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Model¶
As shown previously, when Simulation.from_config() is called, a SimulationState object is created. This is done via the class method SimulationState.from_config(). This model object contains important information about the shell structure, density, abundance, radiative temperature, and dilution factor throughout the supernova.
Throughout this notebook, we show various configuration inputs into the TARDIS model and the resulting model. In interactive mode, these parameters can be varied to explore how the model changes. Editing configuration parameters in the notebook is explained here.
This notebook is based on the built-in TARDIS models, but these parameters can also be input via custom model configurations, the CSVY model or the custom abundance widget.
Shell Structure¶
TARDIS models supernovae as expanding homologously. This means that at the beginning of the explosion, the supernova starts at a single point and proceeds to expand radially outward such that the ratio of the velocity of the ejecta to the distance from the ejecta to the supernova’s center is uniform throughout the supernova. As an example, if the outer edge of the ejecta moves outward at some velocity \(v_\mathrm{boundary\_outer}\), the velocity of the ejecta half way between the outer edge and the center would be \(\frac{v_\mathrm{boundary\_outer}}{2}\). The animation below demonstrates this type of expansion.
TARDIS simulates radiative transfer between an inner boundary (the photosphere) and an outer boundary (the outer edge of the supernova ejecta). The velocity of the inner boundary \(v_\mathrm{boundary\_inner}\) and the velocity of the outer boundary \(v_\mathrm{boundary\_outer}\) are supplied in the configuration file, as well as the time after the explosion for which TARDIS is calculating the spectrum (\(t_\mathrm{explosion}\)). The radii of the inner and outer boundaries are therefore calculated by \(r_\mathrm{boundary\_inner}=v_\mathrm{boundary\_inner}*t_\mathrm{explosion}\) and \(r_\mathrm{boundary\_outer}=v_\mathrm{boundary\_outer}*t_\mathrm{explosion}\). Plasma at a distance \(r\) from the center of the supernova would then be traveling outward at a speed \(v=\frac{r}{r_\mathrm{boundary\_outer}}v_\mathrm{boundary\_outer} = \frac{r}{t_\mathrm{explosion}}\). This is also shown in the animation.
Additionally, TARDIS divides the space between the inner and outer computational boundaries into cells – radial shells for which the state/condition of the ejecta is (spatially) constant. In the animation, 6 cells are shown, being divided by the light blue lines. As TARDIS is a time-independent code which calculates the spectra at an instant in time, the radii of the boundaries (either of the computational domain or of the cells) do not change throughout the simulation.
We now demonstrate how the shell structure works using the TARDIS code.
[1]:
# We import the necessary packages
from tardis.io.configuration.config_reader import Configuration
from tardis.model import SimulationState
from tardis.io.atom_data import download_atom_data
from tardis.io.atom_data.base import AtomData
from astropy import units as u
import matplotlib.pyplot as plt
import copy
# We download the atomic data needed to run the simulation
download_atom_data('kurucz_cd23_chianti_H_He')
atom_data = AtomData.from_hdf('kurucz_cd23_chianti_H_He.h5')
Configuration File /home/runner/.astropy/config/tardis_internal_config.yml does not exist - creating new one from default
CRITICAL:root:
********************************************************************************
TARDIS will download different kinds of data (e.g. atomic) to its data directory /home/runner/Downloads/tardis-data
TARDIS DATA DIRECTORY not specified in /home/runner/.astropy/config/tardis_internal_config.yml:
ASSUMING DEFAULT DATA DIRECTORY /home/runner/Downloads/tardis-data
YOU CAN CHANGE THIS AT ANY TIME IN /home/runner/.astropy/config/tardis_internal_config.yml
********************************************************************************
WARNING:tardis.io.atom_data.atom_web_download:Atomic Data kurucz_cd23_chianti_H_He already exists in /home/runner/Downloads/tardis-data/kurucz_cd23_chianti_H_He.h5. Will not download - override with force_download=True.
[2]:
# Set up a base configuration to use throughout the notebook
base_config = Configuration.from_yaml("tardis_example.yml")
In the cell below, we set up a model. We use the specific structure where we supply \(t_\mathrm{explosion}\), the velocity of the inner and outer boundaries of the supernova (labeled start and stop), and the number of shells (labeled num). The shells are then evenly spaced between the inner and outer boundaries of the supernova. The time after the explosion, the inner and outer velocities, and the number
of shells can be varied to get different shell structures. The SimulationState object stores information about the model in the following attributes: velocity shows the velocity of the shell boundaries, v_inner shows the velocities of the inner boundaries of each shell, v_outer shows the velocity of the outer boundaries of each shell, and v_middle shows the velocity of the middle of each shell. Similarly, radius, r_inner, r_outer, and r_middle show the radii
of each shell boundary, the inner boundaries, the outer boundaries, and the middles of each shell, respectively. v_boundary_inner shows the velocity of the inner boundary of the computational domain, and v_boundary_outer shows the velocity of the outer boundary of the computational domain. Finally, volume shows the volume of each shell, calculated via the formula of the volume of a spherical shell: \(V=\frac{4}{3}\pi (r_\mathrm{outer}^3-r_\mathrm{inner}^3)\).
[3]:
shell_config = copy.deepcopy(base_config)
shell_config.supernova.time_explosion = 10 * u.day
# This line is necessary to indicate we are using a built-in shell structure.
# Do not change it.
shell_config.model.structure.type = 'specific'
shell_config.model.structure.velocity.start = 1000 * u.km/u.s
shell_config.model.structure.velocity.stop = 2000 * u.km/u.s
shell_config.model.structure.velocity.num = 20
shell_simulation_state = SimulationState.from_config(shell_config, atom_data=atom_data)
print('velocity:\n', shell_simulation_state.velocity)
print('v_inner:\n', shell_simulation_state.v_inner)
print('v_outer:\n', shell_simulation_state.v_outer)
print('v_middle:\n', shell_simulation_state.v_middle)
print('v_boundary_inner:\n', shell_simulation_state.v_boundary_inner)
print('v_boundary_outer:\n', shell_simulation_state.v_boundary_outer)
print('radius:\n', shell_simulation_state.radius)
print('r_inner:\n', shell_simulation_state.r_inner)
print('r_outer:\n', shell_simulation_state.r_outer)
print('r_middle:\n', shell_simulation_state.r_middle)
print('volume:\n', shell_simulation_state.volume)
WARNING:tardis.io.model.parse_density_configuration:Number of density points larger than number of shells. Assuming inner point irrelevant
velocity:
[1.00e+08 1.05e+08 1.10e+08 1.15e+08 1.20e+08 1.25e+08 1.30e+08 1.35e+08
1.40e+08 1.45e+08 1.50e+08 1.55e+08 1.60e+08 1.65e+08 1.70e+08 1.75e+08
1.80e+08 1.85e+08 1.90e+08 1.95e+08 2.00e+08] cm / s
v_inner:
[1.00e+08 1.05e+08 1.10e+08 1.15e+08 1.20e+08 1.25e+08 1.30e+08 1.35e+08
1.40e+08 1.45e+08 1.50e+08 1.55e+08 1.60e+08 1.65e+08 1.70e+08 1.75e+08
1.80e+08 1.85e+08 1.90e+08 1.95e+08] cm / s
v_outer:
[1.05e+08 1.10e+08 1.15e+08 1.20e+08 1.25e+08 1.30e+08 1.35e+08 1.40e+08
1.45e+08 1.50e+08 1.55e+08 1.60e+08 1.65e+08 1.70e+08 1.75e+08 1.80e+08
1.85e+08 1.90e+08 1.95e+08 2.00e+08] cm / s
v_middle:
[1.025e+08 1.075e+08 1.125e+08 1.175e+08 1.225e+08 1.275e+08 1.325e+08
1.375e+08 1.425e+08 1.475e+08 1.525e+08 1.575e+08 1.625e+08 1.675e+08
1.725e+08 1.775e+08 1.825e+08 1.875e+08 1.925e+08 1.975e+08] cm / s
v_boundary_inner:
100000000.0 cm / s
v_boundary_outer:
200000000.0 cm / s
radius:
[8.6400e+13 9.0720e+13 9.5040e+13 9.9360e+13 1.0368e+14 1.0800e+14
1.1232e+14 1.1664e+14 1.2096e+14 1.2528e+14 1.2960e+14 1.3392e+14
1.3824e+14 1.4256e+14 1.4688e+14 1.5120e+14 1.5552e+14 1.5984e+14
1.6416e+14 1.6848e+14 1.7280e+14] cm
r_inner:
[8.6400e+13 9.0720e+13 9.5040e+13 9.9360e+13 1.0368e+14 1.0800e+14
1.1232e+14 1.1664e+14 1.2096e+14 1.2528e+14 1.2960e+14 1.3392e+14
1.3824e+14 1.4256e+14 1.4688e+14 1.5120e+14 1.5552e+14 1.5984e+14
1.6416e+14 1.6848e+14] cm
r_outer:
[9.0720e+13 9.5040e+13 9.9360e+13 1.0368e+14 1.0800e+14 1.1232e+14
1.1664e+14 1.2096e+14 1.2528e+14 1.2960e+14 1.3392e+14 1.3824e+14
1.4256e+14 1.4688e+14 1.5120e+14 1.5552e+14 1.5984e+14 1.6416e+14
1.6848e+14 1.7280e+14] cm
r_middle:
[8.8560e+13 9.2880e+13 9.7200e+13 1.0152e+14 1.0584e+14 1.1016e+14
1.1448e+14 1.1880e+14 1.2312e+14 1.2744e+14 1.3176e+14 1.3608e+14
1.4040e+14 1.4472e+14 1.4904e+14 1.5336e+14 1.5768e+14 1.6200e+14
1.6632e+14 1.7064e+14] cm
volume:
[4.25848318e+41 4.68399379e+41 5.12976681e+41 5.59580224e+41
6.08210009e+41 6.58866034e+41 7.11548300e+41 7.66256807e+41
8.22991555e+41 8.81752544e+41 9.42539775e+41 1.00535325e+42
1.07019296e+42 1.13705891e+42 1.20595111e+42 1.27686954e+42
1.34981422e+42 1.42478513e+42 1.50178229e+42 1.58080569e+42] cm3
Notice that radius = velocity*time_explosion, and similarly for r_inner, r_outer, and r_middle. You can get the radius of the photosphere via v_boundary_inner*time_explosion and outer edge of the supernova via v_boundary_outer*time_explosion.
Note
Using the built-in shell structure, as shown here, the shells are all equally spaced. This is not necessarily the case if one uses the file structure, CSVY model, or custom abundance widget.
Density¶
We now look at how TARDIS models the density inside each shell. If you use the built-in densities, TARDIS allows you to choose between the four models discussed below. The file structure, CSVY model, and custom abundance widget options allow more freedom in assigning densities to each shell.
In general, the density in the supernova at a specific moment in time is a function of the radius or velocity of the ejecta (either can be used, since the radius and velocity are linearly related at any moment of time). Since the shell velocities do not change over time, it is more simple to write the densities as a function of ejecta velocity. If we do this, the time-dependence of the density is simple. We know the total mass of the ejecta is constant in each shell due to the nature of homologous expansion. The inner and outer radii of each shell increase linearly over time, meaning the volume increases as time cubed. Since density is mass divided by volume, the density is inverse-cubic in time. Mathematically, if \(\rho(v,t_\mathrm{explosion})\) is the density at a velocity \(v\) after a time \(t_\mathrm{explosion}\), given some characteristic time \(t_0\), we have
where \(\rho(v,t_0)\) is the density at \(t_\mathrm{explosion}=t_0\). Notice that this gives the desired time dependence – for example, at \(t_\mathrm{explosion}=2t_0\), \(\rho(v,t_\mathrm{explosion})=\rho(v,t_0)/8\), exactly an inverse-cube relationship.
Since the state of the ejecta, including the density, is the same throughout the shell, we determine the shell’s density by plugging the velocity/radius at the center of the shell into the density function. We now explore the various built-in density profiles. For each profile, we build an example model using the density profile and example parameters (which can be varied in interactive mode), print the densities in each shell, and show a graph of density versus radius (specifically the radius at the center of each shell).
Note that the density in each shell is stored in the density attribute of the SimulationState object.
Branch85 W7 Density¶
The first built-in density profile is the well-known W7 density model. There are no density-specific parameters that should be edited (see here for the default values) as this is a well-established model. The shell structure can be varied as usual to see the effects of the shell structure on the W7 density.
[4]:
w7_density_config = copy.deepcopy(base_config)
w7_density_config.supernova.time_explosion = 10 * u.day
# This line is necessary to indicate we are using a built-in shell structure
# and density. Do not change it.
w7_density_config.model.structure.type = 'specific'
w7_density_config.model.structure.velocity.start = 1000 * u.km/u.s
w7_density_config.model.structure.velocity.stop = 2000 * u.km/u.s
w7_density_config.model.structure.velocity.num = 20
w7_density_config.model.structure.density.type = 'branch85_w7'
w7_density_model = SimulationState.from_config(w7_density_config, atom_data=atom_data)
print('density:\n', w7_density_model.density)
plt.plot(w7_density_model.r_middle, w7_density_model.density)
plt.xlabel(f'Radius ({w7_density_model.r_middle.unit})')
plt.ylabel(f'Density ({w7_density_model.density.unit})');
WARNING:tardis.io.model.parse_density_configuration:Number of density points larger than number of shells. Assuming inner point irrelevant
density:
[3.13040297e-06 2.24289041e-06 1.63154722e-06 1.20337847e-06
8.98906836e-07 6.79353803e-07 5.18986614e-07 4.00450110e-07
3.11862570e-07 2.44975787e-07 1.93989578e-07 1.54775921e-07
1.24363732e-07 1.00592042e-07 8.18735475e-08 6.70314791e-08
5.51857848e-08 4.56728802e-08 3.79885019e-08 3.17466281e-08] g / cm3
In the cell below, we show the time dependence of the W7 density profile by comparing the density plots for models at two different times.
[5]:
w7_modified_config = copy.deepcopy(w7_density_config)
w7_modified_config.supernova.time_explosion = 12 * u.day
w7_modified_model = SimulationState.from_config(w7_modified_config, atom_data=atom_data)
print('density:\n', w7_modified_model.density)
plt.plot(w7_density_model.r_middle,
w7_density_model.density,
label=f't_explosion = {w7_density_config.supernova.time_explosion}')
plt.plot(w7_modified_model.r_middle,
w7_modified_model.density,
label=f't_explosion = {w7_modified_config.supernova.time_explosion}')
plt.xlabel(f'Radius ({w7_density_model.r_middle.unit})')
plt.ylabel(f'Density ({w7_density_model.density.unit})')
plt.legend();
WARNING:tardis.io.model.parse_density_configuration:Number of density points larger than number of shells. Assuming inner point irrelevant
density:
[1.81157579e-06 1.29796899e-06 9.44182418e-07 6.96399579e-07
5.20200716e-07 3.93144562e-07 3.00339476e-07 2.31741962e-07
1.80476024e-07 1.41768395e-07 1.12262487e-07 8.95693988e-08
7.19697525e-08 5.82129873e-08 4.73805252e-08 3.87913652e-08
3.19362180e-08 2.64310649e-08 2.19840868e-08 1.83718913e-08] g / cm3
For the other density models described below, time dependence works similarly, and readers are encouraged to test out how they change over time. However, for brevity, we omit more explicit examples in this notebook.
Uniform Density¶
The uniform density profile sets the density in each shell to a constant value (with respect to velocity/radius). That is,
and thus
The parameters that can be varied, besides the shell structure, are thus the characteristic time \(t_0\), and the value of the density at time \(t_0\). The schema can be found here.
[6]:
uni_density_config = copy.deepcopy(base_config)
uni_density_config.supernova.time_explosion = 10 * u.day
# This line is necessary to indicate we are using a built-in shell structure
# and density. Do not change it.
uni_density_config.model.structure.type = 'specific'
uni_density_config.model.structure.velocity.start = 1000 * u.km/u.s
uni_density_config.model.structure.velocity.stop = 2000 * u.km/u.s
uni_density_config.model.structure.velocity.num = 20
uni_density_config.model.structure.density.type = 'uniform'
uni_density_config.model.structure.density.time_0 = 1 * u.day
uni_density_config.model.structure.density.value = 5e-10 * u.kg/u.cm**3
uni_density_model = SimulationState.from_config(uni_density_config, atom_data=atom_data)
print('density:\n', uni_density_model.density)
plt.plot(uni_density_model.r_middle, uni_density_model.density)
plt.xlabel(f'Radius ({uni_density_model.r_middle.unit})')
plt.ylabel(f'Density ({uni_density_model.density.unit})');
WARNING:tardis.io.model.parse_density_configuration:Number of density points larger than number of shells. Assuming inner point irrelevant
density:
[5.e-10 5.e-10 5.e-10 5.e-10 5.e-10 5.e-10 5.e-10 5.e-10 5.e-10 5.e-10
5.e-10 5.e-10 5.e-10 5.e-10 5.e-10 5.e-10 5.e-10 5.e-10 5.e-10 5.e-10] g / cm3
Power Law Density¶
The power law density profile uses the following equation:
and thus
Thus, the relevant parameters are \(t_0\), \(\rho_0\), \(v_0\), and the exponent. We recommend that the exponent be negative for a sensible density profile. The schema can be found here.
Note here that \(\rho_0\) is the density at time \(t_0\) and velocity \(v_0\).
[7]:
pow_density_config = copy.deepcopy(base_config)
pow_density_config.supernova.time_explosion = 10 * u.day
# This line is necessary to indicate we are using a built-in shell structure
# and density.
pow_density_config.model.structure.type = 'specific'
pow_density_config.model.structure.velocity.start = 1000 * u.km/u.s
pow_density_config.model.structure.velocity.stop = 2000 * u.km/u.s
pow_density_config.model.structure.velocity.num = 20
pow_density_config.model.structure.density.type = 'power_law'
pow_density_config.model.structure.density.time_0 = 1 * u.day
pow_density_config.model.structure.density.rho_0 = 5e-10 * u.kg/u.cm**3
pow_density_config.model.structure.density.v_0 = 500 * u.km/u.s
pow_density_config.model.structure.density.exponent = -2
pow_density_model = SimulationState.from_config(pow_density_config, atom_data=atom_data)
print('density:\n', pow_density_model.density)
plt.plot(pow_density_model.r_middle, pow_density_model.density)
plt.xlabel(f'Radius ({pow_density_model.r_middle.unit})')
plt.ylabel(f'Density ({pow_density_model.density.unit})');
WARNING:tardis.io.model.parse_density_configuration:Number of density points larger than number of shells. Assuming inner point irrelevant
density:
[1.18976800e-10 1.08166577e-10 9.87654321e-11 9.05387053e-11
8.32986256e-11 7.68935025e-11 7.11997152e-11 6.61157025e-11
6.15574023e-11 5.74547544e-11 5.37489922e-11 5.03905266e-11
4.73372781e-11 4.45533526e-11 4.20079815e-11 3.96746677e-11
3.75304935e-11 3.55555556e-11 3.37325013e-11 3.20461465e-11] g / cm3
Exponential Density¶
The exponential density profile uses the following equation:
and thus
Thus, the relevant parameters are \(t_0\), \(\rho_0\), and \(v_0\). The schema can be found here.
Note here again that \(\rho_0\) is the density at time \(t_0\) and velocity \(v_0\).
[8]:
exp_density_config = copy.deepcopy(base_config)
exp_density_config.supernova.time_explosion = 10 * u.day
# This line is necessary to indicate we are using a built-in shell structure
# and density.
exp_density_config.model.structure.type = 'specific'
exp_density_config.model.structure.velocity.start = 1000 * u.km/u.s
exp_density_config.model.structure.velocity.stop = 2000 * u.km/u.s
exp_density_config.model.structure.velocity.num = 20
exp_density_config.model.structure.density.type = 'exponential'
exp_density_config.model.structure.density.time_0 = 1 * u.day
exp_density_config.model.structure.density.rho_0 = 5e-10 * u.kg/u.cm**3
exp_density_config.model.structure.density.v_0 = 500 * u.km/u.s
exp_density_model = SimulationState.from_config(exp_density_config, atom_data=atom_data)
print('density:\n', exp_density_model.density)
plt.plot(exp_density_model.r_middle, exp_density_model.density)
plt.xlabel(f'Radius ({exp_density_model.r_middle.unit})')
plt.ylabel(f'Density ({exp_density_model.density.unit})');
WARNING:tardis.io.model.parse_density_configuration:Number of density points larger than number of shells. Assuming inner point irrelevant
density:
[6.43674518e-11 5.82420789e-11 5.26996123e-11 4.76845811e-11
4.31467932e-11 3.90408330e-11 3.53256065e-11 3.19639306e-11
2.89221604e-11 2.61698530e-11 2.36794622e-11 2.14260634e-11
1.93871039e-11 1.75421771e-11 1.58728182e-11 1.43623198e-11
1.29955644e-11 1.17588729e-11 1.06398682e-11 9.62735089e-12] g / cm3
Abundance¶
The SimulationState also carries important information about elemental abundances in each shell. These are mass abundances – that is, the abundance of oxygen is the fraction of the shell’s mass that is made up of oxygen.
The only built-in abundance model that TARDIS offers is a uniform abundance, meaning each shell has identical abundances. Like density, however, the file abundance, CSVY model, and custom abundance widget methods allow users more freedom with assigning different abundances in each shell.
A table of abundances in each shell is stored in the abundance attribute of the SimulationState object.
In this first example, the abundances in each shell do not depend on the time after the explosion and are identical to those provided in the configuration.
[9]:
abund_config = copy.deepcopy(base_config)
abund_config.supernova.time_explosion = 10 * u.day
# We add the abundances in this form to overwrite the elements in the
# base configuration.
abund_config.model.abundances = {'type':'uniform',
'O':.2,
'Ca':.25,
'Mg':.15,
'Si':.3,
'He': .1}
abund_model = SimulationState.from_config(abund_config, atom_data=atom_data)
abund_model.abundance
WARNING:tardis.io.model.parse_density_configuration:Number of density points larger than number of shells. Assuming inner point irrelevant
[9]:
| 0 | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| atomic_number | ||||||||||||||||||||
| 2 | 0.10 | 0.10 | 0.10 | 0.10 | 0.10 | 0.10 | 0.10 | 0.10 | 0.10 | 0.10 | 0.10 | 0.10 | 0.10 | 0.10 | 0.10 | 0.10 | 0.10 | 0.10 | 0.10 | 0.10 |
| 8 | 0.20 | 0.20 | 0.20 | 0.20 | 0.20 | 0.20 | 0.20 | 0.20 | 0.20 | 0.20 | 0.20 | 0.20 | 0.20 | 0.20 | 0.20 | 0.20 | 0.20 | 0.20 | 0.20 | 0.20 |
| 12 | 0.15 | 0.15 | 0.15 | 0.15 | 0.15 | 0.15 | 0.15 | 0.15 | 0.15 | 0.15 | 0.15 | 0.15 | 0.15 | 0.15 | 0.15 | 0.15 | 0.15 | 0.15 | 0.15 | 0.15 |
| 14 | 0.30 | 0.30 | 0.30 | 0.30 | 0.30 | 0.30 | 0.30 | 0.30 | 0.30 | 0.30 | 0.30 | 0.30 | 0.30 | 0.30 | 0.30 | 0.30 | 0.30 | 0.30 | 0.30 | 0.30 |
| 20 | 0.25 | 0.25 | 0.25 | 0.25 | 0.25 | 0.25 | 0.25 | 0.25 | 0.25 | 0.25 | 0.25 | 0.25 | 0.25 | 0.25 | 0.25 | 0.25 | 0.25 | 0.25 | 0.25 | 0.25 |
In the next example, we show how TARDIS handles radioactive isotopes which are often present in supernovae. Specific isotopes such as Ni56 (nickel-56 with 28 protons and 28 neutrons) or Cr51 (chromium-51 with 24 protons and 27 neutrons) can be provided in the configuration.
If any radioactive isotope is provided, the abundances provided are assumed to be the abundances at the time of the explosion. TARDIS then uses pyne to calculate the decay products of these isotopes after a time \(t_\mathrm{explosion}\). This is demonstrated in the example below.
If an isotope mass number is not supplied, TARDIS uses the most stable form of the atom (for example, Ni refers to the stable nickel-58).
[10]:
abund_isotopes_config = copy.deepcopy(base_config)
abund_isotopes_config.supernova.time_explosion = 10 * u.day
abund_isotopes_config.model.structure.velocity.num = 20
abund_isotopes_config.model.abundances = {'type':'uniform',
'O':.3,
'Ni56':.2,
'Ni57':.1,
'Cr51':.4}
abund_isotopes_simulation_state = SimulationState.from_config(abund_isotopes_config, atom_data=atom_data)
abund_isotopes_simulation_state.abundance
WARNING:tardis.io.model.parse_density_configuration:Number of density points larger than number of shells. Assuming inner point irrelevant
[10]:
| 0 | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| atomic_number | ||||||||||||||||||||
| 8 | 0.300000 | 0.300000 | 0.300000 | 0.300000 | 0.300000 | 0.300000 | 0.300000 | 0.300000 | 0.300000 | 0.300000 | 0.300000 | 0.300000 | 0.300000 | 0.300000 | 0.300000 | 0.300000 | 0.300000 | 0.300000 | 0.300000 | 0.300000 |
| 23 | 0.088544 | 0.088544 | 0.088544 | 0.088544 | 0.088544 | 0.088544 | 0.088544 | 0.088544 | 0.088544 | 0.088544 | 0.088544 | 0.088544 | 0.088544 | 0.088544 | 0.088544 | 0.088544 | 0.088544 | 0.088544 | 0.088544 | 0.088544 |
| 24 | 0.311455 | 0.311455 | 0.311455 | 0.311455 | 0.311455 | 0.311455 | 0.311455 | 0.311455 | 0.311455 | 0.311455 | 0.311455 | 0.311455 | 0.311455 | 0.311455 | 0.311455 | 0.311455 | 0.311455 | 0.311455 | 0.311455 | 0.311455 |
| 26 | 0.009002 | 0.009002 | 0.009002 | 0.009002 | 0.009002 | 0.009002 | 0.009002 | 0.009002 | 0.009002 | 0.009002 | 0.009002 | 0.009002 | 0.009002 | 0.009002 | 0.009002 | 0.009002 | 0.009002 | 0.009002 | 0.009002 | 0.009002 |
| 27 | 0.226150 | 0.226150 | 0.226150 | 0.226150 | 0.226150 | 0.226150 | 0.226150 | 0.226150 | 0.226150 | 0.226150 | 0.226150 | 0.226150 | 0.226150 | 0.226150 | 0.226150 | 0.226150 | 0.226150 | 0.226150 | 0.226150 | 0.226150 |
| 28 | 0.064835 | 0.064835 | 0.064835 | 0.064835 | 0.064835 | 0.064835 | 0.064835 | 0.064835 | 0.064835 | 0.064835 | 0.064835 | 0.064835 | 0.064835 | 0.064835 | 0.064835 | 0.064835 | 0.064835 | 0.064835 | 0.064835 | 0.064835 |
Temperatures¶
The model also includes information about the temperature of the photosphere/inner boundary, labeled as \(T_\mathrm{inner}\), and the temperature of the plasma in each cell, called the radiative temperature and labeled as \(T_\mathrm{rad}\). As will be explained, both of these quantities are be updated throughout the simulation, so the calculations in this section are the initial guesses.
TARDIS initially calculates \(T_\mathrm{inner}\) as the temperature of a blackbody such that the luminosity of the photosphere (see initialization) matches the requested output luminosity of the entire supernova \(L_\mathrm{requested}\), which is specified in the spectrum configuration:
where \(\sigma_{\mathrm{R}}\) is the Stefan-Boltzmann constant and \(r_{\mathrm{boundary\_inner}}\) is once again the radius of the photosphere, calculated as part of the shell structure. Because of light-matter interactions, the output luminosity of the supernova will not be the same as the luminosity of the photosphere, so the photospheric temperature is updated throughout the simulation as part of the convergence process in order to match the output luminosity to the requested luminosity (see Updating Plasma and Convergence).
Next, TARDIS calculates the initial guess for the radiative temperature in each shell. This temperature is also updated throughout the simulation based on light-matter interactions (see once again Updating Plasma and Convergence). The initial guess for \(T_\mathrm{rad}\) is calculated using Wien’s Law. Wien’s Law states that the temperature of a blackbody is inversely proportional to the blackbody’s peak wavelength. The proportionality constant, labeled \(b\), is approximately \(2.898*10^{-3} m*K\). In equation form,
Since we know \(T_\mathrm{inner}\) (from the previous calculation), at the photosphere, we have \(\lambda_\mathrm{peak,inner}=\frac{b}{T_\mathrm{inner}}\). Now, when the ejecta is moving at a velocity \(v\), \(\lambda_\mathrm{peak}\) is doppler shifted (in more technical language, we find the peak wavelength in the co-moving frame, see reference frames). The doppler factor is (approximately) \(1+\frac{\Delta v}{c}\) where \(\Delta v\) is the difference between \(v\) and the velocity at the photosphere (i.e. \(\Delta v = v-v_\mathrm{boundary\_inner}\)). So,
Thus, the temperature at a velocity \(v\) is
As with density, the radiative temperature is modeled as constant throughout the shell, so we determine the temperature of the shell based on the ejecta’s velocity at the center of the shell.
Note
Specific initial guesses for the photospheric and radiative temperatures not based on the above calculations can also be input in the plasma configuration (for both) or in the CSVY model (radiative temperature only).
Using the parameters below, we print off the initial photospheric temperature and radiative temperature in each shell, and plot temperature versus radius, including a point for the temperature of the photosphere.
[11]:
t_rad_config = copy.deepcopy(base_config)
t_rad_config.supernova.time_explosion = 10 * u.day
# In the configuration file, but not here, the luminosity requested can be
# given on a logarithmic scale based on the luminosity of the sun.
t_rad_config.supernova.luminosity_requested = 4e44 * u.erg/u.s
# This line is necessary to indicate we are using a built-in shell structure
# and density. Do not change it.
t_rad_config.model.structure.type = 'specific'
t_rad_config.model.structure.velocity.start = 1000 * u.km/u.s
t_rad_config.model.structure.velocity.stop = 2000 * u.km/u.s
t_rad_config.model.structure.velocity.num = 20
t_radiative_simulation_state = SimulationState.from_config(t_rad_config, atom_data=atom_data)
print('t_inner:\n', t_radiative_simulation_state.t_inner)
print('t_rad:\n', t_radiative_simulation_state.t_radiative)
plt.plot(t_radiative_simulation_state.r_middle, t_radiative_simulation_state.t_radiative)
plt.scatter(t_radiative_simulation_state.radius[0], t_radiative_simulation_state.t_inner)
plt.xlabel(f'Radius ({t_radiative_simulation_state.r_middle.unit})')
plt.ylabel(f'Radiative Temperature ({t_radiative_simulation_state.t_radiative.unit})');
WARNING:tardis.io.model.parse_density_configuration:Number of density points larger than number of shells. Assuming inner point irrelevant
t_inner:
93122.09836905584 K
t_rad:
[93114.33346946 93098.80755443 93083.28681612 93067.77125196
93052.26085936 93036.75563572 93021.25557846 93005.76068501
92990.27095279 92974.78637921 92959.30696169 92943.83269767
92928.36358457 92912.89961982 92897.44080085 92881.98712509
92866.53858997 92851.09519294 92835.65693142 92820.22380286] K
Dilution Factor¶
The dilution factor \(W\) describes the fraction of the energy from a blackbody that “reaches” the observer. That is, it is the ratio of the energy density at the observer to the energy density of the blackbody. This heavily depends on light-matter interactions, as matter can shield or amplify the energy coming from the blackbody, in this case the photosphere. However, in the absence of other material, the dilution factor is purely geometric, called the geometric dilution factor. The geometric dilution factor at a point is the fraction of the point’s “field of view” that the blackbody takes up, as shown in the figure below.
Using geometry (in 3D, where the photosphere in the figure is a sphere, not a circle), the fraction of the point’s “field of view” taken up by the sphere is
where \(r_\mathrm{boundary\_inner}\) is the radius of the circle in the picture (the photosphere in terms of TARDIS). This is the geometric dilution factor.
Like the radiative temperature, the dilution factor in each cell changes throughout the simulation based on the light-matter interactions (see Updating Plasma and Convergence). TARDIS uses the geometric dilution factor as the initial guess for the dilution factor in each cell, plugging in the radius at the center of the cell to determine the initial dilution factor in the cell.
Note
An initial guess for the dilution factor in each cell not based on the geometric dilution factor can be input via the CSVY model.
We print off the dilution factor in each cell and plot the dilution factor versus radius for a certain shell structure:
[12]:
dilution_factor_config = copy.deepcopy(base_config)
dilution_factor_config.supernova.time_explosion = 10 * u.day
# This line is necessary to indicate we are using a built-in shell structure
# and density. Do not change it.
dilution_factor_config.model.structure.type = 'specific'
dilution_factor_config.model.structure.velocity.start = 1000 * u.km/u.s
dilution_factor_config.model.structure.velocity.stop = 2000 * u.km/u.s
dilution_factor_config.model.structure.velocity.num = 20
dilution_factor_simulation_state = SimulationState.from_config(dilution_factor_config, atom_data=atom_data)
print(f'dilution_factor: {dilution_factor_simulation_state.dilution_factor}')
plt.plot(dilution_factor_simulation_state.r_middle, dilution_factor_simulation_state.dilution_factor)
plt.xlabel(f'Radius ({dilution_factor_simulation_state.r_middle.unit})')
plt.ylabel(f'Dilution Factor');
WARNING:tardis.io.model.parse_density_configuration:Number of density points larger than number of shells. Assuming inner point irrelevant
dilution_factor: [0.3902439 0.31651472 0.27093858 0.23746888 0.21120466 0.1898178
0.17197474 0.15682571 0.14379052 0.13245342 0.12250561 0.11371132
0.10588651 0.09888494 0.09258861 0.08690114 0.08174289 0.07704742
0.07275885 0.06882984]
