features In-Progress (2105) (@isaacgsmith)
2107 Added positronium notes (2107) (@andrewfullard)
2091 Added interaction type in rpacket_tracker (2091) (@jayantbhakar)
2110 removed scatter function from interaction.py (2110) (@sonachitchyan)
2106 Resturcture ABCs import from collections module (2106) (@blackbird7112)
2093 Fixing Docs Warnings (2093) (@isaacgsmith)
2073 rpacket_tracker returns dataframe (2073) (@jayantbhakar)
2104 Re-produced PR 1826 (2104) (@andrewfullard)
2097 Creating new docs building instructions (2097) (@isaacgsmith)
2088 Arepo docs fix (2088) (@AlexHls)
1941 Improved arepo parser (1941) (@AlexHls)
2026 Adding physics introduction to documentation (2026) (@isaacgsmith)
2084 Fix broken links in workflow files and goverance md (2084) (@blackbird7112)
2083 Moved trace_packet to tardis tansport (2083) (@Rodot-)
2082 Added documetation on how to compare environment before update (2082) (@jaladh-singhal)
2076 Modified Function Name in Config validator according to PEP8 (2076) (@blackbird7112)
2062 Remove yaml_load_config_file (2062) (@aman1971)
2052 Created a smart HDF Reader which can re-produce simulation object (2052) (@satwik-kambham)
2070 Pre-release 2022.06.26 (2070) (@tardis-bot)
2069 Wait for pull request creation (2069) (@epassaro)
2067 Begin geometry subfolder (2067) (@nolanbrown01)
2050 Update Jsonschema package to V4 (2050) (@blackbird7112)
2065 Continuing geometry restructure (2065) (@nolanbrown01)
2063 Initial geometry restructure (2063) (@nolanbrown01)
2061 Post-release 2022.06.19 (2061) (@tardis-bot)

release-2022.06.19 (2022/06/18 22:25)¶

2060 Pre-release 2022.06.19 (2060) (@tardis-bot)
2036 Restructure code to remove the single_packet_seed field (2036) (@blackbird7112)
2054 Auto-merge fixes (2054) (@epassaro)
2053 Change developer installation command (2053) (@epassaro)
2048 Disable profiling page build on pull requests (2048) (@epassaro)
2042 Polish up Quickstart guide (2042) (@epassaro)
2010 Enable automerge on pre and post-release workflows (2010) (@epassaro)
2046 Stop redirecting docs page (2046) (@epassaro)
2045 Add DOI badge to credits section (2045) (@epassaro)
2047 Ignore gamma-ray deposition notebook for now (2047) (@andrewfullard)
1698 Gamma ray propagation (1698) (@andrewfullard)
2044 Post-release 2022.06.05 (2044) (@tardis-bot)

release-2022.06.05 (2022/06/04 21:07)¶

2043 Pre-release 2022.06.05 (2043) (@tardis-bot)
2039 Check PEP8 on CI (2039) (@epassaro)
2037 Update README.rst in post-release (2037) (@epassaro)
2024 Added v_inner and v_outer, enable_nonhomologous_expansion for future use in nonhomologous expansion (2024) (@sonachitchyan)
2038 Fix bot aliases in .mailmap (2038) (@epassaro)
2027 Switch from docstr-coverage package to interrogate in CI pipelines (2027) (@epassaro)
2020 Fixes for CITATION.cff (2020) (@epassaro)
2033 Merge all CI users on .mailmap (2033) (@epassaro)
2028 Rebuild installation page (2028) (@epassaro)
1921 Formal integral documentation (1921) (@isaacgsmith)
2030 Fix estimators parallel (2030) (@Rodot-)
2019 Added compatability to current version of carsus atomic data (2019) (@Rodot-)
2011 Build and cache conda environments with lockfiles (2011) (@epassaro)
1991 Re-write download_from_url using Astropy’s download_file (1991) (@epassaro)
1992 Fix low temperature problem of Van Regemorter approximation (1992) (@chvogl)
2018 Post-release 2022.05.08 (2018) (@tardis-bot)

release-2022.05.08 (2022/05/07 20:27)¶

2016 Pre-release 2022.05.08 (2016) (@tardis-bot)
1996 Fixes for compare-refdata pipeline (1996) (@epassaro)
2012 Fix post-release workflow automation (2012) (@epassaro)
2007 Use pull_request_target trigger in release workflow (2007) (@epassaro)
2008 Move link_t_rad_t_electron to config file (2008) (@sonachitchyan)
2009 Revert “Removing Levels Index Variable Within Atomic Data Preperation” (2009) (@Rodot-)
2006 Post-release 2022.05.04 (2006) (@tardis-bot)

release-2022.05.04 (2022/05/04 12:35)¶

2005 Pre-release 2022.05.04 (2005) (@tardis-bot)
2003 Fix for isotope abundance parsing (2003) (@Rodot-)
1995 Force constant version date length (1995) (@epassaro)
1999 Create TARDIS release workflow (1999) (@epassaro)
2001 Post-release workflow (2001) (@epassaro)
2000 Make docs build in parallel (2000) (@isaacgsmith)
1998 Fix concurrency groups in workflows (1998) (@epassaro)
1987 Better documentation build workflow from 2021 GA Hackathon (1987) (@epassaro)
1989 Pre-release workflow (1989) (@epassaro)
1988 Use Azure mirror for reference data in testing pipeline (1988) (@epassaro)
1978 Plasma number densities using isotopes (1978) (@andrewfullard)
1985 Migrate testing pipeline to GitHub Actions (1985) (@epassaro)
1981 Better docstring coverage workflow from 2021 GA Hackathon (1981) (@epassaro)
1980 Check Black format on master branch (1980) (@epassaro)
1982 Add bot comment with directions to update .mailmap (1982) (@epassaro)
1973 Use spec file on Zenodo pipeline (1973) (@epassaro)
1983 Remove files already superseded by templates (1983) (@epassaro)
1977 Ignore more Black commits (1977) (@epassaro)
1971 Blackify TARDIS again (1971) (@epassaro)
1974 Add disclaimer to environment file regarding conda-forge recipe (1974) (@epassaro)
1970 Remove pull request bot comment workflow (1970) (@epassaro)
1969 Fix docs build after upgrading conda environment (1969) (@wkerzendorf)

release-2022.4.24 (2022/04/21 20:19)¶

1933 Intensity p rays (1933) (@Rodot-)
1948 Update TARDIS environment after replacing PyNE (1948) (@epassaro)
1957 Removing Levels Index Variable Within Atomic Data Preperation (1957) (@bartnikm)
1968 fixed index typo in Saha solver documentation (1968) (@afloers)
1959 Disable mamba on Azure Pipelines (1959) (@epassaro)
1967 Logging/csvy parsers errors (1967) (@wkerzendorf)
1813 Replacing PyNE with radioactivedecay for radionuclide decay calculations (1813) (@lemointm)

release-2022.4.1 (2022/04/07 10:38)¶

1925 Plasma Graph Tutorial (1925) (@bartnikm)

release-2022.4.3 (2022/03/28 10:30)¶

1899 Filtering Levels Parameter within Plasma Calculations (1899) (@bartnikm)
1920 Estimators and Convergence Documentation (1920) (@isaacgsmith)
1938 Pin Jinja version (1938) (@isaacgsmith)

release-2022.3.27 (2022/03/23 11:51)¶

1928 Fixing various physics documentation issues (1928) (@isaacgsmith)

release-2022.3.2 (2022/03/14 11:16)¶

1898 Making changes to estimators (1898) (@isaacgsmith)

release-2022.3.13 (2022/03/10 10:35)¶

1922 Fixing documentation links and misc. API documentation fixes (1922) (@isaacgsmith)

release-2022.3.6 (2022/03/03 14:21)¶

1919 GPU Options (1919) (@KevinCawley)
1918 Fix documentation build failure due to PR #1823 (1918) (@atharva-2001)
1917 Continuum Opacities (1917) (@Rodot-)
1823 Disable Convergence Plots by default (1823) (@atharva-2001)
1914 add continuum tracer (1914) (@wkerzendorf)

release-2022.2.27 (2022/02/24 16:00)¶

1886 Continuum branch [attempted merge with master] (1886) (@wkerzendorf)
1907 Add note on GPU selection to formal integral (1907) (@KevinCawley)
1710 Changed Formatting for the logger based on Log Level (1710) (@DhruvSondhi)
1901 Fix PyTest fixtures and updated mainloop to properly compile (1901) (@Rodot-)
1900 Make update-refdata pipeline open a PR instead of merging changes (1900) (@epassaro)

release-2022.2.2 (2022/02/17 15:14)¶

1837 CUDA Version of the Formal Integral (1837) (@KevinCawley)
1891 Fixing Broken Latex Code (1891) (@bartnikm)
1868 Fixing Plasma Graph to Allow .dot and .tex file Generation (1868) (@bartnikm)
1893 Fixing small docs issues (1893) (@isaacgsmith)

release-2022.2.6 (2022/02/02 12:16)¶

1888 Pin Black (1888) (@atharva-2001)
1881 Changed to append seed & index values only once for a particular RPacketTracker instance (1881) (@DhruvSondhi)

release-2022.1.3 (2022/01/29 08:59)¶

1877 printing packet information (1877) (@wkerzendorf)
1867 Arepo parser (1867) (@AlexHls)
1843 Changed Default Log Level to INFO for the Simulation Logging (1843) (@DhruvSondhi)
1849 Interactive docs for models (1849) (@isaacgsmith)
1876 fixed outdated pytest tardis command in documentation (1876) (@afloers)
1874 move transport related parts to r_packet_transport (1874) (@wkerzendorf)
1872 Fix links in the code of conduct (1872) (@isaacgsmith)
1847 Add a ModelState class (1847) (@atharva-2001)

release-2022.1.23 (2022/01/21 11:50)¶

1865 Fixing links on contributing page (1865) (@isaacgsmith)
1866 Refactor test_configuration_namespace.py (1866) (@atharva-2001)
1861 Renamed RPacketCollection Class to RPacketTracker (1861) (@DhruvSondhi)

release-2022.1.16 (2022/01/12 10:11)¶

1827 Adding Explanations to Spectrum Configuration (1827) (@bartnikm)
1752 Add tests to SDEC plotter module (1752) (@jaladh-singhal)
1848 Switching progress bars page to rst (1848) (@isaacgsmith)

release-2022.1.9 (2022/01/06 10:59)¶

1846 Fix Virtual Packet Logging Bug (1846) (@atharva-2001)

release-2021.12.19 (2021/12/13 13:38)¶

1834 Adding Luminosity Integral Explanation to Supernova Configuration (1834) (@bartnikm)
1842 Fixed fstring issue from mixing quotes and reformatted files from fstring PR with black (1842) (@Rodot-)
1841 Fixed the Failing Documentation for Tracking RPacket Feature (1841) (@DhruvSondhi)

release-2021.12.12 (2021/12/10 12:30)¶

1835 Reorganizing docs for website release (1835) (@isaacgsmith)
1748 Tracking RPacket Properties in Montecarlo Single Packet Loop Function (1748) (@DhruvSondhi)
1706 Changed to fstring (1706) (@svenkat19)
1833 Editing instructions for contributing to the documentation (1833) (@isaacgsmith)

release-2021.12.5 (2021/12/02 14:14)¶

1832 Convert quantities to arrays when plotting in SDEC plot (1832) (@atharva-2001)
1830 Name plotly traces in SDEC plot (1830) (@atharva-2001)

release-2021.11.28 (2021/11/25 12:29)¶

1825 changed all files to import constants from only tardis (1825) (@shilpiprd)

release-2021.11.21 (2021/11/14 18:43)¶

release-2021.11.14 (2021/11/12 09:24)¶

1799 Bug fixes and Improvements in Custom Abundance Widget (1799) (@yuyizheng1112)
1803 Option to make docs build in parallel (1803) (@isaacgsmith)
1817 Fixing SDEC docs page (1817) (@isaacgsmith)

release-2021.11.7 (2021/10/31 19:43)¶

release-2021.10.31 (2021/10/27 15:00)¶

1821 remove numexpr (1821) (@wkerzendorf)
1788 Add cmap option to specify the colormap of plot (1788) (@yuyizheng1112)
1801 Cleaning up docs build (1801) (@isaacgsmith)
1808 Fixing import for binder (1808) (@isaacgsmith)
1816 fix push job on update changelog workflow (1816) (@epassaro)

release-2021.10.17 (2021/10/14 11:37)¶

1811 Fixing broken documentation (1811) (@isaacgsmith)
1744 Basic Spectrum Generation Interactive Documentation (1744) (@isaacgsmith)
1810 Add option to add Observed Spectrum (2) (1810) (@atharva-2001)

release-2021.10.1 (2021/10/06 09:38)¶

1806 Pin jsonschema to v3 (1806) (@atharva-2001)
1805 Revert “Add option to add Observed Spectrum” (1805) (@)
1761 Add option to add Observed Spectrum (1761) (@atharva-2001)
1794 Change virtual spectrum spawn range start value to 1 (1794) (@atharva-2001)

release-2021.9.26 (2021/09/24 17:20)¶

1757 Auto-Generating Tutorials Page (1757) (@isaacgsmith)

release-2021.9.19 (2021/09/17 10:41)¶

1784 Restructure Custom Abundance Widget code (1784) (@yuyizheng1112)
1763 Making Changes to Several Tutorials (1763) (@isaacgsmith)

release-2021.9.12 (2021/09/09 07:18)¶

1790 disable changelog in release pipeline (1790) (@epassaro)
1769 Changed the way specific_log_level flag works in the Logging Configuration (1769) (@DhruvSondhi)

release-2021.8.29 (2021/08/26 13:02)¶

release-2021.8.26 (2021/08/26 12:40)¶

1789 fix zenodo pipeline (2nd) (1789) (@epassaro)
1787 fix zenodo pipeline env (1787) (@epassaro)
1786 fix for release task (1786) (@epassaro)
1703 Adding Progress Bars (1703) (@atharva-2001)
1775 orchestrating continuous delivery pipeline (1775) (@epassaro)
1751 Integrate custom abundance widget as a full module (1751) (@yuyizheng1112)
1778 Fix Hover Data in Plasma Convergence Plots (1778) (@atharva-2001)
1693 Enabling virtual_packet_logging by default in the visualization folder (1693) (@atharva-2001)

release-2021.8.15.0 (2021/08/12 10:24)¶

1770 Rename cplots to convergence_plots (1770) (@atharva-2001)
1772 Reverse legend in Plasma Convergence Plots (1772) (@atharva-2001)

release-2021.8.8.0 (2021/08/05 14:49)¶

1768 Renamed specific log flag to specific_log_level (1768) (@DhruvSondhi)
1721 Restructure Model Configuration Documentation (1721) (@isaacgsmith)

release-2021.8.1.0 (2021/07/29 14:57)¶

1753 Adding Convergence Plots to the Documentation (1753) (@atharva-2001)
1738 TARDIS Grid (1738) (@marxwillia)
1755 Changing Note Format in Visualization Notebooks (1755) (@isaacgsmith)
1740 Renamed montecarlo_logger.py to montecarlo_tracking.py (1740) (@DhruvSondhi)

release-2021.7.25.0 (2021/07/23 12:16)¶

1697 Interact Button in Documentation (1697) (@isaacgsmith)
1636 Adding Convergence Plots (1636) (@atharva-2001)
1723 Edit docstring in run_tardis (1723) (@atharva-2001)
1743 Fix for Unresponsive Main Page due to Twitter Widget (1743) (@atharva-2001)
1746 Fixing Docs Build (1746) (@isaacgsmith)
1730 Renamed log_state to log_level for setting the logging level in the Logger (1730) (@DhruvSondhi)
1736 Fixing Doc Build Warnings (1736) (@isaacgsmith)
1737 Add Jaladh to mailmap (1737) (@jaladh-singhal)
1739 Fixed IPython Displaying the Plasma Stratification (Table) even when the Logger is turned Off (1739) (@DhruvSondhi)
1742 Reduce damping_constant under t_inner property in tardis_example.yml (1742) (@atharva-2001)

release-2021.7.18.0 (2021/07/16 10:41)¶

1665 Demonstrating the nelements and the species_list functionality in the SDEC plot notebook (1665) (@marxwillia)
1727 Fixing Quickstart Metadata (1727) (@isaacgsmith)
1726 display “latest” in doc version (1726) (@epassaro)
1716 Small fixes to docs (1716) (@isaacgsmith)
1722 Adding missing import for IonNumberDensityHeNLTE in standard_plasmas.py (1722) (@DhruvSondhi)
1714 Removed Formatting from Existing Log Messages (1714) (@DhruvSondhi)

release-2021.7.14.0 (2021/07/14 11:39)¶

1707 Open in VSCode badge (1707) (@wkerzendorf)
1713 fix package data for conda-forge package (1713) (@epassaro)
1711 Changed the xlim and the ylabel (From PR #1646) (1711) (@Rodot-)

release-2021.7.12.0 (2021/07/12 16:05)¶

1686 fix pip install (1686) (@epassaro)
1701 Adding Logging Support for Caught Exceptions (1701) (@DhruvSondhi)
1684 Moved Simulation & Montecarlo Logging Frameworks to tardis/io/logger folder (1684) (@DhruvSondhi)
1691 Create profiling directory (1691) (@KevinCawley)

release-2021.7.11.0 (2021/07/09 13:07)¶

1680 add docstr-coverage badge (1680) (@epassaro)
1696 Adding mu and r to virtual packet logging (1696) (@isaacgsmith)
1695 Enabling spectrum plotting in the frequency domain (1695) (@isaacgsmith)

release-2021.7.5 (2021/07/05 10:32)¶

1688 final changes for release pipeline (1688) (@epassaro)
1683 prepare release pipeline for CalVer (1683) (@epassaro)

release-2021.07.01 (2021/07/01 19:05)¶

1674 APE 17 migration (1674) (@epassaro)
1658 add refdata repo selection in template (1658) (@epassaro)
1677 Revert “Port tardis_opacities script from tardisanalysis” (1677) (@andrewfullard)
1660 Small fixes to I/O documentation (1660) (@isaacgsmith)
1681 add latest black commit to .git-blame-ignore-revs (1681) (@epassaro)
1678 Enabling Repository on Binder (1678) (@isaacgsmith)
1679 Formatted files with Black (1679) (@DhruvSondhi)
1633 Implementing Logging Configuration for Notebook Logging (1633) (@DhruvSondhi)
1642 Adding Glossary (1642) (@J-Je0ng)
1580 Port tardis_opacities script from tardisanalysis (1580) (@MarkMageeAstro)

v3.0.dev4019 (2021/06/25 12:09)¶

1664 use conda-forge packages instead of pypi (1664) (@epassaro)
1667 Moving Profiling Page (1667) (@isaacgsmith)
1659 Restructure Documentation pt. 2 (1659) (@isaacgsmith)
1656 Editing sponsors and credits pages of documentation (1656) (@isaacgsmith)
1597 add value error to ensure active virtual packet logging in SDECPlotter (1597) (@yuyizheng1112)
1630 Fix FileExistsError in to_hdf() (1630) (@yuyizheng1112)
1641 Editing Installation Page (1641) (@musabbihaz)
1657 Add SnakeViz profiling example (1657) (@KevinCawley)

v3.0.dev4010 (2021/06/18 17:22)¶

1644 add mailmap check workflow (1644) (@epassaro)
1589 Adding Interactive Initialization Documentation (1589) (@isaacgsmith)
1627 Correct misspelling in sdec_plot (1627) (@yuyizheng1112)
1632 Formatting Logging Output for Simulation (1632) (@DhruvSondhi)
1652 changes to environment (1652) (@epassaro)
1650 Adding functionality to Detect Running Environments for TARDIS Simulations (1650) (@DhruvSondhi)
1615 add flag to disable nbsphinx (1615) (@epassaro)
1651 force orphan gh-pages branch (1651) (@epassaro)
1643 Restructure Documentation (1643) (@isaacgsmith)
1647 Fix for the v-packet logging while parallelism is enabled. (1647) (@Rodot-)
1645 configure codecov (1645) (@epassaro)
1586 add gh pages instruction (1586) (@epassaro)

v3.0.dev3998 (2021/06/14 10:52)¶

1648 fix compareWith parameter in release pipeline (1648) (@epassaro)
1609 update refdata procedure docs (1609) (@epassaro)
1635 test before make a new release (1635) (@epassaro)
1617 Fixing docstrings & indentation related warnings for Sphinx (1617) (@DhruvSondhi)
1565 Fix for close line test. (1565) (@Rodot-)
1639 push montecarlo data to refdata repo (1639) (@epassaro)
1595 move zenodo pipeline to GA (1595) (@epassaro)
1623 force pyne nomoab_openmc version (1623) (@epassaro)
1622 Adding GitHub to sponsors page (1622) (@isaacgsmith)
1631 update mailmap and orcid (1631) (@epassaro)
1619 disable repeat on pr comment (1619) (@epassaro)

v3.0.dev3983 (2021/06/04 12:50)¶

1555 Replacing the contents of the news section with TARDIS twitter feed (1555) (@atharva-2001)
1610 add token at checkout step (1610) (@epassaro)
1594 Fixing JSON Schema not Rendering Properly in the Documentation (1594) (@DhruvSondhi)
1607 SDEC Visibility Fix (1607) (@atharva-2001)
1603 Bot mail change (1603) (@epassaro)
1601 Fixing documentation build (1601) (@isaacgsmith)
1602 add fetch depth param to changelog workflow (1602) (@epassaro)
1588 Added PR review checklist workflow (1588) (@aribalam)
1592 Flexible packet initial radius (1592) (@andrewfullard)
1598 Resolving warnings in ADS notebook (1598) (@isaacgsmith)
1596 Fixing bibliography in documentation build (1596) (@isaacgsmith)
1590 Fixing inconsistencies for rst formatting in Docs (Second Iteration) (1590) (@DhruvSondhi)

v3.0.dev3970 (2021/05/28 17:43)¶

1570 add fetch depth param to Azure template (1570) (@epassaro)
1567 review environment file (1567) (@epassaro)
1584 Making sponsors page of documentation (1584) (@isaacgsmith)
1577 Fixing issues with Citations & Label references in Docs (1577) (@marxwillia)
1581 changes to badges (1581) (@marxwillia)

v3.0.dev3959 (2021/05/21 14:44)¶

1582 Fixing Team Link redirection in Code Of Conduct (1582) (@marxwillia)

v3.0.dev3957 (2021/05/20 15:27)¶

1571 Fix numba deprecation (1571) (@KevinCawley)
1578 minor changes to compare refdata pipeline (1578) (@epassaro)
1557 Changed Quickstart Example according to #1477 (1557) (@aribalam)
1575 Fixing virtual_packet_logging instructions for line info widget (1575) (@DhruvSondhi)
1574 Revert “Adding Instructions For Enabling virtual_packet_logging Properties in Config” (1574) (@jaladh-singhal)

v3.0.dev3952 (2021/05/14 13:44)¶

1559 Added support for passing Configuration object in run_tardis (1559) (@aribalam)
1553 Fixing RST Formatting for config_validator.rst (1553) (@DhruvSondhi)
1551 Adding Instructions For Enabling virtual_packet_logging Properties in Config (1551) (@DhruvSondhi)
1528 Revising “Packet Propagation” page of physics docs (1528) (@isaacgsmith)
1569 Fixing docs build problem (1569) (@isaacgsmith)

v3.0.dev3947 (2021/05/12 16:42)¶

1566 better handling of pickle5 backport (1566) (@epassaro)
1562 added symlinks for tardis_example.yml (1562) (@parikshit14)

v3.0.dev3945 (2021/05/05 10:03)¶

1434 create update refdata pipeline (1434) (@epassaro)
1554 Adding Config Value Validation for Different Parameters via Config File (1554) (@DhruvSondhi)
1549 Numba formal integral (1549) (@Rodot-)
1546 Fixing Bad YAML output in the documentation (1546) (@atharva-2001)
1543 Restructuring r_packet.py (1543) (@andrewfullard)
1539 Add ion contributions to SDEC plotter (1539) (@MarkMageeAstro)
1531 Fixing SDEC labels bug in the documentation (1531) (@atharva-2001)
1450 string formatting done (try fixing all syntax errors) (1450) (@yashagg2001)
1493 Added workflow for Documentation preview generation (1493) (@aribalam)
1540 Fix version number in docs (1540) (@epassaro)
1538 clean template files (1538) (@epassaro)
1512 Improved default number of interpolate_shells for the formal integral (1512) (@chvogl)
1499 [WIP] Enable full tests for Formal Integral (1499) (@aribalam)
1530 Small fixes in git_workflow guide (1530) (@Molkree)
1535 Fix macOS tests (pickle protocol 5) (1535) (@epassaro)
1478 add the symlink to visualization examples (1478) (@yuyizheng1112)
1527 Fixing the documentation bug (1527) (@atharva-2001)
1526 enable manual trigger for docs (1526) (@epassaro)
1517 Add catch for missing elements in SDEC plot (1517) (@MarkMageeAstro)
1483 Corrected csvy model files (1483) (@antreev-brar)
1479 getting rid of lexsort warning (1479) (@atharva-2001)
1506 Add ability to plot only top contributing elements to SDEC plot (1506) (@MarkMageeAstro)
1509 Collisional ionization (1509) (@chvogl)
1477 Added option for keyword arguments in the TardisSpectrum’s plot method (1477) (@aribalam)
1474 Docs Update (1474) (@ankur-soni97)
1498 Feature request: add virtual-packet-logging option to run_tardis() (1498) (@yuyizheng1112)
1502 Correct .coveragerc file (1502) (@yuyizheng1112)
1492 Fix docstring mistakes in #1145 (1492) (@chvogl)
1505 Fixing Visualization Notebook Hyperlink (1505) (@KevinCawley)
1481 Added Documentation for Parallel execution with Numba and OpenMP (1481) (@aribalam)
1145 Add photoionization-related rates (1145) (@chvogl)
1470 Incorporating old physics section of the documentation (1470) (@isaacgsmith)
1459 Removed the deprecated –with-vpacket-logging flag (1459) (@antreev-brar)
1462 Renamed widgets subpackage to visualization and restructured modules within it (1462) (@jaladh-singhal)
1464 Fixed the array types when interpolate_shells > 0. Now returns the p… (1464) (@Rodot-)
1454 Reorganizing Models (1454) (@isaacgsmith)
1458 Added option to create redirects in docs configuration and redirected gui to visualization (1458) (@jaladh-singhal)
1457 Reproduced SDEC plots in demo notebook (1457) (@marxwillia)
1446 Fixed italicised Units in sdec_plot (1446) (@DhruvSondhi)
1438 Add documentation for Spectral Element Decomposition Plot (1438) (@jaladh-singhal)
1455 Clean up numba parallelization warnings #1416 (1455) (@antreev-brar)
1442 Fixed distance parameter not producing accurate SDEC plots (1442) (@jaladh-singhal)
1432 fix update changelog workflow (1432) (@epassaro)
1441 Rename SEDec to SDEC in Spectral element DEComposition plot (1441) (@jaladh-singhal)
1430 compare refdata with arbitrary labels (1430) (@epassaro)
1431 Documentation guidelines hotfix (1431) (@KevinCawley)
1424 Rename Kromer Plot to Spectral Element Decomposition (SEDec) Plot (1424) (@jaladh-singhal)
1409 add docstr-coverage workflow (1409) (@epassaro)
1405 Restructured development workflow and added code quality & documentation guidelines in it (1405) (@andrewfullard)
1421 Old physics reorganization (1421) (@andrewfullard)
1423 fixes for ci docs (1423) (@andrewfullard)
1420 Conversion of enlisted variable to int64 datatype (1420) (@andrewfullard)
1403 Fixing Hyperlinks in Documentation (1403) (@andrewfullard)
1410 Post reference data results (1410) (@andrewfullard)
1415 Add .log to gitignore, disabled montecarlo log (1415) (@andrewfullard)

v3.0.dev3808 (2021/01/21 11:22)¶

1414 blackify tests (1414) (@andrewfullard)
1413 Corrected the Hyperlink reference (1413) (@andrewfullard)
1398 add black check workflow (1398) (@andrewfullard)

v3.0.dev3801 (2021/01/08 16:28)¶

1399 fix tests with –generate-reference flag (1399) (@andrewfullard)
1393 Update environment file (1393) (@epassaro)
1404 added functionality for automatic date updation in docs (1404) (@andrewfullard)

v3.0.dev3796 (2020/12/28 12:12)¶

1402 explicitly add parso to dependencies (1402) (@andrewfullard)

v3.0.dev3794 (2020/12/21 10:22)¶

1241 Add modified Kromer plot to work with widgets (1241) (@marxwillia)

v3.0.dev3769 (2020/12/18 16:07)¶

1395 Update Matterbridge docs (1395) (@epassaro)
1369 Fix incorrect docstrings (1369) (@KevinCawley)
1383 add preview docs section (1383) (@epassaro)
1392 Fix documentation build (1392) (@epassaro)
1394 Revert “Fixing docs building problem” (1394) (@andrewfullard)
1387 Fixing docs building problem (1387) (@isaacgsmith)
1380 Packet logging fixes for visualization (1380) (@andrewfullard)
1384 Small fixes for existing workflows (1384) (@epassaro)

v3.0.dev3756 (2020/12/11 14:43)¶

1382 Fixing Quickstart Problem (1382) (@andrewfullard)
1379 Reorganizing files in docs (2/2) (1379) (@andrewfullard)
1378 Adding Plasma File in TOC (1378) (@andrewfullard)
1371 Reorganizing files in docs (1/2) (1371) (@andrewfullard)
1372 Update CI doc section (1372) (@epassaro)
1375 Fixed real packet logging of properties (1375) (@andrewfullard)
1354 Virtual packet logging fix (1354) (@andrewfullard)
1368 Fix of Issue #1176 (1368) (@andrewfullard)
1365 Parallel numba setup (1365) (@andrewfullard)
1331 Update changelog workflow (1331) (@andrewfullard)

v3.0.dev3698 (2020/12/04 14:50)¶

1366 Fix duplicate appending of scalars in HDF writer and add an overwrite option (1366) (@andrewfullard)
1364 Fixing issue #1357 (1364) (@andrewfullard)
1359 Fix of Issue #680 (1359) (@KevinCawley)
1361 Fixing issue #1177 (1361) (@isaacgsmith)

v3.0.dev3680 (2020/11/25 13:38)¶

1358 Fix C formal integral (1358) (@andrewfullard)
1352 Add Arjun’s emails to .mailmap (1352) (@andrewfullard)
929 Numba montecarlo (929) (@wkerzendorf)

v3.0.dev3673 (2020/11/18 11:26)¶

1353 fix doc workflow (1353) (@wkerzendorf)
1349 Adding documentation for research articles that used TARDIS (1349) (@andrewfullard)

v3.0.dev3541 (2020/11/10 13:45)¶

1340 Moved staticmethods of line_info module to a dedicated plot_util module (1340) (@marxwillia)

v3.0.dev3539 (2020/11/04 11:50)¶

1333 Rename testing pipeline (1333) (@epassaro)
1300 Remove pip install option from TARDIS installation docs (1300) (@jaladh-singhal)
1330 Small fix for release pipeline (1330) (@epassaro)
1332 Remove helper scripts (1332) (@epassaro)
1335 Updated gitignore to ignore auto-generated files (1335) (@jaladh-singhal)
1326 Add workflow for autodeploying documentation to github pages via an action (1326) (@morganlee123)
1283 Changed latex strings to raw strings (1283) (@Ak0303)
1310 Apply new template to refdata pipeline (1310) (@epassaro)
1308 Apply new template to release pipeline (1308) (@epassaro)

v3.0.dev3527 (2020/10/05 12:43)¶

1313 Add Sponsor button to TARDIS (1313) (@jaladh-singhal)

v3.0.dev3526 (2020/10/01 05:50)¶

1312 Add Matterbridge documentation (1312) (@epassaro)
1274 Add space to plasma error message (1274) (@marxwillia)
1280 Add widgets documentation to tardis docs (1280) (@marxwillia)

v3.0.dev3510 (2020/09/25 11:56)¶

1299 Model configuration output in HDF (1299) (@andrewfullard)
1304 Use tardis-refdata from Azure mirror (CI/CD) (1304) (@epassaro)
1264 Add line info widget to widgets subpackage (1264) (@jaladh-singhal)

v3.0.dev3504 (2020/09/09 06:16)¶

1296 Pin pyne to 0.7.0 (1296) (@andrewfullard)
1319 Numba montecarlo tests merged (1319) (@chvogl)
1318 Numba montecarlo profile1 (1318) (@Rodot-)
1317 Fixed calculate_distance_line showing nu_diff < 0 (1317) (@Rodot-)
1309 Re-add C formal integral (1309) (@chvogl)

v3.0.dev3503 (2020/09/04 05:18)¶

1291 Download atom data from opensupernova mirror (1291) (@epassaro)
1254 Fix how virtual_packet properties are saved in hdf (1254) (@jaladh-singhal)
1278 Pin numpy to v1.19 (1278) (@epassaro)

v3.0.dev3500 (2020/08/12 05:52)¶

1271 Move to NumPy 1.19 (1271) (@epassaro)
1266 Move to Pandas 1.x (1266) (@epassaro)
1235 test and fix for issue #1228 (1235) (@ebjordi)

v3.0.dev3497 (2020/08/07 11:26)¶

1267 Temporarily fetch refdata from GDrive (1267) (@epassaro)
1265 add GIT_LFS_SMUDGE (1265) (@kaushik94)
1262 Update package versions (1262) (@epassaro)
1263 Clean up status badge display (1263) (@chvogl)
1261 Add governance document (1261) (@wkerzendorf)

v3.0.dev3487 (2020/07/30 18:18)¶

1259 Emphasised reporting instructions in code of conduct (1259) (@harpolea)
1255 Pin pyne to v0.5 (1255) (@epassaro)
1213 Re-applied Black formatting to tardis after excluding undesired directories (1213) (@jaladh-singhal)

v3.0.dev3484 (2020/07/19 10:30)¶

1210 [MRG] Using Mamba in Pipelines (1210) (@kaushik94)
1237 Add new Contribution guidelines (1237) (@jaladh-singhal)
1238 code of conduct symlink (1238) (@wkerzendorf)
1234 TARDIS Code of Conduct (1234) (@wkerzendorf)
1233 Update of the Governance model (1233) (@wkerzendorf)
1231 Roadmap Documentation Page (1231) (@marxwillia)
1227 Restore caching to spectrum_integrated (1227) (@arjunsavel)

v3.0.dev3477 (2020/07/08 23:06)¶

1218 Move and rename coverage file (1218) (@arjunsavel)
1224 Added better mission statement (1224) (@ycamacho)
1190 Change pytestconfig to request.config (1190) (@epassaro)
1219 Update index.rst to add mission statement (1219) (@ycamacho)

v3.0.dev3472 (2020/06/27 16:11)¶

1203 Minor changes to the environment file and cleanup (1203) (@epassaro)
1209 add sashank27 ORCID ID (1209) (@sashank27)
1207 add git-blame-ignore for code style black Changes (1207) (@wkerzendorf)
1201 Code style black (1201) (@wkerzendorf)
1200 Add jaladh-singhal’s orcid to .orcid.csv (1200) (@jaladh-singhal)
1197 add arjun’s name to the ORCID list (1197) (@arjunsavel)
1166 Create a new subpackage for jupyter-widgets and add shell info widgets (1166) (@jaladh-singhal)

v3.0.dev3463 (2020/06/19 18:51)¶

1195 Fix badges in README.rst (1195) (@epassaro)
1193 Unpin astropy version (1193) (@epassaro)
1191 Add note to tell users which OS are supported (issue #1125) (1191) (@ebjordi)
1158 Make consistency edits to documentation (1158) (@arjunsavel)

v3.0.dev3459 (2020/06/12 14:01)¶

1185 Upgrade pytest version (1185) (@epassaro)

v3.0.dev3458 (2020/06/02 15:11)¶

1180 Remove test pipeline (1180) (@epassaro)
1153 update doc page to a notebook (1153) (@sashank27)
1150 Fix the Plasma tests (1150) (@wkerzendorf)
1178 Update mailmap (1178) (@epassaro)
1171 Print statement debug (1171) (@arjunsavel)
1165 Fix callbacks in run_tardis (1165) (@Rodot-)

v3.0.dev3448 (2020/05/28 13:08)¶

1173 Fix GUI and plasma tests (1173) (@marxwillia)
1168 Add checkpoint to PR template checklist (1168) (@harpolea)
1162 Fix broken pipelines (1162) (@epassaro)

v3.0.dev3442 (2020/05/21 19:34)¶

1159 Montecarlo/fix omp integrator (1159) (@Rodot-)
1155 CodeCov reintegration (1155) (@wkerzendorf)
1157 Update .mailmap (1157) (@epassaro)

v3.0.dev3439 (2020/05/20 09:25)¶

1142 Split release pipeline (1142) (@epassaro)
1151 Git ignored VSCode specific files (1151) (@jaladh-singhal)
1149 Made plot size larger in quickstart notebook (1149) (@jaladh-singhal)
1147 allow downloading of example file in quickstart (1147) (@sashank27)
1105 Add skip condition if QT_API is no set (issue #1101) (1105) (@marxwillia)
1143 Set manual trigger on file (compare refdata) (1143) (@marxwillia)
1144 add option to execute quickstart in build (1144) (@sashank27)

v3.0.dev3424 (2020/05/07 11:29)¶

1133 Solve pending issues of the release pipeline (1133) (@epassaro)
1141 fix warnings in quickstart (1141) (@sashank27)
1137 Increasing glob-like omission of coverage files (1137) (@arjunsavel)
1139 Added more file types to git ignore (1139) (@jaladh-singhal)
1134 Update mailmap (1134) (@orbitfold)
1135 Running tests on MacOS-10.14 (1135) (@orbitfold)
1285 Final numba PR (1285) (@arjunsavel)
1244 Fix numba_montecarlo virtual spectrum (1244) (@arjunsavel)
1136 Debugging relativity on numba_montecarlo (1136) (@arjunsavel)
1068 Migrate gui to PyQt5 (issue #988) (1068) (@ebjordi)
1085 Solves issue #680 for tardis.util.base (1085) (@marxwillia)
1055 renamed capmanager class functions to its new ones (1055) (@not4win)
1048 Re-activate TARDIS tests (1048) (@epassaro)

v3.0.dev3409 (2020/02/24 23:02)¶

1046 Updated zenodo.json (1046) (@epassaro)
1045 Fix file paths at diff step in release pipeline (1045) (@epassaro)
1040 Re-activate release job (1040) (@epassaro)
1039 Update .mailmap (1039) (@epassaro)

v3.0.dev3403 (2020/02/19 10:55)¶

1031 Create Zenodo JSON file (1031) (@epassaro)
1036 Update zenodo.json (1036) (@epassaro)
1035 Update .mailmap (1035) (@epassaro)
1034 Update .mailmap (1034) (@epassaro)
1032 Add Mark Magee to .mailmap (1032) (@epassaro)
1025 Add compilers to environment YAML file (1025) (@epassaro)
1026 Minor changes to Azure release (1026) (@epassaro)

3.0.dev3396 (2020/02/07 10:00)¶

1027 Added Mark Magee (1027) (@MarkMageeAstro)
1024 Add epassaro orcid (1024) (@epassaro)
1022 Added my orcid (1022) (@harpolea)

3.0.dev3384 (2020/02/02 16:56)¶

1021 Set cron job, disable CI and PR (1021) (@epassaro)

3.0.dev3383 (2020/02/02 14:01)¶

1015 Set up release TARDIS version with Azure Pipelines (1015) (@epassaro)
1020 Update .mailmap (1020) (@livnehra)
1018 Updated .mailmap (1018) (@epassaro)
1010 Pipeline for comparing reference data (1010) (@epassaro)
1016 Removed GH Action for release versions (1016) (@epassaro)
1013 Fixed typo in GH Action (1013) (@epassaro)
1006 Trying to get the right version number for automatic release (1006) (@epassaro)
1008 Improvements for the update_reference section [docs] (1008) (@epassaro)
1011 Gui fix (1011) (@marxwillia)
1009 Fix for packet source unit test (1009) (@epassaro)
1007 Fix for vboundary tests (1007) (@epassaro)
995 Checking failing tests on Azure (995) (@kaushik94)
1005 Automatic TARDIS releases (1005) (@epassaro)
1004 Fixed csvy abundance indexing bug (1004) (@marxwillia)
1003 Custom source packets (1003) (@marxwillia)
994 Large cleanup operation (994) (@wkerzendorf)
992 Changes made to documentation for update_refdata (992) (@kowal180)
967 log additional properties in hdf witeout when –with-vpacket-logging is present (967) (@kaushik94)
969 Fixes numpydoc for util (969) (@kowal180)
985 Fix typo (985) (@jreichenbach-msu)
983 Fix installation documentation (983) (@jreichenbach-msu)
982 Pinned numpy to v1.15 (982) (@epassaro)
978 Add further fix to quickstart link (978) (@jreichenbach-msu)
975 Add links to Quickstart (975) (@jreichenbach-msu)
971 Fix formal integral spikes bug (971) (@chvogl)
968 Fixed GUI #950 tardis/gui/widgets.py (968) (@marxwillia)
965 Isotope time0 (965) (@marxwillia)
966 fix AtomData repr (966) (@wkerzendorf)
964 Raise error if requested atoms are not in the atomic data (964) (@chvogl)
959 Csvy model config dict (959) (@marxwillia)
960 Save integrated spectrum to hdf if requested (960) (@chvogl)
957 add blondin converter (957) (@wkerzendorf)
956 Dilution factor fix (956) (@marxwillia)
953 add code comparison (953) (@wkerzendorf)
952 Base schema fix (952) (@marxwillia)
951 Documentation restructure (951) (@wkerzendorf)
936 csvy_model (936) (@wkerzendorf)
945 Revert “Remove PR Trigger” (945) (@wkerzendorf)
928 Added csvy parser (928) (@marxwillia)
933 Radiative recombination (933) (@chvogl)

v3.0-alpha.3 (2019/05/13 18:05)¶

930 Fix for conda-forge package (930) (@epassaro)
918 Density docs (918) (@marxwillia)
926 Adding a TARDIS data repo (926) (@wkerzendorf)
924 Migrate beta_sobolev calculation from cython to numba (924) (@chvogl)
925 Docs/fix changelog (925) (@wkerzendorf)
923 Fix nlte normalization (923) (@wkerzendorf)
831 Fix NLTE Normalization - issue #784 (831) (@livnehra)
922 Revert “Fix nlte normalization “ (922) (@wkerzendorf)
920 Fix nlte normalization (920) (@wkerzendorf)
921 Autoupdate changelog (921) (@wkerzendorf)
919 Add possibility to bias vpacket emission based on optical depth (919) (@chvogl)
914 make GUI python3 compatible (914) (@wkerzendorf)
902 general overhaul of the docs for 3.0 (902) (@wkerzendorf)
916 fix the documenation up a bit (916) (@wkerzendorf)
915 Parsing STELLA files for TARDIS (915) (@sarafina325)
911 Use Russian roulette to kill v-packets with negligible weight (911) (@chvogl)
697 Relativity (697) (@chvogl)

v3.0-alpha.2 (2019/03/11 10:24)¶

v3.0.a1 (2019/03/10 11:03)¶

901 .nojekyll added to docs (901) (@debajyotidasgupta)
897 add pytest azurepipelines (897) (@wkerzendorf)
896 Adding general build artefacts (896) (@wkerzendorf)
894 Azure pipeline for TARDIS (894) (@wkerzendorf)
893 add doctr to TARDIS (893) (@wkerzendorf)
892 adding azure-pipelines (892) (@wkerzendorf)
891 New template setup from astropy (891) (@wkerzendorf)
888 Update installation.rst (888) (@nileshpatra)
886 Pandas ix fix (886) (@wkerzendorf)
879 Python3 version of TARDIS (879) (@wkerzendorf)
881 Adds description of gcc problem to documentation (881) (@ycamacho)
859 Use interpolated values to do formal integral with more shells (859) (@chvogl)
873 Some small fixes related to the documentation and the building process (Fix #842) (873) (@unoebauer)
868 Add Travis Stages: Activate Integration tests (868) (@unoebauer)
866 Add Travis Caching and separate scripts for CI (866) (@wkerzendorf)
869 Travis update2 (869) (@wkerzendorf)
864 Unify unittest hdfs (864) (@unoebauer)
865 Adding CodeCov integration (865) (@wkerzendorf)
860 Enabling the addition of callbacks in run_tardis (860) (@wkerzendorf)
863 Thomson cross section: Continuation of PR #688 (863) (@unoebauer)
850 Add full test for formal integral method (850) (@unoebauer)
861 Describe refdata update and workflow refactor (861) (@wkerzendorf)
848 Add capability to store information about the plasma state during iterations (848) (@unoebauer)
857 Refactor logging (857) (@wkerzendorf)
856 Extend formal integral to line_interaction_type macroatom (856) (@chvogl)
855 Make the conda-forge channel the only channel (855) (@wkerzendorf)
853 Fix formal integral (853) (@chvogl)
849 Missing refdata (849) (@wkerzendorf)
851 add atomic data description (851) (@wkerzendorf)
846 update the OPENMP text to be correct (846) (@wkerzendorf)
847 Revert “change to new cython version” (847) (@wkerzendorf)
839 change to new cython version (839) (@wkerzendorf)
845 Update Documentation: new location of tardis_example (845) (@unoebauer)
843 Fix issue with custom_composition reader (843) (@unoebauer)
844 Remove bbsampling from schema file (844) (@pfreddy)
837 Add json sphinx (837) (@wkerzendorf)
841 Fixed indentation and position of delta_treatment in plasma/standard_plasmas.py (841) (@Heringer-Epson)
838 fix current cython installation problem (838) (@wkerzendorf)
821 Simplify convergence strategies (821) (@unoebauer)
833 restructure landing page to use notebooks (833) (@wkerzendorf)
832 Fixes #830 (832) (@unoebauer)

v2.0.2 (2018/06/18 16:24)¶

v2_test3 (2018/06/18 16:13)¶

829 build bleeding edge cython (829) (@wkerzendorf)
828 trying to get travis to build (828) (@wkerzendorf)
827 Update travis link to miniconda (827) (@unoebauer)
826 Remove tardis_example.tar.gz from documentation; fixes #824 (826) (@unoebauer)
820 update of mailmap (820) (@wkerzendorf)
819 Reintroduce and update changelog (819) (@unoebauer)
815 Update and Fix Documentation (815) (@unoebauer)
816 Remove old and broken badges (816) (@unoebauer)
814 Fix numpydoc problem (814) (@unoebauer)
813 Request specific sphinx version (813) (@unoebauer)

v2.0 (2018/04/05 09:03)¶

812 Update of documentation (812) (@unoebauer)
809 fix dependencies for tardis conda env (809) (@wkerzendorf)
761 Add caching for integrated spectrum: Fix #760 (761) (@wkerzendorf)
715 Merge ‘generate_reference_path’ and ‘reference_path’ in integration tests (bug #672) (715) (@wkerzendorf)
801 Decay of isotopes branch (801) (@wkerzendorf)
806 Fix reference dictionary problem (806) (@wkerzendorf)
802 Fix for PR #801 (802) (@wkerzendorf)
772 [TEP007] CMFGEN density parser (772) (@wkerzendorf)
771 [TEP007] Add cmfgen2tardis script (771) (@wkerzendorf)
757 [TEP007] Decay and merge isotopic abundance dataframe (757) (@wkerzendorf)
767 [TEP007] Docs for isotope config (767) (@wkerzendorf)
764 [TEP007] Isotope stratified file support (764) (@wkerzendorf)
762 [TEP007] Isotope uniform config option (762) (@wkerzendorf)
756 [TEP007] [WIP] Isotope Abundances class (756) (@wkerzendorf)
803 include yml files in MANIFEST (803) (@wkerzendorf)
799 tardis/plasma/standard_plasmas.py: old database files warning (799) (@wkerzendorf)
797 Minor Updates: Fixes for #521 and #699 (797) (@wkerzendorf)
796 Prevent pandas SettingWithCopyWarning by copying DataFrames when slicing (796) (@wkerzendorf)
795 Force deactivate LaTeX in GUI - Fix #441 (795) (@wkerzendorf)
793 Add pyside to requirements (needed for GUI) (793) (@wkerzendorf)
794 add new readthedocs.yml (794) (@wkerzendorf)
792 Fix compatibility with networkx 2.0 (792) (@wkerzendorf)
791 Propagate changes to the line index into the GUI code (791) (@wkerzendorf)
786 The final carsus merge (786) (@wkerzendorf)
782 Plasma write_to_tex/dot unit tests (782) (@wkerzendorf)
781 Omit coverage of test related files (781) (@wkerzendorf)
785 [DOC] Update Running tests doc (785) (@wkerzendorf)
774 Replace Comparison values in Plasma Unit Tests with reference HDF file (774) (@wkerzendorf)
780 LevelBoltzmannFactorNLTE.from_config is now a staticmethod (780) (@wkerzendorf)
778 Fix NLTE (778) (@wkerzendorf)
776 Fix compatibility bug in radiative_properties (776) (@wkerzendorf)
779 Save coverage report when tests use tardis-refdata (779) (@wkerzendorf)
775 Transition from atomic-dataset config option to tardis-refdata (775) (@wkerzendorf)
769 [TEP014] [DOC] Updated to_hdf notebook (769) (@wkerzendorf)
759 Formal Integral: including electron scattering (759) (@wkerzendorf)
768 [TEP014] Simulation HDF and deprecated to_hdf cleanup. (768) (@wkerzendorf)
773 Update Documentation (773) (@wkerzendorf)
752 [TEP014] PlasmaWriterMixin (752) (@wkerzendorf)
748 [TEP014] Update Runner and Spectrum classes to use HDFWriter + Unit Tests (748) (@wkerzendorf)
765 Attempt to fix up the GUI (765) (@wkerzendorf)
758 Add new version to tardis_env27 and add pyne (758) (@wkerzendorf)
753 [TEP014][DOC] HDFWriter Documentation (753) (@wkerzendorf)
740 [GSoC] Formal integral Project (740) (@wkerzendorf)
750 [TEP005][QOL] Add MontecarloRunner.spectrum_integrated (750) (@wkerzendorf)
745 [TEP005][DOC] Documentation (745) (@wkerzendorf)
746 [TEP005][CONFIG] Prevent incompatible configurations (746) (@wkerzendorf)
741 Add unit tests for the formal integral (741) (@wkerzendorf)
747 [TEP014] Update Model and Density classes to use HDFWriter + Unit Tests (747) (@wkerzendorf)
749 [TEP014] Change name of HDFWriter to HDFWriterMixin (749) (@wkerzendorf)
751 [QOL] Add default axis to TARDISSpectrum.plot (751) (@wkerzendorf)
743 Fix bug in plasma (743) (@wkerzendorf)
744 [TEP014] Added HDFWriter class + Unit Tests (744) (@wkerzendorf)
742 Fix clash in RTD dependencies (742) (@wkerzendorf)
735 Move common ctest fixtures into conftest.py (735) (@wkerzendorf)
729 Refactor spectrum (729) (@wkerzendorf)
730 Fix test_plasma_simple not skipping properly (730) (@wkerzendorf)
712 Colorize Logger (712) (@wkerzendorf)
718 Unit test for untested method of montecarlo simulation code (718) (@unoebauer)
724 Rebase PR #678 (724) (@wkerzendorf)
709 Add note about broken GUI to docu (709) (@wkerzendorf)
708 Add new installation instructions (708) (@wkerzendorf)
704 Fix ignoring model tests (704) (@wkerzendorf)
700 Add contributing guidelines (700) (@wkerzendorf)
686 converted spectrum_frequency (686) (@wkerzendorf)
696 Add missing diagnostics property to runner’s to_hdf list (696) (@wkerzendorf)
694 Significantly reduce peak memory usage when vpacket logging is enabled (694) (@wkerzendorf)
682 Import montecarlo.base in the init module of the package. (682) (@wkerzendorf)
670 Integrate continuum interactions into cmontecarlo (670) (@wkerzendorf)
652 [TEP006] Aggregate TARDIS restructure and configuration system cleanup (652) (@wkerzendorf)
677 Update link to tardis_example.yml in documentation - Fix #676 (677) (@wkerzendorf)
674 Change matplotlib backend - fix test_integration remote plotting issue (674) (@yeganer)
664 Kd final test (664) (@wkerzendorf)
668 change to tardis atom data on git lfs (668) (@wkerzendorf)
666 Remove News from main TARDIS github page (666) (@wkerzendorf)
667 Update SOCIS and GSOC students credits (667) (@wkerzendorf)
665 Add to_hdf compression (665) (@wkerzendorf)
663 Develop (663) (@wkerzendorf)
507 Unit tests for untested methods of tardis/util.py (507) (@)
657 Require pyyaml 3.12 (657) (@wkerzendorf)
659 Update installation docs (659) (@wkerzendorf)
653 Facility to provide per-setup atom data as well as save report locally. (653) (@wkerzendorf)
641 Fix detailed radiative rates (641) (@wkerzendorf)
642 Use pytest-html==1.10.0, modify DokuReport class accordingly. (642) (@wkerzendorf)
630 Create an overview page on Dokuwiki. (630) (@yeganer)
620 Runner script to automate execution of integration tests. (620) (@wkerzendorf)
628 Remove exponent property from yaml files with exponential density (628) (@wkerzendorf)
626 Revert “Add exponent as a property for exponential density” (626) (@wkerzendorf)
542 Updates to He NLTE treatment. (542) (@wkerzendorf)
612 Add facility to generate and accept HDF files as reference data for Integration Tests. (612) (@wkerzendorf)
614 Omit the integration_tests when running coveralls (614) (@wkerzendorf)
619 Fixed incorrect name in error message (619) (@wkerzendorf)
618 to_hdf: If only the last run is stored, do not add a counter in the name (618) (@wkerzendorf)
617 Add a to_hdf method on TARDISSpectrum (617) (@wkerzendorf)
600 Parametrize the Slow Test class with two setups. (600) (@wkerzendorf)
613 Fix bug in montecarlo.pyx (613) (@wkerzendorf)
595 Line absorption rate estimator (595) (@wkerzendorf)
606 Merge to_hdf (606) (@wkerzendorf)
597 Use abundances, densities filepaths relative to w7 config file. (597) (@wkerzendorf)
569 Added a conda environment for tardis (569) (@wkerzendorf)
565 Change the way AtomData quantities are initialized (565) (@wkerzendorf)
599 Update the tardis_example tar file provided in the documentation. (599) (@wkerzendorf)
598 Fix convergence handling in run_legacy_simulation - fix issue #593 (598) (@wkerzendorf)
590 Link images of comparison plots in DokuReport using hookwrapper. (590) (@wkerzendorf)
591 Fix path of CSS and JS files used in html report. (591) (@wkerzendorf)
594 Provide tardis.yaml_load shortcut (594) (@wkerzendorf)
592 Fix virt energy (592) (@wkerzendorf)
583 Subclass pytest-html’s HTMLReport to DokuReport class for report generation and upload. (583) (@yeganer)
588 Embed comparison plots in Dokuwiki Report. (588) (@)
587 Move the three spectra attributes from Radial1DModel to MontecarloRunner (587) (@wkerzendorf)
578 Shift slow test related pytest hooks in lower level conftest.py (578) (@)
581 Update several files to match package_template (581) (@yeganer)
576 [config-system] Validator rewrite: Use jsonschema (576) (@wkerzendorf)
549 [TEP006] Create a JSON schema in YAML to replace the old tardis_config_definition.yml (549) (@ftsamis)
575 Replace misused calls to yaml.load with a helper function. (575) (@wkerzendorf)
570 Enable generation of html report of integration tests, and upload to dokuwiki. (570) (@wkerzendorf)
574 tardis/base.py: Remove duplicate code from run_tardis (574) (@wkerzendorf)
573 io/util.py (YAMLLoader): Use OrderedDict to store loaded YAML (573) (@wkerzendorf)
572 Change the way YAMLLoader resolves some properties (572) (@wkerzendorf)
532 Documentation overhaul (532) (@wkerzendorf)
571 [config] Set the exponent property as mandatory when density is exponential (571) (@ftsamis)
566 Initial laydown of comparison plots for TestW7. (566) (@)
567 Accept keyword arguments for Configuration.from_yaml (567) (@wkerzendorf)
561 TestW7: Assertions for spectrum quantities, fixture for handling baseline data. (561) (@wkerzendorf)
515 [config-system] Add a custom YAML Loader to parse astropy quantities (515) (@wkerzendorf)
555 Use pytest’s monkeypatch.chdir to change the working directory in the config_reader tests (555) (@wkerzendorf)
558 Integration Test class for Stratified W7 setup. (558) (@wkerzendorf)
557 Enable skipping slow tests. (557) (@unoebauer)
544 Continue cmontecarlo tests refactor. Extend #530. (544) (@unoebauer)
543 Fix issue #535: Treat rel. paths inside config relative to the config file (543) (@wkerzendorf)
551 Add SOCIS 2016 advertisement (551) (@wkerzendorf)
547 Fix Issue #548 (547) (@wkerzendorf)
545 added mailmap to compile the commits for each person (545) (@wkerzendorf)
539 Adding OSX to our travis build (539) (@wkerzendorf)
541 Move progress bar update after calculation (541) (@yeganer)
540 Mirroring C enums in Python for CMontecarlo tests. (540) (@yeganer)
538 Upgrading to the new Readthedocs infrastructure (538) (@wkerzendorf)
530 Refactor cmontecarlo tests for exercising parametrization. (530) (@yeganer)
537 Ignore invalid OpenMP nthreads values (537) (@yeganer)
527 Unit tests for untested methods of tardis/atomic.py (527) (@)
533 Remove rpacket.recently_crossed_boundary flag (533) (@wkerzendorf)
514 Performance (514) (@wkerzendorf)
531 Organize headers in C-Extension (531) (@wkerzendorf)
526 Docs: Include conda-requirements in installation.rst (526) (@ssim)